HEADER DNA 23-APR-91 1D38 TITLE INFLUENCE OF AGLYCONE MODIFICATIONS ON THE BINDING OF ANTHRACYCLINE TITLE 2 DRUGS TO DNA: THE MOLECULAR STRUCTURE OF IDARUBICIN AND 4-O-DEMETHYL- TITLE 3 11-DEOXYDOXORUBICIN COMPLEXED TO D(CGATCG) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*GP*AP*TP*CP*G)-3'); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA EXPDTA X-RAY DIFFRACTION AUTHOR Y.-G.GAO,A.H.-J.WANG REVDAT 4 07-FEB-24 1D38 1 REMARK LINK REVDAT 3 24-FEB-09 1D38 1 VERSN REVDAT 2 01-APR-03 1D38 1 JRNL REVDAT 1 15-APR-92 1D38 0 JRNL AUTH Y.G.GAO,A.H.WANG JRNL TITL INFLUENCE OF AGLYCONE MODIFICATIONS ON THE BINDING OF JRNL TITL 2 ANTHRACYCLINE DRUGS TO DNA: THE MOLECULAR STRUCTURE OF JRNL TITL 3 IDARUBICIN AND 4-O-DEMETHYL-11-DEOXYDOXORUBICIN COMPLEXED TO JRNL TITL 4 D(CGATCG). JRNL REF ANTI-CANCER DRUG DES. V. 6 137 1991 JRNL REFN ISSN 0266-9536 JRNL PMID 1872945 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.-G.GAO,Y.-C.LIAW,Y.-K.LI,G.A.VAN DER MAREL,J.H.VAN BOOM, REMARK 1 AUTH 2 A.H.-J.WANG REMARK 1 TITL FACILE FORMATION OF CROSSLINKED ADDUCT BETWEEN DNA AND THE REMARK 1 TITL 2 DAUNORUBICIN DERIVATIVE MAR70 MEDIATED BY FORMALDEHYDE: REMARK 1 TITL 3 MOLECULAR STRUCTURE OF THE MAR70-D(CGTNACG) COVALENT ADDUCT REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 88 4845 1991 REMARK 1 REFN ISSN 0027-8424 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NUCLSQ REMARK 3 AUTHORS : WESTHOF,DUMAS,MORAS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 1724 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 120 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 60 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 SUGAR-BASE BOND DISTANCE (A) : NULL ; NULL REMARK 3 SUGAR-BASE BOND ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 PHOSPHATE BONDS DISTANCE (A) : NULL ; NULL REMARK 3 PHOSPHATE BOND ANGLE, H-BOND (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION CONTACT (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION CONTACT (A) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 SUGAR-BASE BONDS (A**2) : NULL ; NULL REMARK 3 SUGAR-BASE ANGLES (A**2) : NULL ; NULL REMARK 3 PHOSPHATE BONDS (A**2) : NULL ; NULL REMARK 3 PHOSPHATE BOND ANGLE, H-BOND (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1D38 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB. REMARK 100 THE DEPOSITION ID IS D_1000172642. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 298.00 REMARK 200 PH : 6.00 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : DIFFRACTOMETER REMARK 200 DETECTOR MANUFACTURER : RIGAKU AFC-5R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 1724 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.00, VAPOR DIFFUSION, TEMPERATURE REMARK 280 298.00K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.84000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 14.06500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 14.06500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 13.42000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 14.06500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 14.06500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.26000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 14.06500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 14.06500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 13.42000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 14.06500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 14.06500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 40.26000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 26.84000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 28.13000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 28.13000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 26.84000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 31 O HOH A 62 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 48 O HOH A 67 7555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG A 2 P DG A 2 O5' 0.065 REMARK 500 DT A 4 P DT A 4 O5' 0.066 REMARK 500 DT A 4 O4' DT A 4 C4' -0.061 REMARK 500 DG A 6 C6 DG A 6 N1 -0.044 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC A 1 C2 - N3 - C4 ANGL. DEV. = 3.6 DEGREES REMARK 500 DC A 1 N3 - C2 - O2 ANGL. DEV. = 5.2 DEGREES REMARK 500 DC A 1 C3' - O3' - P ANGL. DEV. = 7.9 DEGREES REMARK 500 DG A 2 O3' - P - OP2 ANGL. DEV. = 9.7 DEGREES REMARK 500 DG A 2 O5' - P - OP1 ANGL. DEV. = 9.3 DEGREES REMARK 500 DG A 2 O5' - P - OP2 ANGL. DEV. = -9.0 DEGREES REMARK 500 DG A 2 O5' - C5' - C4' ANGL. DEV. = -7.1 DEGREES REMARK 500 DG A 2 P - O5' - C5' ANGL. DEV. = -13.6 DEGREES REMARK 500 DG A 2 C3' - C2' - C1' ANGL. DEV. = -6.8 DEGREES REMARK 500 DG A 2 O4' - C1' - N9 ANGL. DEV. = 5.6 DEGREES REMARK 500 DG A 2 C6 - N1 - C2 ANGL. DEV. = -4.6 DEGREES REMARK 500 DG A 2 C5 - C6 - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DG A 2 N1 - C6 - O6 ANGL. DEV. = -3.8 DEGREES REMARK 500 DA A 3 OP1 - P - OP2 ANGL. DEV. = 10.8 DEGREES REMARK 500 DA A 3 O5' - C5' - C4' ANGL. DEV. = -8.3 DEGREES REMARK 500 DA A 3 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA A 3 C6 - N1 - C2 ANGL. DEV. = 4.3 DEGREES REMARK 500 DA A 3 N1 - C2 - N3 ANGL. DEV. = -3.8 DEGREES REMARK 500 DA A 3 C5 - C6 - N1 ANGL. DEV. = -4.1 DEGREES REMARK 500 DT A 4 N1 - C2 - N3 ANGL. DEV. = 4.2 DEGREES REMARK 500 DT A 4 C2 - N3 - C4 ANGL. DEV. = -4.1 DEGREES REMARK 500 DT A 4 C3' - O3' - P ANGL. DEV. = 7.7 DEGREES REMARK 500 DC A 5 O5' - C5' - C4' ANGL. DEV. = -5.4 DEGREES REMARK 500 DC A 5 C3' - C2' - C1' ANGL. DEV. = -5.6 DEGREES REMARK 500 DC A 5 O4' - C1' - N1 ANGL. DEV. = 7.8 DEGREES REMARK 500 DG A 6 O4' - C1' - N9 ANGL. DEV. = -6.4 DEGREES REMARK 500 DG A 6 C5 - C6 - O6 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 8 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 6 N7 REMARK 620 2 HOH A 9 O 98.8 REMARK 620 3 HOH A 10 O 134.8 104.2 REMARK 620 4 HOH A 11 O 142.2 99.2 71.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DM5 A 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 8 DBREF 1D38 A 1 6 PDB 1D38 1D38 1 6 SEQRES 1 A 6 DC DG DA DT DC DG HET DM5 A 7 36 HET MG A 8 1 HETNAM DM5 IDARUBICIN HETNAM MG MAGNESIUM ION HETSYN DM5 4-DEMETHOXY-DAUNORUBICIN FORMUL 2 DM5 C26 H27 N O9 FORMUL 3 MG MG 2+ FORMUL 4 HOH *60(H2 O) LINK N7 DG A 6 MG MG A 8 1555 1555 2.63 LINK MG MG A 8 O HOH A 9 1555 1555 2.79 LINK MG MG A 8 O HOH A 10 1555 7555 2.85 LINK MG MG A 8 O HOH A 11 1555 1555 2.79 SITE 1 AC1 10 DC A 1 DG A 2 DA A 3 DT A 4 SITE 2 AC1 10 DC A 5 DG A 6 MG A 8 HOH A 29 SITE 3 AC1 10 HOH A 33 HOH A 64 SITE 1 AC2 5 DG A 6 DM5 A 7 HOH A 9 HOH A 10 SITE 2 AC2 5 HOH A 11 CRYST1 28.130 28.130 53.680 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.035549 0.000000 0.000000 0.00000 SCALE2 0.000000 0.035549 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018629 0.00000 ATOM 1 O5' DC A 1 9.454 20.611 22.873 1.00 21.14 O ATOM 2 C5' DC A 1 9.654 20.729 24.290 1.00 20.63 C ATOM 3 C4' DC A 1 11.151 20.923 24.467 1.00 20.68 C ATOM 4 O4' DC A 1 11.601 19.882 25.321 1.00 20.45 O ATOM 5 C3' DC A 1 12.059 20.889 23.233 1.00 20.66 C ATOM 6 O3' DC A 1 13.201 21.761 23.394 1.00 21.23 O ATOM 7 C2' DC A 1 12.493 19.438 23.136 1.00 20.31 C ATOM 8 C1' DC A 1 12.546 19.055 24.602 1.00 19.65 C ATOM 9 N1 DC A 1 12.076 17.688 24.800 1.00 19.10 N ATOM 10 C2 DC A 1 13.064 16.720 25.036 1.00 18.58 C ATOM 11 O2 DC A 1 14.211 17.103 25.090 1.00 18.25 O ATOM 12 N3 DC A 1 12.619 15.452 25.192 1.00 18.34 N ATOM 13 C4 DC A 1 11.294 15.100 25.122 1.00 18.26 C ATOM 14 N4 DC A 1 10.945 13.832 25.289 1.00 18.03 N ATOM 15 C5 DC A 1 10.301 16.088 24.859 1.00 18.45 C ATOM 16 C6 DC A 1 10.746 17.362 24.725 1.00 18.57 C ATOM 17 P DG A 2 13.812 22.782 22.320 1.00 25.81 P ATOM 18 OP1 DG A 2 14.706 23.550 23.265 1.00 24.90 O ATOM 19 OP2 DG A 2 12.900 23.643 21.493 1.00 26.02 O ATOM 20 O5' DG A 2 14.473 21.933 21.059 1.00 22.47 O ATOM 21 C5' DG A 2 15.761 21.376 21.531 1.00 22.17 C ATOM 22 C4' DG A 2 16.178 20.493 20.366 1.00 21.91 C ATOM 23 O4' DG A 2 15.306 19.368 20.366 1.00 21.64 O ATOM 24 C3' DG A 2 16.031 21.157 19.024 1.00 21.78 C ATOM 25 O3' DG A 2 17.066 20.740 18.138 1.00 22.34 O ATOM 26 C2' DG A 2 14.650 20.642 18.536 1.00 21.60 C ATOM 27 C1' DG A 2 14.844 19.204 19.030 1.00 21.05 C ATOM 28 N9 DG A 2 13.649 18.397 18.917 1.00 20.48 N ATOM 29 C8 DG A 2 12.327 18.743 18.890 1.00 20.19 C ATOM 30 N7 DG A 2 11.528 17.722 18.729 1.00 20.17 N ATOM 31 C5 DG A 2 12.388 16.605 18.616 1.00 19.88 C ATOM 32 C6 DG A 2 12.135 15.216 18.455 1.00 19.74 C ATOM 33 O6 DG A 2 11.049 14.630 18.348 1.00 19.49 O ATOM 34 N1 DG A 2 13.272 14.408 18.439 1.00 19.39 N ATOM 35 C2 DG A 2 14.515 14.957 18.568 1.00 19.36 C ATOM 36 N2 DG A 2 15.531 14.099 18.563 1.00 19.25 N ATOM 37 N3 DG A 2 14.796 16.245 18.724 1.00 19.56 N ATOM 38 C4 DG A 2 13.696 17.010 18.745 1.00 19.96 C ATOM 39 P DA A 3 18.012 21.789 17.280 1.00 24.56 P ATOM 40 OP1 DA A 3 18.692 22.588 18.434 1.00 26.08 O ATOM 41 OP2 DA A 3 17.142 22.234 16.222 1.00 23.93 O ATOM 42 O5' DA A 3 19.221 20.825 16.700 1.00 20.00 O ATOM 43 C5' DA A 3 20.014 20.214 17.773 1.00 18.78 C ATOM 44 C4' DA A 3 20.355 18.870 17.156 1.00 18.67 C ATOM 45 O4' DA A 3 19.190 18.045 17.274 1.00 18.32 O ATOM 46 C3' DA A 3 20.718 18.886 15.691 1.00 18.50 C ATOM 47 O3' DA A 3 21.854 18.026 15.395 1.00 19.20 O ATOM 48 C2' DA A 3 19.491 18.363 14.982 1.00 18.33 C ATOM 49 C1' DA A 3 18.965 17.367 16.040 1.00 17.66 C ATOM 50 N9 DA A 3 17.545 17.171 15.825 1.00 17.07 N ATOM 51 C8 DA A 3 16.600 18.194 15.825 1.00 16.78 C ATOM 52 N7 DA A 3 15.398 17.753 15.546 1.00 16.97 N ATOM 53 C5 DA A 3 15.545 16.369 15.401 1.00 16.64 C ATOM 54 C6 DA A 3 14.591 15.362 15.116 1.00 16.52 C ATOM 55 N6 DA A 3 13.311 15.573 14.961 1.00 16.24 N ATOM 56 N1 DA A 3 15.123 14.124 15.020 1.00 16.30 N ATOM 57 C2 DA A 3 16.453 13.874 15.186 1.00 16.38 C ATOM 58 N3 DA A 3 17.382 14.785 15.433 1.00 16.40 N ATOM 59 C4 DA A 3 16.861 16.006 15.551 1.00 16.68 C ATOM 60 P DT A 4 22.690 18.119 14.064 1.00 22.45 P ATOM 61 OP1 DT A 4 24.172 18.006 14.418 1.00 24.17 O ATOM 62 OP2 DT A 4 22.248 19.140 13.184 1.00 24.93 O ATOM 63 O5' DT A 4 22.332 16.729 13.232 1.00 21.69 O ATOM 64 C5' DT A 4 22.451 15.497 13.989 1.00 20.97 C ATOM 65 C4' DT A 4 21.815 14.422 13.103 1.00 20.80 C ATOM 66 O4' DT A 4 20.434 14.479 13.195 1.00 20.51 O ATOM 67 C3' DT A 4 22.141 14.487 11.622 1.00 20.96 C ATOM 68 O3' DT A 4 22.861 13.260 11.300 1.00 21.68 O ATOM 69 C2' DT A 4 20.811 14.647 10.908 1.00 20.52 C ATOM 70 C1' DT A 4 19.795 14.192 11.938 1.00 20.00 C ATOM 71 N1 DT A 4 18.518 14.909 11.890 1.00 19.50 N ATOM 72 C2 DT A 4 17.353 14.133 11.810 1.00 19.16 C ATOM 73 O2 DT A 4 17.404 12.926 11.751 1.00 19.23 O ATOM 74 N3 DT A 4 16.166 14.754 11.761 1.00 18.81 N ATOM 75 C4 DT A 4 16.031 16.088 11.858 1.00 19.03 C ATOM 76 O4 DT A 4 14.870 16.583 11.799 1.00 18.99 O ATOM 77 C5 DT A 4 17.216 16.889 11.933 1.00 19.11 C ATOM 78 C7 DT A 4 17.081 18.380 12.008 1.00 19.03 C ATOM 79 C6 DT A 4 18.405 16.265 11.965 1.00 19.25 C ATOM 80 P DC A 5 23.730 12.968 10.017 1.00 24.81 P ATOM 81 OP1 DC A 5 24.625 11.795 10.350 1.00 26.12 O ATOM 82 OP2 DC A 5 24.242 14.239 9.523 1.00 25.06 O ATOM 83 O5' DC A 5 22.552 12.554 8.954 1.00 22.69 O ATOM 84 C5' DC A 5 21.871 11.258 9.131 1.00 22.13 C ATOM 85 C4' DC A 5 20.726 11.300 8.116 1.00 21.92 C ATOM 86 O4' DC A 5 19.742 12.189 8.702 1.00 21.55 O ATOM 87 C3' DC A 5 21.092 11.798 6.748 1.00 21.87 C ATOM 88 O3' DC A 5 20.512 11.092 5.658 1.00 22.34 O ATOM 89 C2' DC A 5 20.541 13.260 6.769 1.00 21.64 C ATOM 90 C1' DC A 5 19.292 12.971 7.623 1.00 21.15 C ATOM 91 N1 DC A 5 18.608 14.208 7.971 1.00 20.77 N ATOM 92 C2 DC A 5 17.224 14.051 8.197 1.00 20.58 C ATOM 93 O2 DC A 5 16.774 12.914 8.235 1.00 20.25 O ATOM 94 N3 DC A 5 16.481 15.159 8.396 1.00 20.34 N ATOM 95 C4 DC A 5 17.044 16.403 8.417 1.00 20.44 C ATOM 96 N4 DC A 5 16.287 17.491 8.632 1.00 20.14 N ATOM 97 C5 DC A 5 18.442 16.555 8.197 1.00 20.37 C ATOM 98 C6 DC A 5 19.159 15.449 7.950 1.00 20.61 C ATOM 99 P DG A 6 21.348 10.124 4.611 1.00 24.42 P ATOM 100 OP1 DG A 6 21.922 9.252 5.771 1.00 25.69 O ATOM 101 OP2 DG A 6 22.161 11.064 3.811 1.00 23.22 O ATOM 102 O5' DG A 6 20.285 9.334 3.779 1.00 21.10 O ATOM 103 C5' DG A 6 19.359 8.470 4.466 1.00 20.36 C ATOM 104 C4' DG A 6 18.344 7.927 3.473 1.00 20.11 C ATOM 105 O4' DG A 6 17.379 8.962 3.162 1.00 19.99 O ATOM 106 C3' DG A 6 18.771 7.407 2.131 1.00 19.77 C ATOM 107 O3' DG A 6 17.953 6.265 1.847 1.00 19.87 O ATOM 108 C2' DG A 6 18.495 8.515 1.127 1.00 19.57 C ATOM 109 C1' DG A 6 17.317 9.199 1.734 1.00 19.29 C ATOM 110 N9 DG A 6 17.365 10.664 1.675 1.00 18.84 N ATOM 111 C8 DG A 6 18.439 11.485 1.841 1.00 18.86 C ATOM 112 N7 DG A 6 18.147 12.760 1.847 1.00 18.96 N ATOM 113 C5 DG A 6 16.763 12.774 1.696 1.00 18.32 C ATOM 114 C6 DG A 6 15.863 13.879 1.621 1.00 18.11 C ATOM 115 O6 DG A 6 16.197 15.069 1.680 1.00 17.65 O ATOM 116 N1 DG A 6 14.577 13.494 1.514 1.00 17.67 N ATOM 117 C2 DG A 6 14.161 12.197 1.487 1.00 17.88 C ATOM 118 N2 DG A 6 12.886 11.986 1.406 1.00 17.30 N ATOM 119 N3 DG A 6 14.976 11.106 1.535 1.00 18.13 N ATOM 120 C4 DG A 6 16.259 11.502 1.632 1.00 18.50 C TER 121 DG A 6 HETATM 122 C1 DM5 A 7 15.367 18.470 4.955 1.00 20.58 C HETATM 123 C2 DM5 A 7 16.557 19.193 4.949 1.00 20.65 C HETATM 124 C3 DM5 A 7 17.877 18.563 4.901 1.00 20.70 C HETATM 125 C4 DM5 A 7 17.936 17.089 4.896 1.00 20.50 C HETATM 126 C5 DM5 A 7 16.653 16.467 4.933 1.00 20.68 C HETATM 127 C6 DM5 A 7 16.673 14.957 4.944 1.00 20.61 C HETATM 128 O6 DM5 A 7 17.716 14.287 4.842 1.00 21.55 O HETATM 129 C7 DM5 A 7 15.393 14.256 4.955 1.00 20.56 C HETATM 130 C8 DM5 A 7 15.412 12.855 4.912 1.00 20.65 C HETATM 131 O8 DM5 A 7 16.538 12.197 4.906 1.00 20.72 O HETATM 132 C9 DM5 A 7 14.158 12.186 4.917 1.00 20.71 C HETATM 133 C10 DM5 A 7 14.192 10.611 4.906 1.00 21.09 C HETATM 134 O10 DM5 A 7 14.926 10.349 6.146 1.00 22.10 O HETATM 135 C11 DM5 A 7 12.833 10.006 4.874 1.00 20.81 C HETATM 136 C12 DM5 A 7 11.741 10.757 5.615 1.00 20.66 C HETATM 137 O12 DM5 A 7 11.975 10.892 7.070 1.00 20.48 O HETATM 138 C13 DM5 A 7 10.397 10.054 5.427 1.00 20.67 C HETATM 139 O13 DM5 A 7 9.896 10.267 4.311 1.00 20.56 O HETATM 140 C14 DM5 A 7 9.947 8.805 6.179 1.00 20.47 C HETATM 141 C15 DM5 A 7 11.590 12.211 4.998 1.00 20.54 C HETATM 142 C16 DM5 A 7 12.912 12.816 4.944 1.00 20.58 C HETATM 143 C17 DM5 A 7 12.951 14.223 4.960 1.00 20.48 C HETATM 144 O17 DM5 A 7 11.722 14.903 4.976 1.00 20.71 O HETATM 145 C18 DM5 A 7 14.090 15.002 4.949 1.00 20.36 C HETATM 146 C19 DM5 A 7 14.133 16.459 4.976 1.00 20.29 C HETATM 147 O19 DM5 A 7 13.117 17.128 5.014 1.00 20.20 O HETATM 148 C20 DM5 A 7 15.441 17.075 4.949 1.00 20.30 C HETATM 149 C1' DM5 A 7 15.674 9.204 6.383 1.00 22.66 C HETATM 150 C2' DM5 A 7 16.889 9.539 7.231 1.00 22.70 C HETATM 151 C3' DM5 A 7 16.377 10.104 8.557 1.00 23.11 C HETATM 152 N3' DM5 A 7 17.626 10.490 9.432 1.00 22.99 N HETATM 153 C4' DM5 A 7 15.542 9.021 9.271 1.00 23.02 C HETATM 154 O4' DM5 A 7 16.504 7.950 9.560 1.00 23.50 O HETATM 155 C5' DM5 A 7 14.363 8.602 8.422 1.00 23.08 C HETATM 156 O5' DM5 A 7 14.855 8.166 7.075 1.00 22.87 O HETATM 157 C6' DM5 A 7 13.609 7.325 8.889 1.00 22.99 C HETATM 158 MG MG A 8 19.910 14.625 2.399 1.00 36.59 MG HETATM 159 O HOH A 9 18.628 16.791 1.202 1.00 39.00 O HETATM 160 O HOH A 10 15.024 22.662 -1.798 1.00 42.40 O HETATM 161 O HOH A 11 21.123 15.950 4.531 1.00 44.99 O HETATM 162 O HOH A 12 16.338 8.703 13.908 1.00 55.74 O HETATM 163 O HOH A 13 9.016 14.785 12.180 1.00 28.30 O HETATM 164 O HOH A 14 13.072 18.912 11.895 1.00 37.21 O HETATM 165 O HOH A 15 10.386 17.418 11.917 1.00 38.51 O HETATM 166 O HOH A 16 13.559 22.408 16.168 1.00 51.89 O HETATM 167 O HOH A 17 14.810 3.418 10.897 1.00 54.44 O HETATM 168 O HOH A 18 19.998 8.234 10.741 1.00 37.85 O HETATM 169 O HOH A 19 20.825 18.794 10.553 1.00 32.79 O HETATM 170 O HOH A 20 11.525 3.058 10.242 1.00 42.22 O HETATM 171 O HOH A 21 18.147 21.027 10.146 1.00 55.42 O HETATM 172 O HOH A 22 9.505 19.697 8.653 1.00 46.07 O HETATM 173 O HOH A 23 17.263 3.505 8.471 1.00 48.49 O HETATM 174 O HOH A 24 16.048 21.036 8.417 1.00 60.11 O HETATM 175 O HOH A 25 19.016 20.135 7.467 1.00 47.67 O HETATM 176 O HOH A 26 2.008 12.450 8.245 1.00 70.51 O HETATM 177 O HOH A 27 6.490 17.041 7.360 1.00 41.80 O HETATM 178 O HOH A 28 10.456 5.083 7.397 1.00 41.80 O HETATM 179 O HOH A 29 18.411 6.321 7.950 1.00 59.71 O HETATM 180 O HOH A 30 21.519 18.895 7.193 1.00 53.38 O HETATM 181 O HOH A 31 23.131 15.573 7.757 1.00 51.07 O HETATM 182 O HOH A 32 7.699 19.452 6.592 1.00 51.64 O HETATM 183 O HOH A 33 11.857 19.379 5.717 1.00 43.08 O HETATM 184 O HOH A 34 17.106 23.455 6.189 1.00 48.18 O HETATM 185 O HOH A 35 8.760 23.252 8.192 1.00 48.79 O HETATM 186 O HOH A 36 4.957 10.788 -0.918 1.00 67.39 O HETATM 187 O HOH A 37 10.628 23.764 2.936 1.00 50.53 O HETATM 188 O HOH A 38 16.223 4.217 4.005 1.00 69.01 O HETATM 189 O HOH A 39 9.145 11.997 1.836 1.00 31.85 O HETATM 190 O HOH A 40 9.345 20.400 2.512 1.00 31.55 O HETATM 191 O HOH A 41 11.260 21.491 4.257 1.00 47.95 O HETATM 192 O HOH A 42 5.722 11.975 1.707 1.00 43.63 O HETATM 193 O HOH A 43 10.996 9.089 1.326 1.00 43.63 O HETATM 194 O HOH A 44 13.941 8.301 1.310 1.00 32.42 O HETATM 195 O HOH A 45 14.864 20.667 1.256 1.00 34.46 O HETATM 196 O HOH A 46 6.717 9.516 1.949 1.00 54.54 O HETATM 197 O HOH A 47 15.345 5.362 0.403 1.00 35.79 O HETATM 198 O HOH A 48 21.736 9.941 0.725 1.00 61.50 O HETATM 199 O HOH A 49 24.054 8.813 0.199 1.00 63.38 O HETATM 200 O HOH A 50 13.885 23.854 14.010 1.00 45.76 O HETATM 201 O HOH A 51 19.697 21.013 12.674 1.00 35.48 O HETATM 202 O HOH A 52 17.618 6.341 12.336 1.00 44.62 O HETATM 203 O HOH A 53 7.196 19.666 11.208 1.00 66.21 O HETATM 204 O HOH A 54 14.009 21.429 12.121 1.00 62.00 O HETATM 205 O HOH A 55 25.224 11.016 2.238 1.00 62.42 O HETATM 206 O HOH A 56 27.756 12.012 2.577 1.00 46.59 O HETATM 207 O HOH A 57 3.426 14.484 9.394 1.00 71.91 O HETATM 208 O HOH A 58 12.889 20.065 9.174 1.00 59.61 O HETATM 209 O HOH A 59 13.159 23.688 8.224 1.00 57.88 O HETATM 210 O HOH A 60 14.653 27.058 7.800 1.00 52.06 O HETATM 211 O HOH A 61 14.363 1.235 7.156 1.00 49.88 O HETATM 212 O HOH A 62 21.840 15.713 6.871 1.00 63.70 O HETATM 213 O HOH A 63 10.642 23.404 6.162 1.00 71.11 O HETATM 214 O HOH A 64 14.847 6.687 4.353 1.00 59.00 O HETATM 215 O HOH A 65 13.975 21.925 4.429 1.00 38.32 O HETATM 216 O HOH A 66 20.445 4.512 11.090 1.00 51.37 O HETATM 217 O HOH A 67 11.767 22.031 0.403 1.00 64.68 O HETATM 218 O HOH A 68 16.079 23.891 0.988 1.00 65.36 O CONECT 112 158 CONECT 122 123 148 CONECT 123 122 124 CONECT 124 123 125 CONECT 125 124 126 CONECT 126 125 127 148 CONECT 127 126 128 129 CONECT 128 127 CONECT 129 127 130 145 CONECT 130 129 131 132 CONECT 131 130 CONECT 132 130 133 142 CONECT 133 132 134 135 CONECT 134 133 149 CONECT 135 133 136 CONECT 136 135 137 138 141 CONECT 137 136 CONECT 138 136 139 140 CONECT 139 138 CONECT 140 138 CONECT 141 136 142 CONECT 142 132 141 143 CONECT 143 142 144 145 CONECT 144 143 CONECT 145 129 143 146 CONECT 146 145 147 148 CONECT 147 146 CONECT 148 122 126 146 CONECT 149 134 150 156 CONECT 150 149 151 CONECT 151 150 152 153 CONECT 152 151 CONECT 153 151 154 155 CONECT 154 153 CONECT 155 153 156 157 CONECT 156 149 155 CONECT 157 155 CONECT 158 112 159 161 CONECT 159 158 CONECT 161 158 MASTER 332 0 2 0 0 0 5 6 217 1 40 1 END