HEADER DNA 08-MAY-03 1UE2 TITLE CRYSTAL STRUCTURE OF D(GC38GAAAGCT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*GP*(C38)P*GP*AP*AP*AP*GP*CP*T)-3'; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS DNA, BASE-INTERCALATED DUPLEX, MINI-HAIRPIN STRUCTURE, SHEARED G:A KEYWDS 2 PAIR, ZIPPER-LIKE DUPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.SUNAMI,J.KONDO,I.HIRAO,K.WATANABA,K.MIURA,A.TAKENAKA REVDAT 6 27-DEC-23 1UE2 1 REMARK LINK REVDAT 5 22-OCT-14 1UE2 1 LINK VERSN REVDAT 4 15-SEP-09 1UE2 1 HET HETATM REVDAT 3 24-FEB-09 1UE2 1 VERSN REVDAT 2 17-FEB-04 1UE2 1 REMARK REVDAT 1 13-JAN-04 1UE2 0 JRNL AUTH T.SUNAMI,J.KONDO,I.HIRAO,K.WATANABE,K.I.MIURA,A.TAKENAKA JRNL TITL STRUCTURE OF D(GCGAAAGC) (HEXAGONAL FORM): A JRNL TITL 2 BASE-INTERCALATED DUPLEX AS A STABLE STRUCTURE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 60 90 2004 JRNL REFN ISSN 0907-4449 JRNL PMID 14684897 JRNL DOI 10.1107/S0907444903024703 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : G. PARKINSON ET AL., (1996) ACTACRYST. D52, REMARK 3 57-64 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 5111 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 613 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.45 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2336 REMARK 3 BIN FREE R VALUE : 0.3202 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 54 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 168 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 54 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 0.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UE2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-MAY-03. REMARK 100 THE DEPOSITION ID IS D_1000005718. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5553 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 18.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.26500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: HEAVY-ATOM METHOD REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2,6-DIAMINOPYRIDINE, MAGNESIUM REMARK 280 CHLORIDE, SODIUM CHLORIDE, HEXAAMMINECOBALT(III) CHLORIDE, 2- REMARK 280 METHYL-2,4-PENTANEDIOL, MEGA-10, SODIUM CACODYLATE, PH 6.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.37700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 32.37700 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.37700 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 32.37700 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 32.37700 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 32.37700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 18.36800 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 31.81431 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 97.13100 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 10 LIES ON A SPECIAL POSITION. REMARK 375 CO NCO A 766 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 774 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 775 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 776 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 777 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DT A 9 O5' C5' C4' O4' C3' O3' C2' REMARK 470 DT A 9 C1' N1 C2 O2 N3 C4 O4 REMARK 470 DT A 9 C5 C7 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DG A 3 0.06 SIDE CHAIN REMARK 500 DA A 6 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NCO A 766 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 767 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 768 O REMARK 620 2 HOH A 769 O 90.2 REMARK 620 3 HOH A 770 O 90.2 90.1 REMARK 620 4 HOH A 771 O 179.6 89.8 90.2 REMARK 620 5 HOH A 772 O 90.5 179.3 90.0 89.5 REMARK 620 6 HOH A 773 O 89.9 90.2 179.7 89.7 89.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 10 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 767 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCO A 766 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UE3 RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF D(GCGAAAGC) CONTAINING HEXAAMMINECOBALT REMARK 900 RELATED ID: 1UE4 RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF D(GCGAAAGC) DBREF 1UE2 A 1 9 PDB 1UE2 1UE2 1 9 SEQRES 1 A 9 DG C38 DG DA DA DA DG DC DT MODRES 1UE2 C38 A 2 DC HET C38 A 2 20 HET CL A 10 1 HET MG A 767 1 HET NCO A 766 3 HETNAM C38 5-IODO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM NCO COBALT HEXAMMINE(III) FORMUL 1 C38 C9 H13 I N3 O7 P FORMUL 2 CL CL 1- FORMUL 3 MG MG 2+ FORMUL 4 NCO CO H18 N6 3+ FORMUL 5 HOH *54(H2 O) LINK O3' DG A 1 P C38 A 2 1555 1555 1.61 LINK O3' C38 A 2 P DG A 3 1555 1555 1.61 LINK MG MG A 767 O HOH A 768 1555 1555 2.07 LINK MG MG A 767 O HOH A 769 1555 1555 2.06 LINK MG MG A 767 O HOH A 770 1555 1555 2.06 LINK MG MG A 767 O HOH A 771 1555 1555 2.06 LINK MG MG A 767 O HOH A 772 1555 1555 2.07 LINK MG MG A 767 O HOH A 773 1555 1555 2.06 SITE 1 AC1 1 DA A 4 SITE 1 AC2 6 HOH A 768 HOH A 769 HOH A 770 HOH A 771 SITE 2 AC2 6 HOH A 772 HOH A 773 SITE 1 AC3 2 DG A 3 HOH A 779 CRYST1 36.736 36.736 64.754 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027221 0.015716 0.000000 0.00000 SCALE2 0.000000 0.031432 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015443 0.00000 ATOM 1 O5' DG A 1 1.905 17.999 30.948 1.00 31.92 O ATOM 2 C5' DG A 1 0.827 17.289 30.346 1.00 24.99 C ATOM 3 C4' DG A 1 0.201 16.294 31.295 1.00 22.57 C ATOM 4 O4' DG A 1 1.175 15.304 31.695 1.00 21.15 O ATOM 5 C3' DG A 1 -0.326 16.891 32.599 1.00 20.60 C ATOM 6 O3' DG A 1 -1.475 16.145 32.979 1.00 21.72 O ATOM 7 C2' DG A 1 0.828 16.707 33.576 1.00 19.38 C ATOM 8 C1' DG A 1 1.525 15.449 33.063 1.00 19.98 C ATOM 9 N9 DG A 1 2.981 15.501 33.149 1.00 20.03 N ATOM 10 C8 DG A 1 3.780 16.599 32.994 1.00 18.57 C ATOM 11 N7 DG A 1 5.045 16.345 33.160 1.00 20.55 N ATOM 12 C5 DG A 1 5.087 14.987 33.439 1.00 18.62 C ATOM 13 C6 DG A 1 6.184 14.150 33.728 1.00 19.76 C ATOM 14 O6 DG A 1 7.381 14.456 33.823 1.00 19.85 O ATOM 15 N1 DG A 1 5.785 12.835 33.926 1.00 16.72 N ATOM 16 C2 DG A 1 4.482 12.381 33.860 1.00 18.13 C ATOM 17 N2 DG A 1 4.285 11.062 34.045 1.00 23.01 N ATOM 18 N3 DG A 1 3.440 13.167 33.616 1.00 19.51 N ATOM 19 C4 DG A 1 3.818 14.445 33.416 1.00 18.91 C HETATM 20 P C38 A 2 -2.283 16.517 34.319 1.00 23.38 P HETATM 21 O1P C38 A 2 -1.936 17.886 34.810 1.00 21.79 O HETATM 22 O2P C38 A 2 -3.694 16.177 34.050 1.00 23.75 O HETATM 23 O5' C38 A 2 -1.727 15.474 35.378 1.00 20.42 O HETATM 24 C5' C38 A 2 -1.811 14.078 35.107 1.00 21.10 C HETATM 25 C4' C38 A 2 -0.993 13.317 36.118 1.00 21.25 C HETATM 26 O4' C38 A 2 0.410 13.602 35.919 1.00 19.29 O HETATM 27 C3' C38 A 2 -1.307 13.736 37.557 1.00 21.42 C HETATM 28 O3' C38 A 2 -1.696 12.570 38.284 1.00 23.51 O HETATM 29 C2' C38 A 2 -0.002 14.342 38.063 1.00 19.62 C HETATM 30 C1' C38 A 2 1.019 13.658 37.177 1.00 17.38 C HETATM 31 N1 C38 A 2 2.302 14.350 37.013 1.00 16.61 N HETATM 32 C2 C38 A 2 3.473 13.582 37.055 1.00 16.90 C HETATM 33 O2 C38 A 2 3.367 12.345 37.212 1.00 19.34 O HETATM 34 N3 C38 A 2 4.675 14.184 36.921 1.00 16.70 N HETATM 35 C4 C38 A 2 4.748 15.504 36.723 1.00 14.23 C HETATM 36 N4 C38 A 2 5.952 16.046 36.620 1.00 16.16 N HETATM 37 C5 C38 A 2 3.564 16.321 36.641 1.00 12.94 C HETATM 38 C6 C38 A 2 2.373 15.707 36.809 1.00 13.55 C HETATM 39 I C38 A 2 3.652 18.357 36.148 1.00 17.30 I ATOM 40 P DG A 3 -2.246 12.710 39.789 1.00 26.57 P ATOM 41 OP1 DG A 3 -3.094 11.523 40.042 1.00 28.22 O ATOM 42 OP2 DG A 3 -2.798 14.073 40.002 1.00 27.30 O ATOM 43 O5' DG A 3 -0.952 12.564 40.688 1.00 22.34 O ATOM 44 C5' DG A 3 -0.050 11.489 40.475 1.00 23.00 C ATOM 45 C4' DG A 3 1.274 11.814 41.119 1.00 21.36 C ATOM 46 O4' DG A 3 1.846 12.995 40.503 1.00 19.47 O ATOM 47 C3' DG A 3 1.170 12.141 42.609 1.00 22.19 C ATOM 48 O3' DG A 3 2.385 11.732 43.220 1.00 24.49 O ATOM 49 C2' DG A 3 1.134 13.655 42.606 1.00 18.94 C ATOM 50 C1' DG A 3 2.179 13.896 41.539 1.00 18.68 C ATOM 51 N9 DG A 3 2.187 15.254 41.017 1.00 16.63 N ATOM 52 C8 DG A 3 1.134 16.141 40.957 1.00 17.30 C ATOM 53 N7 DG A 3 1.497 17.336 40.589 1.00 16.51 N ATOM 54 C5 DG A 3 2.863 17.220 40.346 1.00 14.83 C ATOM 55 C6 DG A 3 3.832 18.198 39.967 1.00 16.63 C ATOM 56 O6 DG A 3 3.669 19.407 39.764 1.00 16.73 O ATOM 57 N1 DG A 3 5.109 17.645 39.857 1.00 16.26 N ATOM 58 C2 DG A 3 5.414 16.324 40.100 1.00 17.09 C ATOM 59 N2 DG A 3 6.709 15.968 39.953 1.00 18.43 N ATOM 60 N3 DG A 3 4.530 15.414 40.464 1.00 16.20 N ATOM 61 C4 DG A 3 3.287 15.926 40.574 1.00 15.64 C ATOM 62 P DA A 4 2.409 11.294 44.758 1.00 27.49 P ATOM 63 OP1 DA A 4 2.145 9.830 44.782 1.00 29.71 O ATOM 64 OP2 DA A 4 1.562 12.206 45.563 1.00 28.50 O ATOM 65 O5' DA A 4 3.923 11.553 45.143 1.00 25.64 O ATOM 66 C5' DA A 4 4.976 10.955 44.382 1.00 25.15 C ATOM 67 C4' DA A 4 6.106 11.939 44.195 1.00 24.81 C ATOM 68 O4' DA A 4 5.686 13.010 43.321 1.00 22.61 O ATOM 69 C3' DA A 4 6.531 12.627 45.482 1.00 25.95 C ATOM 70 O3'A DA A 4 7.556 11.820 46.065 0.50 27.34 O ATOM 71 O3'B DA A 4 7.534 11.892 46.193 0.50 27.45 O ATOM 72 C2' DA A 4 7.097 13.943 44.991 1.00 24.67 C ATOM 73 C1' DA A 4 6.335 14.217 43.694 1.00 22.26 C ATOM 74 N9 DA A 4 5.314 15.267 43.786 1.00 21.82 N ATOM 75 C8 DA A 4 4.004 15.113 44.153 1.00 21.68 C ATOM 76 N7 DA A 4 3.308 16.223 44.105 1.00 22.23 N ATOM 77 C5 DA A 4 4.224 17.175 43.691 1.00 22.07 C ATOM 78 C6 DA A 4 4.111 18.568 43.447 1.00 21.35 C ATOM 79 N6 DA A 4 2.979 19.260 43.595 1.00 24.84 N ATOM 80 N1 DA A 4 5.220 19.223 43.046 1.00 22.51 N ATOM 81 C2 DA A 4 6.355 18.529 42.900 1.00 23.83 C ATOM 82 N3 DA A 4 6.584 17.227 43.100 1.00 21.50 N ATOM 83 C4 DA A 4 5.468 16.603 43.497 1.00 21.08 C ATOM 84 P A DA A 5 7.350 11.216 47.533 0.50 28.62 P ATOM 85 P B DA A 5 7.449 11.766 47.800 0.50 28.07 P ATOM 86 OP1A DA A 5 8.576 10.450 47.875 0.50 29.00 O ATOM 87 OP1B DA A 5 8.674 11.067 48.264 0.50 29.88 O ATOM 88 OP2A DA A 5 6.028 10.539 47.563 0.50 28.53 O ATOM 89 OP2B DA A 5 6.111 11.199 48.118 0.50 29.21 O ATOM 90 O5'A DA A 5 7.266 12.527 48.429 0.50 27.52 O ATOM 91 O5'B DA A 5 7.513 13.256 48.358 0.50 28.73 O ATOM 92 C5'A DA A 5 7.864 12.593 49.720 0.50 28.00 C ATOM 93 C5'B DA A 5 8.694 14.029 48.207 0.50 27.38 C ATOM 94 C4'A DA A 5 8.250 14.020 50.032 0.50 27.67 C ATOM 95 C4'B DA A 5 8.924 14.912 49.414 0.50 27.07 C ATOM 96 O4'A DA A 5 7.165 14.909 49.682 0.50 27.25 O ATOM 97 O4'B DA A 5 7.870 15.895 49.546 0.50 25.49 O ATOM 98 C3'A DA A 5 8.563 14.287 51.506 0.50 27.83 C ATOM 99 C3'B DA A 5 9.029 14.227 50.777 0.50 26.92 C ATOM 100 O3'A DA A 5 9.852 14.898 51.650 0.50 28.20 O ATOM 101 O3'B DA A 5 9.938 14.967 51.600 0.50 27.56 O ATOM 102 C2'A DA A 5 7.455 15.225 51.960 0.50 27.52 C ATOM 103 C2'B DA A 5 7.635 14.403 51.340 0.50 25.73 C ATOM 104 C1'A DA A 5 7.069 15.917 50.670 0.50 27.46 C ATOM 105 C1'B DA A 5 7.299 15.797 50.845 0.50 26.11 C ATOM 106 N9 A DA A 5 5.706 16.447 50.640 0.50 25.86 N ATOM 107 N9 B DA A 5 5.869 16.058 50.724 0.50 24.92 N ATOM 108 C8 A DA A 5 4.533 15.749 50.786 0.50 25.58 C ATOM 109 C8 B DA A 5 4.839 15.155 50.811 0.50 24.41 C ATOM 110 N7 A DA A 5 3.460 16.494 50.690 0.50 25.99 N ATOM 111 N7 B DA A 5 3.655 15.689 50.666 0.50 24.38 N ATOM 112 C5 A DA A 5 3.959 17.770 50.473 0.50 25.32 C ATOM 113 C5 B DA A 5 3.921 17.036 50.474 0.50 23.60 C ATOM 114 C6 A DA A 5 3.327 19.011 50.283 0.50 25.53 C ATOM 115 C6 B DA A 5 3.082 18.141 50.265 0.50 23.45 C ATOM 116 N6 A DA A 5 2.004 19.170 50.272 0.50 26.01 N ATOM 117 N6 B DA A 5 1.749 18.056 50.201 0.50 24.20 N ATOM 118 N1 A DA A 5 4.112 20.094 50.096 0.50 25.02 N ATOM 119 N1 B DA A 5 3.665 19.353 50.119 0.50 23.65 N ATOM 120 C2 A DA A 5 5.440 19.927 50.098 0.50 24.85 C ATOM 121 C2 B DA A 5 5.004 19.430 50.169 0.50 23.47 C ATOM 122 N3 A DA A 5 6.150 18.810 50.263 0.50 24.53 N ATOM 123 N3 B DA A 5 5.897 18.461 50.353 0.50 22.43 N ATOM 124 C4 A DA A 5 5.341 17.756 50.446 0.50 25.34 C ATOM 125 C4 B DA A 5 5.282 17.276 50.505 0.50 23.28 C ATOM 126 P DA A 6 10.946 14.194 52.591 1.00 28.49 P ATOM 127 OP1 DA A 6 11.659 13.173 51.782 1.00 28.39 O ATOM 128 OP2 DA A 6 10.197 13.783 53.801 1.00 29.51 O ATOM 129 O5' DA A 6 11.958 15.345 53.009 1.00 27.02 O ATOM 130 C5' DA A 6 12.838 15.932 52.051 1.00 25.61 C ATOM 131 C4' DA A 6 13.986 16.627 52.747 1.00 25.01 C ATOM 132 O4' DA A 6 13.542 17.821 53.431 1.00 22.16 O ATOM 133 C3' DA A 6 14.737 15.810 53.799 1.00 25.14 C ATOM 134 O3' DA A 6 16.109 16.211 53.747 1.00 26.96 O ATOM 135 C2' DA A 6 14.087 16.268 55.094 1.00 23.13 C ATOM 136 C1' DA A 6 13.877 17.748 54.811 1.00 21.67 C ATOM 137 N9 DA A 6 12.779 18.385 55.528 1.00 19.72 N ATOM 138 C8 DA A 6 11.562 17.849 55.876 1.00 20.50 C ATOM 139 N7 DA A 6 10.732 18.721 56.386 1.00 17.42 N ATOM 140 C5 DA A 6 11.450 19.899 56.399 1.00 18.38 C ATOM 141 C6 DA A 6 11.122 21.200 56.787 1.00 18.95 C ATOM 142 N6 DA A 6 9.915 21.564 57.249 1.00 18.74 N ATOM 143 N1 DA A 6 12.080 22.145 56.675 1.00 21.20 N ATOM 144 C2 DA A 6 13.282 21.794 56.194 1.00 20.28 C ATOM 145 N3 DA A 6 13.705 20.615 55.781 1.00 21.81 N ATOM 146 C4 DA A 6 12.733 19.695 55.907 1.00 20.45 C ATOM 147 P DG A 7 17.201 15.510 54.700 1.00 26.59 P ATOM 148 OP1 DG A 7 18.499 15.607 53.960 1.00 28.29 O ATOM 149 OP2 DG A 7 16.699 14.187 55.134 1.00 23.75 O ATOM 150 O5' DG A 7 17.271 16.489 55.942 1.00 24.28 O ATOM 151 C5' DG A 7 17.551 17.869 55.759 1.00 25.10 C ATOM 152 C4' DG A 7 17.374 18.595 57.065 1.00 25.82 C ATOM 153 O4' DG A 7 15.964 18.652 57.377 1.00 24.71 O ATOM 154 C3' DG A 7 18.042 17.875 58.238 1.00 26.34 C ATOM 155 O3' DG A 7 18.775 18.818 59.003 1.00 29.49 O ATOM 156 C2' DG A 7 16.882 17.328 59.054 1.00 23.94 C ATOM 157 C1' DG A 7 15.792 18.333 58.744 1.00 22.63 C ATOM 158 N9 DG A 7 14.438 17.831 58.914 1.00 20.98 N ATOM 159 C8 DG A 7 14.007 16.534 58.784 1.00 18.16 C ATOM 160 N7 DG A 7 12.725 16.399 59.005 1.00 20.47 N ATOM 161 C5 DG A 7 12.289 17.680 59.292 1.00 18.45 C ATOM 162 C6 DG A 7 10.998 18.154 59.611 1.00 16.55 C ATOM 163 O6 DG A 7 9.948 17.501 59.700 1.00 17.49 O ATOM 164 N1 DG A 7 10.999 19.529 59.836 1.00 17.11 N ATOM 165 C2 DG A 7 12.103 20.357 59.740 1.00 15.64 C ATOM 166 N2 DG A 7 11.902 21.680 59.953 1.00 17.52 N ATOM 167 N3 DG A 7 13.319 19.914 59.440 1.00 17.39 N ATOM 168 C4 DG A 7 13.334 18.580 59.236 1.00 18.47 C ATOM 169 P DC A 8 19.871 18.298 60.052 1.00 33.13 P ATOM 170 OP1 DC A 8 20.871 19.380 60.216 1.00 34.22 O ATOM 171 OP2 DC A 8 20.311 16.950 59.622 1.00 31.81 O ATOM 172 O5' DC A 8 19.061 18.133 61.403 1.00 31.63 O ATOM 173 C5' DC A 8 19.122 19.129 62.414 1.00 31.37 C ATOM 174 C4' DC A 8 18.413 20.383 61.960 1.00 31.64 C ATOM 175 O4' DC A 8 17.090 20.064 61.452 1.00 27.91 O ATOM 176 C3' DC A 8 18.196 21.391 63.084 1.00 32.93 C ATOM 177 O3' DC A 8 18.198 22.715 62.540 1.00 37.73 O ATOM 178 C2' DC A 8 16.808 21.024 63.584 1.00 30.63 C ATOM 179 C1' DC A 8 16.098 20.628 62.297 1.00 26.77 C ATOM 180 N1 DC A 8 15.027 19.630 62.447 1.00 23.40 N ATOM 181 C2 DC A 8 13.727 20.068 62.718 1.00 21.17 C ATOM 182 O2 DC A 8 13.527 21.274 62.873 1.00 21.34 O ATOM 183 N3 DC A 8 12.734 19.159 62.805 1.00 19.68 N ATOM 184 C4 DC A 8 12.989 17.871 62.634 1.00 20.00 C ATOM 185 N4 DC A 8 11.965 17.021 62.696 1.00 20.00 N ATOM 186 C5 DC A 8 14.304 17.391 62.385 1.00 22.34 C ATOM 187 C6 DC A 8 15.284 18.299 62.304 1.00 20.58 C ATOM 188 P DT A 9 19.308 23.777 63.018 1.00 42.35 P ATOM 189 OP1 DT A 9 19.609 23.534 64.459 1.00 41.30 O ATOM 190 OP2 DT A 9 18.847 25.122 62.580 1.00 42.42 O TER 191 DT A 9 HETATM 192 CL CL A 10 0.000 21.211 43.890 0.33 31.72 CL HETATM 193 MG MG A 767 24.948 16.764 59.534 1.00 25.87 MG HETATM 194 CO NCO A 766 0.000 21.210 39.552 0.33 12.54 CO HETATM 195 N1 NCO A 766 1.686 21.411 40.532 1.00 15.55 N HETATM 196 N2 NCO A 766 0.524 22.668 38.352 1.00 15.19 N HETATM 197 O HOH A 768 23.789 17.504 57.986 1.00 32.62 O HETATM 198 O HOH A 769 23.593 17.486 60.904 1.00 33.39 O HETATM 199 O HOH A 770 25.983 18.539 59.617 1.00 33.69 O HETATM 200 O HOH A 771 26.096 16.015 61.073 1.00 32.52 O HETATM 201 O HOH A 772 26.325 16.026 58.174 1.00 32.36 O HETATM 202 O HOH A 773 23.920 14.982 59.448 1.00 32.12 O HETATM 203 O HOH A 774 8.912 15.432 64.755 0.50 34.09 O HETATM 204 O HOH A 775 18.369 10.606 64.807 0.33 23.12 O HETATM 205 O HOH A 776 18.368 16.293 48.566 0.50 36.87 O HETATM 206 O HOH A 777 0.000 21.211 48.567 0.17 25.02 O HETATM 207 O HOH A 778 1.746 21.590 50.620 0.33 34.09 O HETATM 208 O HOH A 779 -0.627 17.769 37.473 1.00 17.64 O HETATM 209 O HOH A 780 31.605 21.864 54.529 1.00 38.75 O HETATM 210 O HOH A 781 7.339 19.030 39.110 1.00 27.00 O HETATM 211 O HOH A 782 -5.922 16.340 36.318 1.00 32.09 O HETATM 212 O HOH A 783 8.732 15.630 55.315 1.00 37.14 O HETATM 213 O HOH A 784 16.084 20.961 54.387 1.00 32.82 O HETATM 214 O HOH A 785 21.092 13.516 62.734 1.00 35.42 O HETATM 215 O HOH A 786 12.486 14.306 62.252 1.00 29.21 O HETATM 216 O HOH A 787 15.462 21.922 58.753 1.00 30.32 O HETATM 217 O HOH A 788 15.068 13.877 60.874 1.00 39.05 O HETATM 218 O HOH A 789 15.234 22.540 71.797 1.00 30.39 O HETATM 219 O HOH A 790 3.647 22.343 52.685 1.00 36.67 O HETATM 220 O HOH A 791 21.251 18.120 54.833 1.00 41.27 O HETATM 221 O HOH A 792 20.751 20.515 65.124 1.00 44.08 O HETATM 222 O HOH A 793 11.644 13.414 65.010 1.00 30.84 O HETATM 223 O HOH A 794 20.859 11.876 64.999 1.00 30.10 O HETATM 224 O HOH A 795 17.144 20.749 67.070 1.00 35.07 O HETATM 225 O HOH A 796 -3.625 13.851 31.982 1.00 31.69 O HETATM 226 O HOH A 797 8.295 19.416 49.543 1.00 29.22 O HETATM 227 O HOH A 798 18.757 14.290 59.666 1.00 36.05 O HETATM 228 O HOH A 799 -2.638 10.142 42.793 1.00 36.29 O HETATM 229 O HOH A 800 26.438 20.410 53.075 1.00 38.91 O HETATM 230 O HOH A 801 13.899 24.856 54.553 1.00 40.39 O HETATM 231 O HOH A 802 18.802 11.827 67.654 1.00 44.89 O HETATM 232 O HOH A 803 11.346 13.068 49.038 1.00 34.45 O HETATM 233 O HOH A 804 15.580 23.511 67.342 1.00 37.39 O HETATM 234 O HOH A 805 11.521 10.482 51.396 1.00 46.00 O HETATM 235 O HOH A 806 15.187 22.878 52.762 1.00 39.54 O HETATM 236 O HOH A 807 5.082 21.635 39.342 1.00 31.29 O HETATM 237 O HOH A 808 24.421 15.230 56.118 1.00 33.67 O HETATM 238 O HOH A 809 16.928 21.807 69.384 1.00 32.62 O HETATM 239 O HOH A 810 11.173 10.488 47.640 1.00 40.19 O HETATM 240 O HOH A 811 18.245 17.746 51.317 1.00 37.90 O HETATM 241 O HOH A 812 28.980 22.640 53.151 1.00 40.22 O HETATM 242 O HOH A 813 21.230 15.792 55.589 1.00 39.52 O HETATM 243 O HOH A 814 7.801 22.312 49.080 1.00 38.10 O HETATM 244 O HOH A 815 16.719 24.356 72.992 1.00 37.04 O HETATM 245 O HOH A 816 27.669 19.739 55.911 1.00 41.78 O HETATM 246 O HOH A 817 24.029 18.334 54.489 1.00 38.97 O HETATM 247 O HOH A 818 20.990 20.451 57.843 1.00 40.91 O HETATM 248 O HOH A 819 -4.181 14.917 36.780 1.00 35.69 O HETATM 249 O HOH A 820 19.582 22.100 66.687 1.00 41.80 O HETATM 250 O HOH A 821 26.085 25.455 49.291 1.00 33.67 O CONECT 6 20 CONECT 20 6 21 22 23 CONECT 21 20 CONECT 22 20 CONECT 23 20 24 CONECT 24 23 25 CONECT 25 24 26 27 CONECT 26 25 30 CONECT 27 25 28 29 CONECT 28 27 40 CONECT 29 27 30 CONECT 30 26 29 31 CONECT 31 30 32 38 CONECT 32 31 33 34 CONECT 33 32 CONECT 34 32 35 CONECT 35 34 36 37 CONECT 36 35 CONECT 37 35 38 39 CONECT 38 31 37 CONECT 39 37 CONECT 40 28 CONECT 193 197 198 199 200 CONECT 193 201 202 CONECT 194 195 196 CONECT 195 194 CONECT 196 194 CONECT 197 193 CONECT 198 193 CONECT 199 193 CONECT 200 193 CONECT 201 193 CONECT 202 193 MASTER 326 0 4 0 0 0 4 6 227 1 33 1 END