HEADER DNA 28-APR-94 274D TITLE CRYSTAL STRUCTURE OF A COVALENT DNA-DRUG ADDUCT: ANTHRAMYCIN BOUND TO TITLE 2 C-C-A-A-C-G-T-T-G-G, AND A MOLECULAR EXPLANATION OF SPECIFICITY COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*CP*AP*AP*CP*GP*TP*TP*(DRUG)GP*G)-3'); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS B-DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, MODIFIED, DNA EXPDTA X-RAY DIFFRACTION AUTHOR M.L.KOPKA,D.S.GOODSELL,I.BAIKALOV,K.GRZESKOWIAK,D.CASCIO, AUTHOR 2 R.E.DICKERSON REVDAT 4 14-FEB-24 274D 1 REMARK LINK REVDAT 3 24-FEB-09 274D 1 VERSN REVDAT 2 01-APR-03 274D 1 JRNL REVDAT 1 21-OCT-94 274D 0 JRNL AUTH M.L.KOPKA,D.S.GOODSELL,I.BAIKALOV,K.GRZESKOWIAK,D.CASCIO, JRNL AUTH 2 R.E.DICKERSON JRNL TITL CRYSTAL STRUCTURE OF A COVALENT DNA-DRUG ADDUCT: ANTHRAMYCIN JRNL TITL 2 BOUND TO C-C-A-A-C-G-T-T-G-G AND A MOLECULAR EXPLANATION OF JRNL TITL 3 SPECIFICITY. JRNL REF BIOCHEMISTRY V. 33 13593 1994 JRNL REFN ISSN 0006-2960 JRNL PMID 7947769 JRNL DOI 10.1021/BI00250A011 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NUCLSQ REMARK 3 AUTHORS : WESTHOF,DUMAS,MORAS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 3 NUMBER OF REFLECTIONS : 1212 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 202 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 22 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 SUGAR-BASE BOND DISTANCE (A) : 0.030 ; 0.030 REMARK 3 SUGAR-BASE BOND ANGLE DISTANCE (A) : 0.058 ; 0.040 REMARK 3 PHOSPHATE BONDS DISTANCE (A) : 0.032 ; 0.030 REMARK 3 PHOSPHATE BOND ANGLE, H-BOND (A) : 0.061 ; 0.040 REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.018 ; 0.020 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.207 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION CONTACT (A) : 0.088 ; 0.100 REMARK 3 MULTIPLE TORSION CONTACT (A) : 0.115 ; 0.100 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 SUGAR-BASE BONDS (A**2) : 5.102 ; 6.000 REMARK 3 SUGAR-BASE ANGLES (A**2) : 6.534 ; 6.000 REMARK 3 PHOSPHATE BONDS (A**2) : 6.213 ; 6.000 REMARK 3 PHOSPHATE BOND ANGLE, H-BOND (A**2) : 6.743 ; 6.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 274D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB. REMARK 100 THE DEPOSITION ID IS D_1000177686. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 1212 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277.00K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.26000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.63000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.63000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 59.26000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 29.63000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OP2 DC A 2 O HOH A 14 5555 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC A 1 O5' DC A 1 C5' 0.097 REMARK 500 DC A 1 C2' DC A 1 C1' -0.112 REMARK 500 DA A 3 C6 DA A 3 N1 0.062 REMARK 500 DA A 3 N7 DA A 3 C8 0.045 REMARK 500 DA A 4 O4' DA A 4 C1' 0.076 REMARK 500 DA A 4 C2 DA A 4 N3 0.106 REMARK 500 DC A 5 C2 DC A 5 N3 0.052 REMARK 500 DG A 6 O4' DG A 6 C1' 0.084 REMARK 500 DG A 6 O4' DG A 6 C4' -0.061 REMARK 500 DT A 7 C2' DT A 7 C1' 0.079 REMARK 500 DT A 7 C4 DT A 7 C5 -0.065 REMARK 500 DT A 7 C2 DT A 7 O2 0.067 REMARK 500 DT A 7 C4 DT A 7 O4 0.089 REMARK 500 DT A 8 O4' DT A 8 C1' 0.083 REMARK 500 DT A 8 C2 DT A 8 O2 0.056 REMARK 500 DT A 8 C4 DT A 8 O4 0.077 REMARK 500 DG A 9 P DG A 9 O5' 0.086 REMARK 500 DG A 9 C8 DG A 9 N9 -0.057 REMARK 500 DG A 10 O4' DG A 10 C1' 0.068 REMARK 500 DG A 10 C6 DG A 10 N1 -0.042 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC A 1 O5' - C5' - C4' ANGL. DEV. = -8.4 DEGREES REMARK 500 DC A 1 O4' - C4' - C3' ANGL. DEV. = -7.0 DEGREES REMARK 500 DC A 1 C1' - O4' - C4' ANGL. DEV. = -11.2 DEGREES REMARK 500 DC A 1 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DC A 1 C6 - N1 - C2 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC A 1 N3 - C4 - N4 ANGL. DEV. = 4.7 DEGREES REMARK 500 DC A 2 P - O5' - C5' ANGL. DEV. = -10.1 DEGREES REMARK 500 DC A 2 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC A 2 C3' - O3' - P ANGL. DEV. = -9.7 DEGREES REMARK 500 DA A 3 O5' - P - OP2 ANGL. DEV. = 14.5 DEGREES REMARK 500 DA A 3 O4' - C4' - C3' ANGL. DEV. = -3.0 DEGREES REMARK 500 DA A 3 O4' - C1' - C2' ANGL. DEV. = -6.5 DEGREES REMARK 500 DA A 3 O4' - C1' - N9 ANGL. DEV. = 5.5 DEGREES REMARK 500 DA A 3 N1 - C6 - N6 ANGL. DEV. = -4.2 DEGREES REMARK 500 DA A 3 C3' - O3' - P ANGL. DEV. = -13.3 DEGREES REMARK 500 DA A 4 OP1 - P - OP2 ANGL. DEV. = -9.7 DEGREES REMARK 500 DA A 4 O5' - P - OP1 ANGL. DEV. = 9.3 DEGREES REMARK 500 DA A 4 O4' - C4' - C3' ANGL. DEV. = -3.1 DEGREES REMARK 500 DA A 4 C1' - O4' - C4' ANGL. DEV. = 6.3 DEGREES REMARK 500 DA A 4 O4' - C1' - C2' ANGL. DEV. = -14.1 DEGREES REMARK 500 DA A 4 C6 - N1 - C2 ANGL. DEV. = 7.8 DEGREES REMARK 500 DA A 4 N1 - C2 - N3 ANGL. DEV. = -13.7 DEGREES REMARK 500 DA A 4 C2 - N3 - C4 ANGL. DEV. = 7.1 DEGREES REMARK 500 DA A 4 C4 - C5 - C6 ANGL. DEV. = 3.5 DEGREES REMARK 500 DA A 4 N1 - C6 - N6 ANGL. DEV. = -5.7 DEGREES REMARK 500 DA A 4 C5 - C6 - N6 ANGL. DEV. = 8.2 DEGREES REMARK 500 DC A 5 O4' - C4' - C3' ANGL. DEV. = -5.0 DEGREES REMARK 500 DC A 5 C4' - C3' - C2' ANGL. DEV. = -4.7 DEGREES REMARK 500 DC A 5 O4' - C1' - N1 ANGL. DEV. = 6.2 DEGREES REMARK 500 DC A 5 N1 - C2 - O2 ANGL. DEV. = 4.9 DEGREES REMARK 500 DC A 5 N3 - C2 - O2 ANGL. DEV. = -5.6 DEGREES REMARK 500 DC A 5 N3 - C4 - N4 ANGL. DEV. = -4.5 DEGREES REMARK 500 DG A 6 P - O5' - C5' ANGL. DEV. = -11.3 DEGREES REMARK 500 DG A 6 O4' - C1' - C2' ANGL. DEV. = -5.1 DEGREES REMARK 500 DG A 6 C6 - N1 - C2 ANGL. DEV. = -7.6 DEGREES REMARK 500 DG A 6 N1 - C2 - N3 ANGL. DEV. = 4.3 DEGREES REMARK 500 DG A 6 C5 - C6 - N1 ANGL. DEV. = 5.6 DEGREES REMARK 500 DG A 6 N1 - C2 - N2 ANGL. DEV. = -7.4 DEGREES REMARK 500 DG A 6 N1 - C6 - O6 ANGL. DEV. = -4.4 DEGREES REMARK 500 DT A 7 O4' - C4' - C3' ANGL. DEV. = -5.3 DEGREES REMARK 500 DT A 7 C5' - C4' - O4' ANGL. DEV. = 8.2 DEGREES REMARK 500 DT A 7 C4' - C3' - C2' ANGL. DEV. = -5.0 DEGREES REMARK 500 DT A 7 O4' - C1' - C2' ANGL. DEV. = -5.4 DEGREES REMARK 500 DT A 7 O4' - C1' - N1 ANGL. DEV. = 15.3 DEGREES REMARK 500 DT A 7 C6 - N1 - C2 ANGL. DEV. = -4.5 DEGREES REMARK 500 DT A 7 N1 - C2 - N3 ANGL. DEV. = 4.1 DEGREES REMARK 500 DT A 7 C2 - N3 - C4 ANGL. DEV. = -5.3 DEGREES REMARK 500 DT A 7 N1 - C2 - O2 ANGL. DEV. = 6.5 DEGREES REMARK 500 DT A 7 N3 - C2 - O2 ANGL. DEV. = -10.8 DEGREES REMARK 500 DT A 7 N3 - C4 - O4 ANGL. DEV. = -7.3 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 76 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANT A 11 DBREF 274D A 1 10 PDB 274D 274D 1 10 SEQRES 1 A 10 DC DC DA DA DC DG DT DT DG DG HET ANT A 11 22 HETNAM ANT ANTHRAMYCIN FORMUL 2 ANT C16 H17 N3 O4 FORMUL 3 HOH *22(H2 O) LINK N2 DG A 9 C11 ANT A 11 1555 1555 1.34 SITE 1 AC1 7 DC A 2 DA A 3 DA A 4 DT A 8 SITE 2 AC1 7 DG A 9 DG A 10 HOH A 32 CRYST1 23.950 23.950 88.890 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.041754 0.024106 0.000000 0.00000 SCALE2 0.000000 0.048213 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011250 0.00000 ATOM 1 O5' DC A 1 20.223 -14.664 3.298 1.00 46.19 O ATOM 2 C5' DC A 1 20.660 -14.525 1.831 1.00 28.58 C ATOM 3 C4' DC A 1 20.669 -13.071 1.680 1.00 23.56 C ATOM 4 O4' DC A 1 19.318 -12.627 1.804 1.00 29.49 O ATOM 5 C3' DC A 1 21.265 -12.229 2.827 1.00 22.29 C ATOM 6 O3' DC A 1 22.650 -12.378 2.791 1.00 36.47 O ATOM 7 C2' DC A 1 20.669 -10.860 2.578 1.00 23.43 C ATOM 8 C1' DC A 1 19.554 -11.165 1.778 1.00 27.15 C ATOM 9 N1 DC A 1 18.312 -10.416 1.867 1.00 18.78 N ATOM 10 C2 DC A 1 18.428 -9.078 1.680 1.00 26.65 C ATOM 11 O2 DC A 1 19.532 -8.498 1.662 1.00 32.49 O ATOM 12 N3 DC A 1 17.269 -8.353 1.609 1.00 30.62 N ATOM 13 C4 DC A 1 16.052 -8.958 1.653 1.00 26.28 C ATOM 14 N4 DC A 1 14.914 -8.280 1.636 1.00 18.83 N ATOM 15 C5 DC A 1 15.966 -10.377 1.751 1.00 26.93 C ATOM 16 C6 DC A 1 17.133 -11.053 1.849 1.00 23.01 C ATOM 17 P DC A 2 23.514 -11.532 3.902 1.00 44.70 P ATOM 18 OP1 DC A 2 24.919 -11.729 3.680 1.00 41.71 O ATOM 19 OP2 DC A 2 22.919 -11.883 5.280 1.00 51.30 O ATOM 20 O5' DC A 2 22.972 -10.086 3.609 1.00 36.59 O ATOM 21 C5' DC A 2 23.780 -9.093 4.267 1.00 28.93 C ATOM 22 C4' DC A 2 23.512 -7.778 3.662 1.00 15.49 C ATOM 23 O4' DC A 2 22.153 -7.627 3.360 1.00 28.69 O ATOM 24 C3' DC A 2 23.819 -6.768 4.738 1.00 20.68 C ATOM 25 O3' DC A 2 24.545 -5.714 4.178 1.00 22.69 O ATOM 26 C2' DC A 2 22.429 -6.430 5.245 1.00 26.25 C ATOM 27 C1' DC A 2 21.538 -6.571 4.080 1.00 22.64 C ATOM 28 N1 DC A 2 20.128 -6.886 4.364 1.00 26.63 N ATOM 29 C2 DC A 2 19.250 -5.843 4.204 1.00 26.11 C ATOM 30 O2 DC A 2 19.694 -4.700 3.796 1.00 28.53 O ATOM 31 N3 DC A 2 17.917 -6.032 4.498 1.00 20.80 N ATOM 32 C4 DC A 2 17.486 -7.259 4.853 1.00 20.46 C ATOM 33 N4 DC A 2 16.154 -7.396 5.093 1.00 23.51 N ATOM 34 C5 DC A 2 18.360 -8.321 5.049 1.00 23.54 C ATOM 35 C6 DC A 2 19.652 -8.099 4.782 1.00 28.79 C ATOM 36 P DA A 3 25.377 -4.920 5.351 1.00 30.82 P ATOM 37 OP1 DA A 3 26.496 -4.202 4.693 1.00 34.00 O ATOM 38 OP2 DA A 3 25.823 -5.903 6.302 1.00 29.60 O ATOM 39 O5' DA A 3 24.286 -3.794 5.636 1.00 27.70 O ATOM 40 C5' DA A 3 24.486 -2.468 5.173 1.00 22.31 C ATOM 41 C4' DA A 3 23.385 -1.585 5.645 1.00 14.22 C ATOM 42 O4' DA A 3 22.126 -2.246 5.769 1.00 19.39 O ATOM 43 C3' DA A 3 23.521 -0.962 6.969 1.00 21.92 C ATOM 44 O3' DA A 3 22.751 0.251 6.809 1.00 29.48 O ATOM 45 C2' DA A 3 22.758 -1.935 7.893 1.00 29.93 C ATOM 46 C1' DA A 3 21.524 -2.128 7.067 1.00 21.83 C ATOM 47 N9 DA A 3 20.759 -3.312 7.476 1.00 17.62 N ATOM 48 C8 DA A 3 21.110 -4.526 7.920 1.00 12.38 C ATOM 49 N7 DA A 3 20.055 -5.353 8.125 1.00 19.49 N ATOM 50 C5 DA A 3 18.948 -4.586 7.742 1.00 15.69 C ATOM 51 C6 DA A 3 17.585 -4.860 7.716 1.00 22.72 C ATOM 52 N6 DA A 3 16.958 -5.996 8.107 1.00 26.18 N ATOM 53 N1 DA A 3 16.716 -3.827 7.298 1.00 22.46 N ATOM 54 C2 DA A 3 17.290 -2.647 6.933 1.00 22.13 C ATOM 55 N3 DA A 3 18.592 -2.335 6.916 1.00 25.50 N ATOM 56 C4 DA A 3 19.366 -3.356 7.351 1.00 16.14 C ATOM 57 P DA A 4 23.796 1.475 6.951 1.00 39.92 P ATOM 58 OP1 DA A 4 24.588 1.147 5.760 1.00 43.84 O ATOM 59 OP2 DA A 4 24.605 1.188 8.205 1.00 41.88 O ATOM 60 O5' DA A 4 22.888 2.752 6.960 1.00 32.91 O ATOM 61 C5' DA A 4 22.194 3.265 5.840 1.00 36.20 C ATOM 62 C4' DA A 4 20.735 3.512 6.151 1.00 28.97 C ATOM 63 O4' DA A 4 20.153 2.354 6.711 1.00 36.81 O ATOM 64 C3' DA A 4 20.379 4.534 7.156 1.00 31.17 C ATOM 65 O3' DA A 4 19.216 5.208 6.711 1.00 39.18 O ATOM 66 C2' DA A 4 20.095 3.669 8.427 1.00 32.81 C ATOM 67 C1' DA A 4 19.226 2.562 7.867 1.00 23.64 C ATOM 68 N9 DA A 4 19.141 1.311 8.596 1.00 18.26 N ATOM 69 C8 DA A 4 20.226 0.568 9.005 1.00 19.30 C ATOM 70 N7 DA A 4 19.899 -0.562 9.600 1.00 24.32 N ATOM 71 C5 DA A 4 18.489 -0.564 9.591 1.00 17.51 C ATOM 72 C6 DA A 4 17.618 -1.502 10.089 1.00 19.97 C ATOM 73 N6 DA A 4 17.826 -2.705 10.720 1.00 26.15 N ATOM 74 N1 DA A 4 16.296 -1.249 9.849 1.00 21.14 N ATOM 75 C2 DA A 4 15.784 -0.139 9.271 1.00 21.26 C ATOM 76 N3 DA A 4 16.748 0.821 8.809 1.00 26.06 N ATOM 77 C4 DA A 4 18.028 0.529 8.960 1.00 19.88 C ATOM 78 P DC A 5 18.936 6.735 7.200 1.00 43.40 P ATOM 79 OP1 DC A 5 18.949 7.376 5.849 1.00 45.99 O ATOM 80 OP2 DC A 5 20.119 7.112 8.071 1.00 45.15 O ATOM 81 O5' DC A 5 17.491 6.795 7.867 1.00 32.35 O ATOM 82 C5' DC A 5 16.966 5.521 8.311 1.00 32.02 C ATOM 83 C4' DC A 5 15.697 5.708 9.005 1.00 33.25 C ATOM 84 O4' DC A 5 15.294 4.493 9.742 1.00 36.19 O ATOM 85 C3' DC A 5 15.552 6.735 10.116 1.00 36.23 C ATOM 86 O3' DC A 5 14.162 6.861 10.453 1.00 37.80 O ATOM 87 C2' DC A 5 16.355 5.982 11.191 1.00 34.12 C ATOM 88 C1' DC A 5 15.708 4.586 11.058 1.00 28.85 C ATOM 89 N1 DC A 5 16.565 3.474 11.511 1.00 28.43 N ATOM 90 C2 DC A 5 15.875 2.304 11.751 1.00 32.17 C ATOM 91 O2 DC A 5 14.618 2.172 11.573 1.00 38.07 O ATOM 92 N3 DC A 5 16.555 1.180 12.249 1.00 29.85 N ATOM 93 C4 DC A 5 17.895 1.278 12.436 1.00 26.24 C ATOM 94 N4 DC A 5 18.463 0.133 12.907 1.00 30.62 N ATOM 95 C5 DC A 5 18.609 2.452 12.178 1.00 22.92 C ATOM 96 C6 DC A 5 17.907 3.501 11.742 1.00 27.31 C ATOM 97 P DG A 6 13.704 8.259 11.025 1.00 47.49 P ATOM 98 OP1 DG A 6 13.114 8.643 9.772 1.00 44.13 O ATOM 99 OP2 DG A 6 14.874 8.996 11.594 1.00 36.79 O ATOM 100 O5' DG A 6 12.635 7.734 12.127 1.00 42.71 O ATOM 101 C5' DG A 6 11.648 6.863 11.478 1.00 45.50 C ATOM 102 C4' DG A 6 11.155 5.938 12.536 1.00 41.84 C ATOM 103 O4' DG A 6 12.119 5.048 12.981 1.00 51.05 O ATOM 104 C3' DG A 6 10.683 6.635 13.825 1.00 49.18 C ATOM 105 O3' DG A 6 9.531 5.868 14.252 1.00 48.23 O ATOM 106 C2' DG A 6 11.904 6.552 14.741 1.00 45.13 C ATOM 107 C1' DG A 6 12.290 5.113 14.474 1.00 41.38 C ATOM 108 N9 DG A 6 13.684 4.764 14.750 1.00 32.53 N ATOM 109 C8 DG A 6 14.786 5.565 14.510 1.00 28.60 C ATOM 110 N7 DG A 6 15.910 4.953 14.794 1.00 31.63 N ATOM 111 C5 DG A 6 15.522 3.684 15.247 1.00 27.26 C ATOM 112 C6 DG A 6 16.278 2.607 15.727 1.00 32.05 C ATOM 113 O6 DG A 6 17.534 2.543 15.843 1.00 35.88 O ATOM 114 N1 DG A 6 15.575 1.468 16.145 1.00 27.53 N ATOM 115 C2 DG A 6 14.204 1.487 16.021 1.00 27.97 C ATOM 116 N2 DG A 6 13.711 0.295 16.438 1.00 31.57 N ATOM 117 N3 DG A 6 13.430 2.479 15.585 1.00 34.59 N ATOM 118 C4 DG A 6 14.168 3.557 15.221 1.00 30.29 C ATOM 119 P DT A 7 8.627 6.376 15.461 1.00 54.18 P ATOM 120 OP1 DT A 7 7.430 7.075 14.892 1.00 42.44 O ATOM 121 OP2 DT A 7 9.517 7.291 16.305 1.00 48.92 O ATOM 122 O5' DT A 7 8.295 4.984 16.225 1.00 49.75 O ATOM 123 C5' DT A 7 9.077 3.800 16.163 1.00 45.73 C ATOM 124 C4' DT A 7 8.828 2.866 17.292 1.00 43.92 C ATOM 125 O4' DT A 7 9.968 2.223 17.905 1.00 40.40 O ATOM 126 C3' DT A 7 8.186 3.509 18.572 1.00 43.96 C ATOM 127 O3' DT A 7 7.520 2.443 19.230 1.00 49.61 O ATOM 128 C2' DT A 7 9.439 4.144 19.114 1.00 42.58 C ATOM 129 C1' DT A 7 10.564 3.024 18.927 1.00 37.24 C ATOM 130 N1 DT A 7 11.892 3.628 18.812 1.00 32.29 N ATOM 131 C2 DT A 7 12.959 2.900 19.327 1.00 32.61 C ATOM 132 O2 DT A 7 12.979 1.713 19.825 1.00 34.47 O ATOM 133 N3 DT A 7 14.231 3.439 19.247 1.00 31.66 N ATOM 134 C4 DT A 7 14.459 4.692 18.714 1.00 30.60 C ATOM 135 O4 DT A 7 15.739 5.001 18.678 1.00 33.46 O ATOM 136 C5 DT A 7 13.386 5.409 18.225 1.00 27.78 C ATOM 137 C7 DT A 7 13.611 6.762 17.621 1.00 35.36 C ATOM 138 C6 DT A 7 12.182 4.868 18.287 1.00 31.39 C ATOM 139 P DT A 8 6.734 2.313 20.581 1.00 56.87 P ATOM 140 OP1 DT A 8 5.552 1.373 20.465 1.00 54.78 O ATOM 141 OP2 DT A 8 6.298 3.698 21.061 1.00 51.07 O ATOM 142 O5' DT A 8 7.759 1.471 21.487 1.00 51.90 O ATOM 143 C5' DT A 8 8.417 0.313 20.892 1.00 48.00 C ATOM 144 C4' DT A 8 9.240 -0.377 21.914 1.00 50.13 C ATOM 145 O4' DT A 8 10.595 0.037 22.145 1.00 51.35 O ATOM 146 C3' DT A 8 8.671 -0.251 23.372 1.00 51.96 C ATOM 147 O3' DT A 8 9.118 -1.464 23.994 1.00 53.47 O ATOM 148 C2' DT A 8 9.233 1.137 23.754 1.00 47.16 C ATOM 149 C1' DT A 8 10.671 0.973 23.319 1.00 42.25 C ATOM 150 N1 DT A 8 11.482 2.153 22.990 1.00 35.86 N ATOM 151 C2 DT A 8 12.861 1.892 22.910 1.00 38.04 C ATOM 152 O2 DT A 8 13.281 0.711 23.150 1.00 37.94 O ATOM 153 N3 DT A 8 13.750 2.941 22.572 1.00 37.35 N ATOM 154 C4 DT A 8 13.237 4.181 22.314 1.00 37.57 C ATOM 155 O4 DT A 8 14.119 5.094 22.012 1.00 32.74 O ATOM 156 C5 DT A 8 11.811 4.420 22.376 1.00 33.68 C ATOM 157 C7 DT A 8 11.292 5.791 22.092 1.00 31.61 C ATOM 158 C6 DT A 8 11.037 3.408 22.714 1.00 32.31 C ATOM 159 P DG A 9 9.289 -1.529 25.630 1.00 53.46 P ATOM 160 OP1 DG A 9 9.628 -2.904 25.932 1.00 46.73 O ATOM 161 OP2 DG A 9 8.179 -0.680 26.154 1.00 49.54 O ATOM 162 O5' DG A 9 10.700 -0.624 25.719 1.00 58.18 O ATOM 163 C5' DG A 9 11.713 -1.350 24.963 1.00 54.77 C ATOM 164 C4' DG A 9 12.502 -2.091 25.994 1.00 49.88 C ATOM 165 O4' DG A 9 13.628 -1.191 26.119 1.00 46.48 O ATOM 166 C3' DG A 9 12.098 -2.304 27.434 1.00 45.29 C ATOM 167 O3' DG A 9 13.076 -3.122 28.030 1.00 48.11 O ATOM 168 C2' DG A 9 12.143 -0.863 27.959 1.00 40.31 C ATOM 169 C1' DG A 9 13.394 -0.425 27.265 1.00 35.58 C ATOM 170 N9 DG A 9 13.285 0.962 26.785 1.00 29.39 N ATOM 171 C8 DG A 9 12.249 1.753 26.599 1.00 27.62 C ATOM 172 N7 DG A 9 12.574 2.958 26.243 1.00 36.11 N ATOM 173 C5 DG A 9 13.974 2.947 26.199 1.00 31.04 C ATOM 174 C6 DG A 9 14.889 3.964 25.870 1.00 34.01 C ATOM 175 O6 DG A 9 14.704 5.142 25.487 1.00 42.59 O ATOM 176 N1 DG A 9 16.221 3.588 25.914 1.00 33.65 N ATOM 177 C2 DG A 9 16.571 2.294 26.279 1.00 27.36 C ATOM 178 N2 DG A 9 17.886 2.257 26.216 1.00 26.32 N ATOM 179 N3 DG A 9 15.757 1.340 26.581 1.00 29.59 N ATOM 180 C4 DG A 9 14.448 1.711 26.519 1.00 31.30 C ATOM 181 P DG A 10 13.741 -3.275 29.461 1.00 56.44 P ATOM 182 OP1 DG A 10 14.479 -4.602 29.363 1.00 49.58 O ATOM 183 OP2 DG A 10 12.697 -3.287 30.572 1.00 48.34 O ATOM 184 O5' DG A 10 14.794 -2.020 29.505 1.00 48.16 O ATOM 185 C5' DG A 10 16.232 -2.470 29.470 1.00 35.92 C ATOM 186 C4' DG A 10 17.195 -1.371 29.763 1.00 24.13 C ATOM 187 O4' DG A 10 16.699 -0.135 29.354 1.00 27.18 O ATOM 188 C3' DG A 10 17.554 -1.122 31.230 1.00 27.41 C ATOM 189 O3' DG A 10 18.929 -0.848 31.381 1.00 37.64 O ATOM 190 C2' DG A 10 16.631 0.087 31.514 1.00 24.85 C ATOM 191 C1' DG A 10 17.012 0.917 30.359 1.00 22.81 C ATOM 192 N9 DG A 10 16.145 2.008 29.994 1.00 18.91 N ATOM 193 C8 DG A 10 14.772 1.892 29.870 1.00 25.83 C ATOM 194 N7 DG A 10 14.156 2.976 29.461 1.00 26.02 N ATOM 195 C5 DG A 10 15.236 3.856 29.265 1.00 23.00 C ATOM 196 C6 DG A 10 15.253 5.216 28.821 1.00 25.72 C ATOM 197 O6 DG A 10 14.194 5.785 28.554 1.00 29.96 O ATOM 198 N1 DG A 10 16.466 5.803 28.759 1.00 20.19 N ATOM 199 C2 DG A 10 17.606 5.086 29.087 1.00 24.47 C ATOM 200 N2 DG A 10 18.776 5.822 28.999 1.00 25.76 N ATOM 201 N3 DG A 10 17.667 3.810 29.505 1.00 23.55 N ATOM 202 C4 DG A 10 16.448 3.263 29.567 1.00 24.17 C TER 203 DG A 10 HETATM 204 C1 ANT A 11 17.704 -0.286 24.981 1.00 27.98 C HETATM 205 C2 ANT A 11 17.699 -1.804 25.221 1.00 31.41 C HETATM 206 C3 ANT A 11 18.568 -2.132 26.199 1.00 31.78 C HETATM 207 N4 ANT A 11 19.348 -0.998 26.625 1.00 25.44 N HETATM 208 C5 ANT A 11 20.593 -1.222 27.132 1.00 19.68 C HETATM 209 O5 ANT A 11 20.785 -2.396 27.576 1.00 23.16 O HETATM 210 C5A ANT A 11 21.494 -0.064 27.390 1.00 23.26 C HETATM 211 C6 ANT A 11 22.885 -0.346 27.532 1.00 29.82 C HETATM 212 C7 ANT A 11 23.872 0.645 27.772 1.00 24.21 C HETATM 213 C8 ANT A 11 23.435 2.012 27.896 1.00 19.10 C HETATM 214 C8M ANT A 11 24.492 3.084 28.136 1.00 22.26 C HETATM 215 C9 ANT A 11 22.123 2.340 27.790 1.00 21.51 C HETATM 216 C9A ANT A 11 21.124 1.319 27.514 1.00 25.79 C HETATM 217 O9 ANT A 11 21.692 3.642 27.896 1.00 25.05 O HETATM 218 N10 ANT A 11 19.840 1.697 27.399 1.00 29.02 N HETATM 219 C11 ANT A 11 18.776 1.317 26.563 1.00 27.55 C HETATM 220 C4A ANT A 11 19.046 0.147 25.656 1.00 26.16 C HETATM 221 C12 ANT A 11 16.555 -2.727 24.927 1.00 34.66 C HETATM 222 C13 ANT A 11 15.447 -2.134 24.385 1.00 42.45 C HETATM 223 C14 ANT A 11 14.326 -2.914 23.807 1.00 45.63 C HETATM 224 O14 ANT A 11 14.116 -4.119 24.163 1.00 41.96 O HETATM 225 N15 ANT A 11 13.604 -2.103 22.972 1.00 42.83 N HETATM 226 O HOH A 12 19.694 5.870 14.187 1.00 49.64 O HETATM 227 O HOH A 13 27.147 1.340 8.776 1.00 39.47 O HETATM 228 O HOH A 14 21.629 12.038 22.880 1.00 44.80 O HETATM 229 O HOH A 15 17.158 11.009 22.774 1.00 48.62 O HETATM 230 O HOH A 16 7.124 4.802 23.840 1.00 51.10 O HETATM 231 O HOH A 17 4.537 -0.023 24.987 1.00 50.94 O HETATM 232 O HOH A 18 12.518 -5.945 32.246 1.00 34.79 O HETATM 233 O HOH A 19 26.207 -2.989 11.271 1.00 38.26 O HETATM 234 O HOH A 20 13.660 13.185 24.934 1.00 51.83 O HETATM 235 O HOH A 21 12.196 -3.941 34.291 1.00 59.00 O HETATM 236 O HOH A 22 11.074 -3.182 18.462 1.00 48.46 O HETATM 237 O HOH A 23 25.868 6.853 13.707 1.00 43.04 O HETATM 238 O HOH A 24 28.667 4.636 11.458 1.00 51.47 O HETATM 239 O HOH A 25 21.883 -2.941 12.062 1.00 45.25 O HETATM 240 O HOH A 26 12.524 -1.004 32.172 1.00 38.90 O HETATM 241 O HOH A 27 8.505 -2.883 17.280 1.00 57.68 O HETATM 242 O HOH A 28 10.387 -0.514 15.719 0.50 28.61 O HETATM 243 O HOH A 29 14.594 -6.507 27.414 1.00 51.68 O HETATM 244 O HOH A 30 15.328 9.234 20.116 1.00 60.06 O HETATM 245 O HOH A 31 24.334 -1.404 12.338 1.00 50.41 O HETATM 246 O HOH A 32 11.140 -3.192 21.671 1.00 56.85 O HETATM 247 O HOH A 33 9.731 -3.538 30.504 1.00 39.24 O CONECT 178 219 CONECT 204 205 220 CONECT 205 204 206 221 CONECT 206 205 207 CONECT 207 206 208 220 CONECT 208 207 209 210 CONECT 209 208 CONECT 210 208 211 216 CONECT 211 210 212 CONECT 212 211 213 CONECT 213 212 214 215 CONECT 214 213 CONECT 215 213 216 217 CONECT 216 210 215 218 CONECT 217 215 CONECT 218 216 219 CONECT 219 178 218 220 CONECT 220 204 207 219 CONECT 221 205 222 CONECT 222 221 223 CONECT 223 222 224 225 CONECT 224 223 CONECT 225 223 MASTER 329 0 1 0 0 0 2 6 246 1 23 1 END