HEADER DNA 23-APR-91 1D36 TITLE FACILE FORMATION OF A CROSSLINKED ADDUCT BETWEEN DNA AND THE TITLE 2 DAUNORUBICIN DERIVATIVE MAR70 MEDIATED BY FORMALDEHYDE: MOLECULAR TITLE 3 STRUCTURE OF THE MAR70-D(CGTNACG) COVALENT ADDUC COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*GP*TP*AP*CP*G)-3'); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA EXPDTA X-RAY DIFFRACTION AUTHOR Y.-G.GAO,Y.-C.LIAW,Y.-K.LI,G.A.VAN DER MAREL,J.H.VAN BOOM,A.H.-J.WANG REVDAT 4 07-FEB-24 1D36 1 REMARK HETSYN LINK REVDAT 3 24-FEB-09 1D36 1 VERSN REVDAT 2 01-APR-03 1D36 1 JRNL REVDAT 1 15-APR-92 1D36 0 JRNL AUTH Y.G.GAO,Y.C.LIAW,Y.K.LI,G.A.VAN DER MAREL,J.H.VAN BOOM, JRNL AUTH 2 A.H.WANG JRNL TITL FACILE FORMATION OF A CROSSLINKED ADDUCT BETWEEN DNA AND THE JRNL TITL 2 DAUNORUBICIN DERIVATIVE MAR70 MEDIATED BY FORMALDEHYDE: JRNL TITL 3 MOLECULAR STRUCTURE OF THE MAR70-D(CGTNACG) COVALENT ADDUCT. JRNL REF PROC.NATL.ACAD.SCI.USA V. 88 4845 1991 JRNL REFN ISSN 0027-8424 JRNL PMID 2052564 JRNL DOI 10.1073/PNAS.88.11.4845 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.-G.GAO,A.H.-J.WANG REMARK 1 TITL INFLUENCE OF AGLYCONE MODIFICATIONS ON THE BINDING OF REMARK 1 TITL 2 ANTHRACYCLINE DRUGS TO DNA: THE MOLECULAR STRUCTURE OF REMARK 1 TITL 3 IDARUBICIN AND 4-O-DEMETHYL-11- DEOXYDOXORUBICIN COMPLEXED REMARK 1 TITL 4 TO D(CGATCG) REMARK 1 REF ANTI-CANCER DRUG DES. V. 6 137 1991 REMARK 1 REFN ISSN 0266-9536 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NUCLSQ REMARK 3 AUTHORS : WESTHOF,DUMAS,MORAS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 2168 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 120 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 68 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 SUGAR-BASE BOND DISTANCE (A) : NULL ; NULL REMARK 3 SUGAR-BASE BOND ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 PHOSPHATE BONDS DISTANCE (A) : NULL ; NULL REMARK 3 PHOSPHATE BOND ANGLE, H-BOND (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION CONTACT (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION CONTACT (A) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 SUGAR-BASE BONDS (A**2) : NULL ; NULL REMARK 3 SUGAR-BASE ANGLES (A**2) : NULL ; NULL REMARK 3 PHOSPHATE BONDS (A**2) : NULL ; NULL REMARK 3 PHOSPHATE BOND ANGLE, H-BOND (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1D36 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB. REMARK 100 THE DEPOSITION ID IS D_1000172640. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.00 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : DIFFRACTOMETER REMARK 200 DETECTOR MANUFACTURER : RIGAKU AFC-5R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 2168 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.00, VAPOR DIFFUSION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.55500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 14.00500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 14.00500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 13.27750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 14.00500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 14.00500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.83250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 14.00500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 14.00500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 13.27750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 14.00500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 14.00500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.83250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 26.55500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 28.01000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 28.01000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 26.55500 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP2 DC A 5 O HOH A 38 1.91 REMARK 500 O HOH A 15 O HOH A 38 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG A 2 P DG A 2 O5' 0.108 REMARK 500 DG A 2 C6 DG A 2 N1 -0.042 REMARK 500 DT A 3 O4' DT A 3 C4' -0.061 REMARK 500 DA A 4 C3' DA A 4 C2' -0.053 REMARK 500 DA A 4 O4' DA A 4 C4' -0.068 REMARK 500 DA A 4 C2 DA A 4 N3 0.058 REMARK 500 DA A 4 N7 DA A 4 C8 -0.055 REMARK 500 DC A 5 P DC A 5 O5' 0.077 REMARK 500 DG A 6 P DG A 6 O5' 0.097 REMARK 500 DG A 6 O4' DG A 6 C1' 0.074 REMARK 500 DG A 6 C6 DG A 6 N1 -0.058 REMARK 500 DG A 6 C8 DG A 6 N9 -0.056 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC A 1 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DC A 1 C6 - N1 - C2 ANGL. DEV. = -2.9 DEGREES REMARK 500 DC A 1 N3 - C4 - C5 ANGL. DEV. = -4.7 DEGREES REMARK 500 DC A 1 N3 - C4 - N4 ANGL. DEV. = 4.8 DEGREES REMARK 500 DC A 1 C3' - O3' - P ANGL. DEV. = 19.7 DEGREES REMARK 500 DG A 2 O3' - P - O5' ANGL. DEV. = -13.0 DEGREES REMARK 500 DG A 2 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 DG A 2 O4' - C1' - N9 ANGL. DEV. = 10.2 DEGREES REMARK 500 DG A 2 C3' - O3' - P ANGL. DEV. = 7.4 DEGREES REMARK 500 DT A 3 N1 - C2 - N3 ANGL. DEV. = 5.5 DEGREES REMARK 500 DT A 3 C2 - N3 - C4 ANGL. DEV. = -6.5 DEGREES REMARK 500 DT A 3 N3 - C4 - C5 ANGL. DEV. = 4.3 DEGREES REMARK 500 DT A 3 N1 - C2 - O2 ANGL. DEV. = -5.2 DEGREES REMARK 500 DT A 3 N3 - C4 - O4 ANGL. DEV. = -6.3 DEGREES REMARK 500 DA A 4 OP1 - P - OP2 ANGL. DEV. = 29.2 DEGREES REMARK 500 DA A 4 O5' - P - OP2 ANGL. DEV. = -10.6 DEGREES REMARK 500 DA A 4 C5' - C4' - O4' ANGL. DEV. = 7.8 DEGREES REMARK 500 DA A 4 C6 - N1 - C2 ANGL. DEV. = 5.4 DEGREES REMARK 500 DA A 4 C5 - C6 - N1 ANGL. DEV. = -3.7 DEGREES REMARK 500 DA A 4 C3' - O3' - P ANGL. DEV. = 9.9 DEGREES REMARK 500 DC A 5 O4' - C1' - N1 ANGL. DEV. = 8.2 DEGREES REMARK 500 DG A 6 O3' - P - OP2 ANGL. DEV. = -14.2 DEGREES REMARK 500 DG A 6 O3' - P - OP1 ANGL. DEV. = 9.1 DEGREES REMARK 500 DG A 6 O4' - C1' - N9 ANGL. DEV. = -6.1 DEGREES REMARK 500 DG A 6 C5 - C6 - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 DG A 6 C5 - C6 - O6 ANGL. DEV. = -6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 8 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 6 N7 REMARK 620 2 MAR A 7 O6 74.0 REMARK 620 3 MAR A 7 O4 123.2 50.5 REMARK 620 4 HOH A 9 O 95.1 95.6 81.0 REMARK 620 5 HOH A 10 O 100.6 109.8 107.8 152.9 REMARK 620 6 HOH A 11 O 125.8 155.0 105.9 69.7 83.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAR A 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 8 DBREF 1D36 A 1 6 PDB 1D36 1D36 1 6 SEQRES 1 A 6 DC DG DT DA DC DG HET MAR A 7 47 HET MG A 8 1 HETNAM MAR 4'-EPI-4'-(2-DEOXYFUCOSE)DAUNOMYCIN HETNAM MG MAGNESIUM ION HETSYN MAR MAR70; DAUNOMYCIN DERIVATIVE FORMUL 2 MAR C33 H39 N O13 FORMUL 3 MG MG 2+ FORMUL 4 HOH *68(H2 O) LINK N7 DG A 6 MG MG A 8 1555 1555 2.76 LINK O6 MAR A 7 MG MG A 8 1555 1555 3.09 LINK O4 MAR A 7 MG MG A 8 1555 1555 2.98 LINK MG MG A 8 O HOH A 9 1555 1555 3.07 LINK MG MG A 8 O HOH A 10 1555 1555 2.96 LINK MG MG A 8 O HOH A 11 1555 1555 2.85 SITE 1 AC1 12 DC A 1 DG A 2 DT A 3 DA A 4 SITE 2 AC1 12 DC A 5 DG A 6 MG A 8 HOH A 17 SITE 3 AC1 12 HOH A 30 HOH A 41 HOH A 62 HOH A 71 SITE 1 AC2 5 DG A 6 MAR A 7 HOH A 9 HOH A 10 SITE 2 AC2 5 HOH A 11 CRYST1 28.010 28.010 53.110 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.035702 0.000000 0.000000 0.00000 SCALE2 0.000000 0.035702 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018829 0.00000 ATOM 1 O5' DC A 1 9.252 19.943 22.938 1.00 16.50 O ATOM 2 C5' DC A 1 9.532 21.022 23.846 1.00 15.05 C ATOM 3 C4' DC A 1 11.011 20.982 24.181 1.00 14.66 C ATOM 4 O4' DC A 1 11.142 19.800 24.967 1.00 14.64 O ATOM 5 C3' DC A 1 11.983 20.870 23.023 1.00 14.89 C ATOM 6 O3' DC A 1 13.168 21.663 23.145 1.00 15.47 O ATOM 7 C2' DC A 1 12.369 19.361 23.055 1.00 13.90 C ATOM 8 C1' DC A 1 12.246 19.002 24.574 1.00 12.78 C ATOM 9 N1 DC A 1 11.943 17.587 24.696 1.00 11.38 N ATOM 10 C2 DC A 1 12.904 16.630 24.855 1.00 10.67 C ATOM 11 O2 DC A 1 14.106 16.977 24.861 1.00 11.67 O ATOM 12 N3 DC A 1 12.579 15.307 24.840 1.00 10.32 N ATOM 13 C4 DC A 1 11.316 14.887 24.850 1.00 9.84 C ATOM 14 N4 DC A 1 10.994 13.635 24.861 1.00 10.31 N ATOM 15 C5 DC A 1 10.277 15.898 24.733 1.00 10.15 C ATOM 16 C6 DC A 1 10.621 17.165 24.664 1.00 10.33 C ATOM 17 P DG A 2 13.851 22.907 22.460 1.00 21.83 P ATOM 18 OP1 DG A 2 14.820 23.514 23.278 1.00 20.85 O ATOM 19 OP2 DG A 2 12.742 23.568 21.775 1.00 22.26 O ATOM 20 O5' DG A 2 14.616 21.898 21.324 1.00 16.55 O ATOM 21 C5' DG A 2 15.854 21.307 21.552 1.00 15.43 C ATOM 22 C4' DG A 2 16.285 20.543 20.331 1.00 15.41 C ATOM 23 O4' DG A 2 15.506 19.380 20.208 1.00 14.70 O ATOM 24 C3' DG A 2 16.075 21.262 18.992 1.00 15.55 C ATOM 25 O3' DG A 2 17.232 20.960 18.158 1.00 17.83 O ATOM 26 C2' DG A 2 14.767 20.725 18.472 1.00 15.12 C ATOM 27 C1' DG A 2 14.969 19.260 18.897 1.00 13.25 C ATOM 28 N9 DG A 2 13.759 18.489 18.716 1.00 12.15 N ATOM 29 C8 DG A 2 12.456 18.859 18.668 1.00 11.66 C ATOM 30 N7 DG A 2 11.635 17.834 18.541 1.00 11.95 N ATOM 31 C5 DG A 2 12.470 16.736 18.392 1.00 10.92 C ATOM 32 C6 DG A 2 12.215 15.341 18.217 1.00 10.20 C ATOM 33 O6 DG A 2 11.092 14.831 18.126 1.00 11.19 O ATOM 34 N1 DG A 2 13.324 14.574 18.190 1.00 9.69 N ATOM 35 C2 DG A 2 14.579 15.050 18.318 1.00 8.30 C ATOM 36 N2 DG A 2 15.585 14.201 18.286 1.00 8.96 N ATOM 37 N3 DG A 2 14.873 16.333 18.450 1.00 9.90 N ATOM 38 C4 DG A 2 13.784 17.109 18.482 1.00 10.78 C ATOM 39 P DT A 3 17.924 21.918 17.091 1.00 24.60 P ATOM 40 OP1 DT A 3 18.652 22.991 17.776 1.00 23.74 O ATOM 41 OP2 DT A 3 16.770 22.094 16.145 1.00 25.98 O ATOM 42 O5' DT A 3 19.069 20.907 16.538 1.00 17.46 O ATOM 43 C5' DT A 3 19.839 20.106 17.362 1.00 16.16 C ATOM 44 C4' DT A 3 19.870 18.733 16.804 1.00 15.32 C ATOM 45 O4' DT A 3 18.691 18.027 16.974 1.00 14.90 O ATOM 46 C3' DT A 3 20.212 18.618 15.274 1.00 15.09 C ATOM 47 O3' DT A 3 21.562 18.243 15.259 1.00 16.03 O ATOM 48 C2' DT A 3 19.290 17.537 14.770 1.00 15.11 C ATOM 49 C1' DT A 3 18.484 17.066 15.928 1.00 13.86 C ATOM 50 N1 DT A 3 17.038 17.041 15.577 1.00 12.72 N ATOM 51 C2 DT A 3 16.520 15.767 15.402 1.00 11.62 C ATOM 52 O2 DT A 3 17.271 14.826 15.535 1.00 12.70 O ATOM 53 N3 DT A 3 15.209 15.599 15.168 1.00 11.07 N ATOM 54 C4 DT A 3 14.364 16.694 15.057 1.00 10.70 C ATOM 55 O4 DT A 3 13.187 16.391 14.860 1.00 11.36 O ATOM 56 C5 DT A 3 14.893 17.991 15.174 1.00 11.40 C ATOM 57 C7 DT A 3 13.983 19.195 15.057 1.00 11.51 C ATOM 58 C6 DT A 3 16.212 18.134 15.439 1.00 12.05 C ATOM 59 P DA A 4 22.486 18.114 13.888 1.00 21.87 P ATOM 60 OP1 DA A 4 23.820 17.854 14.478 1.00 17.46 O ATOM 61 OP2 DA A 4 21.638 18.932 13.017 1.00 17.55 O ATOM 62 O5' DA A 4 21.862 16.677 13.394 1.00 15.13 O ATOM 63 C5' DA A 4 22.450 15.473 13.825 1.00 14.84 C ATOM 64 C4' DA A 4 21.845 14.364 13.012 1.00 14.61 C ATOM 65 O4' DA A 4 20.473 14.240 13.023 1.00 14.31 O ATOM 66 C3' DA A 4 22.276 14.554 11.509 1.00 14.65 C ATOM 67 O3' DA A 4 22.923 13.324 11.217 1.00 16.31 O ATOM 68 C2' DA A 4 21.016 14.789 10.803 1.00 14.62 C ATOM 69 C1' DA A 4 19.963 14.190 11.642 1.00 12.94 C ATOM 70 N9 DA A 4 18.702 14.910 11.652 1.00 12.04 N ATOM 71 C8 DA A 4 18.481 16.265 11.817 1.00 11.42 C ATOM 72 N7 DA A 4 17.277 16.624 11.806 1.00 11.09 N ATOM 73 C5 DA A 4 16.576 15.417 11.764 1.00 10.76 C ATOM 74 C6 DA A 4 15.181 15.159 11.716 1.00 10.19 C ATOM 75 N6 DA A 4 14.263 16.086 11.785 1.00 10.34 N ATOM 76 N1 DA A 4 14.873 13.876 11.636 1.00 9.91 N ATOM 77 C2 DA A 4 15.784 12.885 11.578 1.00 10.41 C ATOM 78 N3 DA A 4 17.165 13.036 11.583 1.00 11.55 N ATOM 79 C4 DA A 4 17.436 14.364 11.684 1.00 11.00 C ATOM 80 P DC A 5 23.635 12.829 9.841 1.00 19.93 P ATOM 81 OP1 DC A 5 24.520 11.655 10.011 1.00 19.58 O ATOM 82 OP2 DC A 5 24.229 14.092 9.464 1.00 20.27 O ATOM 83 O5' DC A 5 22.419 12.568 8.726 1.00 16.92 O ATOM 84 C5' DC A 5 21.741 11.299 8.933 1.00 16.11 C ATOM 85 C4' DC A 5 20.599 11.299 7.945 1.00 15.20 C ATOM 86 O4' DC A 5 19.554 12.106 8.508 1.00 14.51 O ATOM 87 C3' DC A 5 20.932 11.899 6.575 1.00 15.37 C ATOM 88 O3' DC A 5 20.394 11.120 5.502 1.00 15.40 O ATOM 89 C2' DC A 5 20.304 13.296 6.633 1.00 14.69 C ATOM 90 C1' DC A 5 19.086 12.938 7.489 1.00 14.17 C ATOM 91 N1 DC A 5 18.335 14.111 7.903 1.00 13.34 N ATOM 92 C2 DC A 5 16.971 13.941 8.136 1.00 12.34 C ATOM 93 O2 DC A 5 16.534 12.775 8.163 1.00 12.82 O ATOM 94 N3 DC A 5 16.207 15.027 8.365 1.00 12.53 N ATOM 95 C4 DC A 5 16.784 16.274 8.397 1.00 12.49 C ATOM 96 N4 DC A 5 16.019 17.363 8.588 1.00 11.84 N ATOM 97 C5 DC A 5 18.164 16.453 8.174 1.00 12.82 C ATOM 98 C6 DC A 5 18.910 15.363 7.940 1.00 13.02 C ATOM 99 P DG A 6 21.153 9.888 4.769 1.00 17.70 P ATOM 100 OP1 DG A 6 21.764 8.902 5.539 1.00 21.19 O ATOM 101 OP2 DG A 6 21.817 10.854 3.776 1.00 18.75 O ATOM 102 O5' DG A 6 19.876 9.190 3.909 1.00 15.84 O ATOM 103 C5' DG A 6 19.092 8.148 4.461 1.00 14.10 C ATOM 104 C4' DG A 6 18.041 7.728 3.489 1.00 13.70 C ATOM 105 O4' DG A 6 17.232 8.815 3.123 1.00 13.30 O ATOM 106 C3' DG A 6 18.607 7.145 2.162 1.00 13.32 C ATOM 107 O3' DG A 6 17.767 6.106 1.737 1.00 14.89 O ATOM 108 C2' DG A 6 18.688 8.423 1.365 1.00 12.96 C ATOM 109 C1' DG A 6 17.400 9.078 1.662 1.00 11.79 C ATOM 110 N9 DG A 6 17.428 10.540 1.620 1.00 10.02 N ATOM 111 C8 DG A 6 18.478 11.336 1.609 1.00 9.77 C ATOM 112 N7 DG A 6 18.229 12.602 1.662 1.00 10.09 N ATOM 113 C5 DG A 6 16.812 12.616 1.583 1.00 9.64 C ATOM 114 C6 DG A 6 15.876 13.702 1.567 1.00 8.67 C ATOM 115 O6 DG A 6 16.249 14.901 1.546 1.00 10.50 O ATOM 116 N1 DG A 6 14.588 13.361 1.524 1.00 8.97 N ATOM 117 C2 DG A 6 14.170 12.047 1.535 1.00 7.86 C ATOM 118 N2 DG A 6 12.873 11.767 1.508 1.00 8.72 N ATOM 119 N3 DG A 6 15.016 10.986 1.588 1.00 8.78 N ATOM 120 C4 DG A 6 16.299 11.375 1.551 1.00 9.22 C TER 121 DG A 6 HETATM 122 C1 MAR A 7 15.226 18.271 5.056 1.00 12.99 C HETATM 123 C2 MAR A 7 16.361 19.069 5.088 1.00 13.61 C HETATM 124 C3 MAR A 7 17.691 18.495 5.024 1.00 14.00 C HETATM 125 C4 MAR A 7 17.784 17.066 4.955 1.00 12.79 C HETATM 126 O4 MAR A 7 18.907 16.386 4.939 1.00 13.93 O HETATM 127 C5 MAR A 7 16.543 16.338 4.950 1.00 12.73 C HETATM 128 C6 MAR A 7 16.624 14.837 4.875 1.00 11.69 C HETATM 129 O6 MAR A 7 17.658 14.123 4.801 1.00 13.13 O HETATM 130 C7 MAR A 7 15.338 14.114 4.923 1.00 11.01 C HETATM 131 C8 MAR A 7 15.355 12.745 4.854 1.00 10.33 C HETATM 132 O8 MAR A 7 16.442 12.027 4.849 1.00 10.44 O HETATM 133 C9 MAR A 7 14.139 12.036 4.897 1.00 11.49 C HETATM 134 C10 MAR A 7 14.198 10.490 4.902 1.00 13.09 C HETATM 135 O10 MAR A 7 14.817 10.243 6.251 1.00 15.53 O HETATM 136 C11 MAR A 7 12.871 9.804 4.780 1.00 13.11 C HETATM 137 C12 MAR A 7 11.691 10.551 5.359 1.00 13.76 C HETATM 138 O12 MAR A 7 11.717 10.624 6.851 1.00 13.04 O HETATM 139 C13 MAR A 7 10.414 9.775 5.114 1.00 14.22 C HETATM 140 O13 MAR A 7 9.731 10.224 4.185 1.00 16.46 O HETATM 141 C14 MAR A 7 9.820 8.790 6.102 1.00 15.27 C HETATM 142 C15 MAR A 7 11.565 12.025 4.881 1.00 12.46 C HETATM 143 C16 MAR A 7 12.879 12.638 4.865 1.00 10.71 C HETATM 144 C17 MAR A 7 12.910 14.030 4.923 1.00 10.50 C HETATM 145 O17 MAR A 7 11.691 14.688 4.913 1.00 11.26 O HETATM 146 C18 MAR A 7 14.025 14.828 4.945 1.00 10.67 C HETATM 147 C19 MAR A 7 14.022 16.265 4.982 1.00 11.40 C HETATM 148 O19 MAR A 7 12.994 17.010 4.976 1.00 12.44 O HETATM 149 C20 MAR A 7 15.316 16.915 5.008 1.00 11.92 C HETATM 150 C21 MAR A 7 20.206 17.201 5.162 1.00 14.07 C HETATM 151 C1' MAR A 7 15.697 9.184 6.379 1.00 18.13 C HETATM 152 C2' MAR A 7 16.747 9.481 7.419 1.00 19.28 C HETATM 153 C3' MAR A 7 16.025 9.672 8.806 1.00 21.07 C HETATM 154 N3' MAR A 7 17.190 9.997 9.756 1.00 20.00 N HETATM 155 C4' MAR A 7 15.221 8.459 9.151 1.00 21.73 C HETATM 156 O4' MAR A 7 16.033 7.238 9.321 1.00 24.67 O HETATM 157 C5' MAR A 7 14.170 8.210 8.067 1.00 21.43 C HETATM 158 O5' MAR A 7 14.915 7.974 6.761 1.00 19.90 O HETATM 159 C6' MAR A 7 13.344 6.890 8.174 1.00 21.48 C HETATM 160 CB1 MAR A 7 15.568 6.378 10.394 1.00 26.93 C HETATM 161 CB2 MAR A 7 15.257 4.986 9.894 1.00 27.97 C HETATM 162 CB3 MAR A 7 16.610 4.406 9.331 1.00 28.72 C HETATM 163 OB3 MAR A 7 16.243 3.171 8.588 1.00 29.58 O HETATM 164 CB4 MAR A 7 17.523 4.193 10.574 1.00 28.84 C HETATM 165 OB4 MAR A 7 18.747 3.591 9.910 1.00 29.21 O HETATM 166 CB5 MAR A 7 17.826 5.563 11.185 1.00 28.53 C HETATM 167 OB5 MAR A 7 16.523 6.294 11.509 1.00 27.99 O HETATM 168 CB6 MAR A 7 18.498 5.571 12.566 1.00 28.91 C HETATM 169 MG MG A 8 19.683 14.775 2.560 1.00 28.07 MG HETATM 170 O HOH A 9 17.926 16.876 1.168 1.00 27.66 O HETATM 171 O HOH A 10 22.282 13.484 3.149 1.00 33.88 O HETATM 172 O HOH A 11 21.288 16.492 0.945 1.00 37.84 O HETATM 173 O HOH A 12 16.772 19.215 12.088 1.00 34.80 O HETATM 174 O HOH A 13 10.518 17.638 12.008 1.00 41.48 O HETATM 175 O HOH A 14 19.601 19.884 8.344 1.00 45.42 O HETATM 176 O HOH A 15 22.425 15.658 7.388 1.00 25.05 O HETATM 177 O HOH A 16 9.809 5.501 7.456 1.00 33.42 O HETATM 178 O HOH A 17 11.383 19.134 5.412 1.00 47.75 O HETATM 179 O HOH A 18 20.949 23.794 15.593 1.00 36.64 O HETATM 180 O HOH A 19 9.070 11.991 1.652 1.00 27.06 O HETATM 181 O HOH A 20 11.537 9.367 1.046 1.00 36.80 O HETATM 182 O HOH A 21 14.226 8.428 1.561 1.00 24.31 O HETATM 183 O HOH A 22 26.030 16.593 12.964 1.00 46.92 O HETATM 184 O HOH A 23 16.954 19.943 8.816 1.00 46.09 O HETATM 185 O HOH A 24 16.887 24.248 7.127 1.00 33.63 O HETATM 186 O HOH A 25 23.719 14.666 5.030 1.00 45.85 O HETATM 187 O HOH A 26 14.736 -3.266 0.473 1.00 49.56 O HETATM 188 O HOH A 27 20.187 14.666 -1.275 1.00 43.23 O HETATM 189 O HOH A 28 21.912 12.610 0.080 1.00 54.19 O HETATM 190 O HOH A 29 17.321 21.246 13.575 1.00 35.22 O HETATM 191 O HOH A 30 16.341 9.481 12.412 1.00 28.46 O HETATM 192 O HOH A 31 21.400 18.414 9.400 1.00 39.47 O HETATM 193 O HOH A 32 11.106 24.587 8.126 1.00 45.59 O HETATM 194 O HOH A 33 5.860 8.515 6.490 1.00 41.20 O HETATM 195 O HOH A 34 22.806 10.008 0.908 1.00 44.41 O HETATM 196 O HOH A 35 19.952 21.184 12.561 1.00 43.55 O HETATM 197 O HOH A 36 7.089 17.512 11.153 1.00 49.31 O HETATM 198 O HOH A 37 14.417 6.428 3.484 1.00 45.45 O HETATM 199 O HOH A 38 24.027 15.683 8.428 1.00 51.19 O HETATM 200 O HOH A 39 24.279 17.747 9.900 1.00 42.42 O HETATM 201 O HOH A 40 12.336 19.246 11.270 1.00 37.15 O HETATM 202 O HOH A 41 16.114 5.753 6.017 1.00 41.27 O HETATM 203 O HOH A 42 22.349 19.352 6.352 1.00 43.45 O HETATM 204 O HOH A 43 13.229 3.274 5.591 1.00 46.72 O HETATM 205 O HOH A 44 11.837 0.213 1.121 1.00 52.87 O HETATM 206 O HOH A 45 14.139 25.441 11.764 1.00 50.49 O HETATM 207 O HOH A 46 10.885 21.615 10.117 1.00 48.66 O HETATM 208 O HOH A 47 13.739 23.324 9.124 1.00 51.09 O HETATM 209 O HOH A 48 11.540 25.929 4.377 1.00 53.22 O HETATM 210 O HOH A 49 9.672 18.484 9.565 1.00 58.28 O HETATM 211 O HOH A 50 14.294 0.064 7.754 1.00 62.61 O HETATM 212 O HOH A 51 6.820 5.260 6.877 1.00 53.49 O HETATM 213 O HOH A 52 14.974 26.013 6.203 1.00 64.59 O HETATM 214 O HOH A 53 7.008 8.047 3.681 1.00 53.20 O HETATM 215 O HOH A 54 8.815 5.666 3.303 1.00 55.71 O HETATM 216 O HOH A 55 11.635 3.375 2.289 1.00 49.21 O HETATM 217 O HOH A 56 6.137 12.476 0.887 1.00 48.23 O HETATM 218 O HOH A 57 10.633 5.613 0.637 1.00 43.93 O HETATM 219 O HOH A 58 9.339 22.027 12.481 1.00 57.01 O HETATM 220 O HOH A 59 13.857 20.979 12.162 1.00 59.02 O HETATM 221 O HOH A 60 8.512 19.607 12.051 1.00 49.76 O HETATM 222 O HOH A 61 24.089 9.098 11.312 1.00 51.69 O HETATM 223 O HOH A 62 13.652 2.678 10.325 1.00 60.04 O HETATM 224 O HOH A 63 24.624 12.260 3.128 1.00 57.29 O HETATM 225 O HOH A 64 11.025 21.853 18.976 1.00 39.71 O HETATM 226 O HOH A 65 13.330 24.391 18.928 1.00 50.48 O HETATM 227 O HOH A 66 23.063 7.425 8.673 1.00 51.04 O HETATM 228 O HOH A 67 20.397 7.476 8.247 1.00 50.95 O HETATM 229 O HOH A 68 29.128 13.666 -4.418 1.00 62.28 O HETATM 230 O HOH A 69 15.613 1.196 2.555 1.00 59.59 O HETATM 231 O HOH A 70 27.444 15.711 0.223 1.00 61.55 O HETATM 232 O HOH A 71 21.019 6.389 11.233 1.00 55.81 O HETATM 233 O HOH A 72 10.417 20.094 7.738 1.00 49.53 O HETATM 234 O HOH A 73 12.274 22.786 5.587 1.00 54.79 O HETATM 235 O HOH A 74 11.123 6.680 4.121 1.00 52.39 O HETATM 236 O HOH A 75 10.862 3.339 9.650 1.00 47.15 O HETATM 237 O HOH A 76 11.610 27.514 11.811 1.00 54.69 O CONECT 112 169 CONECT 122 123 149 CONECT 123 122 124 CONECT 124 123 125 CONECT 125 124 126 127 CONECT 126 125 150 169 CONECT 127 125 128 149 CONECT 128 127 129 130 CONECT 129 128 169 CONECT 130 128 131 146 CONECT 131 130 132 133 CONECT 132 131 CONECT 133 131 134 143 CONECT 134 133 135 136 CONECT 135 134 151 CONECT 136 134 137 CONECT 137 136 138 139 142 CONECT 138 137 CONECT 139 137 140 141 CONECT 140 139 CONECT 141 139 CONECT 142 137 143 CONECT 143 133 142 144 CONECT 144 143 145 146 CONECT 145 144 CONECT 146 130 144 147 CONECT 147 146 148 149 CONECT 148 147 CONECT 149 122 127 147 CONECT 150 126 CONECT 151 135 152 158 CONECT 152 151 153 CONECT 153 152 154 155 CONECT 154 153 CONECT 155 153 156 157 CONECT 156 155 160 CONECT 157 155 158 159 CONECT 158 151 157 CONECT 159 157 CONECT 160 156 161 167 CONECT 161 160 162 CONECT 162 161 163 164 CONECT 163 162 CONECT 164 162 165 166 CONECT 165 164 CONECT 166 164 167 168 CONECT 167 160 166 CONECT 168 166 CONECT 169 112 126 129 170 CONECT 169 171 172 CONECT 170 169 CONECT 171 169 CONECT 172 169 MASTER 322 0 2 0 0 0 5 6 236 1 53 1 END