HEADER PROTEIN FIBRIL 21-DEC-10 2Y3L TITLE STRUCTURE OF SEGMENT MVGGVVIA FROM THE AMYLOID-BETA PEPTIDE (AB, TITLE 2 RESIDUES 35-42), ALTERNATE POLYMORPH 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMYLOID BETA A4 PROTEIN; COMPND 3 CHAIN: A, B, C, G; COMPND 4 FRAGMENT: RESIDUES 706-713; COMPND 5 SYNONYM: AMYLOID BETA PEPTIDE, ABPP, APPI, APP, ALZHEIMER DISEASE COMPND 6 AMYLOID PROTEIN, CEREBRAL VASCULAR AMYLOID PEPTIDE, CVAP, PREA4, COMPND 7 PROTEASE NEXIN-II, PN-II; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606 KEYWDS PROTEIN FIBRIL, ALZHEIMER DISEASE EXPDTA X-RAY DIFFRACTION AUTHOR J.P.COLLETIER,A.LAGANOWSKY,M.R.SAWAYA,D.EISENBERG REVDAT 2 08-MAY-24 2Y3L 1 REMARK REVDAT 1 02-NOV-11 2Y3L 0 JRNL AUTH J.COLLETIER,A.LAGANOWSKY,M.LANDAU,M.ZHAO,A.B.SORIAGA, JRNL AUTH 2 L.GOLDSCHMIDT,D.FLOT,D.CASCIO,M.R.SAWAYA,D.EISENBERG JRNL TITL MOLECULAR BASIS FOR AMYLOID-{BETA} POLYMORPHISM. JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 16938 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 21949245 JRNL DOI 10.1073/PNAS.1112600108 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0085 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 88.9 REMARK 3 NUMBER OF REFLECTIONS : 896 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.600 REMARK 3 FREE R VALUE TEST SET COUNT : 53 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 65 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 3 REMARK 3 BIN FREE R VALUE : 0.2220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 204 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.26000 REMARK 3 B22 (A**2) : -0.58000 REMARK 3 B33 (A**2) : 0.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.10000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.717 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.262 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.151 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.990 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 200 ; 0.024 ; 0.023 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 268 ; 2.896 ; 2.030 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 28 ;11.591 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 32 ;16.039 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 40 ; 0.174 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 128 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES REFINED INDIVIDUALLY. REMARK 4 REMARK 4 2Y3L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1290046809. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 896 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 23.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.9 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.5400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.3 REMARK 200 DATA REDUNDANCY IN SHELL : 1.91 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.550 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 10.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AB3542 CRYSTALS (FIRST DISSOLVED IN REMARK 280 WATER) WERE FOUND IN 1.5-YEAR-OLD TRAYS SET AT 0.5 MG/ML IN 0.1 REMARK 280 M HEPES PH 7.5, 0.5 M MG FORMATE (CRYSTAL FORM II) REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 23.79500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N VAL A 2 O ILE C 7 1655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UOA RELATED DB: PDB REMARK 900 AFTER 3NS REMARK 900 RELATED ID: 1TAW RELATED DB: PDB REMARK 900 BOVINE TRYPSIN COMPLEXED TO APPI REMARK 900 RELATED ID: 2Y3J RELATED DB: PDB REMARK 900 STRUCTURE OF SEGMENT AIIGLM FROM THE AMYLOID-BETA PEPTIDE (AB, REMARK 900 RESIDUES 30-35) REMARK 900 RELATED ID: 1TKN RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF CAPPD*, AN INDEPENDENTLY FOLDEDEXTRACELLULAR REMARK 900 DOMAIN OF HUMAN AMYLOID-BETA PRECURSORPROTEIN REMARK 900 RELATED ID: 1QCM RELATED DB: PDB REMARK 900 AMYLOID BETA PEPTIDE (25-35), NMR, 20 STRUCTURES REMARK 900 RELATED ID: 1BA6 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE METHIONINE-OXIDIZED AMYLOID BETA-PEPTIDE REMARK 900 (1-40). DOES OXIDATION AFFECT CONFORMATIONAL SWITCHING? NMR, 10 REMARK 900 STRUCTURES REMARK 900 RELATED ID: 1QYT RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF FRAGMENT (25-35) OF BETA AMYLOIDPEPTIDE IN REMARK 900 SDS MICELLAR SOLUTION REMARK 900 RELATED ID: 1BJB RELATED DB: PDB REMARK 900 SOLUTION NMR STRUCTURE OF AMYLOID BETA[E16], RESIDUES 1-28, 14 REMARK 900 STRUCTURES REMARK 900 RELATED ID: 2Y2A RELATED DB: PDB REMARK 900 STRUCTURE OF SEGMENT KLVFFA FROM THE AMYLOID-BETA PEPTIDE (AB, REMARK 900 RESIDUES 16-21), ALTERNATE POLYMORPH I REMARK 900 RELATED ID: 2Y3K RELATED DB: PDB REMARK 900 STRUCTURE OF SEGMENT MVGGVVIA FROM THE AMYLOID-BETA PEPTIDE (AB, REMARK 900 RESIDUES 35-42), ALTERNATE POLYMORPH 1 REMARK 900 RELATED ID: 1CA0 RELATED DB: PDB REMARK 900 BOVINE CHYMOTRYPSIN COMPLEXED TO APPI REMARK 900 RELATED ID: 1UO8 RELATED DB: PDB REMARK 900 AFTER 2NS REMARK 900 RELATED ID: 1BRC RELATED DB: PDB REMARK 900 RELATED ID: 1BA4 RELATED DB: PDB REMARK 900 THE SOLUTION STRUCTURE OF AMYLOID BETA-PEPTIDE (1-40 ) IN A WATER- REMARK 900 MICELLE ENVIRONMENT. IS THE MEMBRANE- SPANNING DOMAIN WHERE WE REMARK 900 THINK IT IS? NMR, 10 STRUCTURES REMARK 900 RELATED ID: 1AAP RELATED DB: PDB REMARK 900 RELATED ID: 2WK3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN INSULIN-DEGRADING ENZYME IN COMPLEX WITH REMARK 900 AMYLOID-BETA (1-42) REMARK 900 RELATED ID: 1QWP RELATED DB: PDB REMARK 900 NMR ANALYSIS OF 25-35 FRAGMENT OF BETA AMYLOID PEPTIDE REMARK 900 RELATED ID: 1X11 RELATED DB: PDB REMARK 900 X11 PTB DOMAIN REMARK 900 RELATED ID: 1ZE9 RELATED DB: PDB REMARK 900 ZINC-BINDING DOMAIN OF ALZHEIMER'S DISEASE AMYLOID BETA-PEPTIDE REMARK 900 COMPLEXED WITH A ZINC (II) CATION REMARK 900 RELATED ID: 1QXC RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE FRAGMENT 25-35 OF BETA AMYLOID PEPTIDEIN 20/80 REMARK 900 V:V HEXAFLUOROISOPROPANOL/WATER MIXTURE REMARK 900 RELATED ID: 1IYT RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE ALZHEIMER'S DISEASE AMYLOID BETA-PEPTIDE REMARK 900 (1-42) REMARK 900 RELATED ID: 1ZE7 RELATED DB: PDB REMARK 900 ZINC-BINDING DOMAIN OF ALZHEIMER'S DISEASE AMYLOID BETA-PEPTIDE IN REMARK 900 WATER SOLUTION AT PH 6.5 REMARK 900 RELATED ID: 2BEG RELATED DB: PDB REMARK 900 3D STRUCTURE OF ALZHEIMER'S ABETA(1-42) FIBRILS REMARK 900 RELATED ID: 1UOI RELATED DB: PDB REMARK 900 AFTER 4NS REMARK 900 RELATED ID: 1AMB RELATED DB: PDB REMARK 900 ALZHEIMER'S DISEASE AMYLOID BETA-PEPTIDE (RESIDUES 1 - 28) (NMR, REMARK 900 MINIMIZED AVERAGE STRUCTURE) REMARK 900 RELATED ID: 1RW6 RELATED DB: PDB REMARK 900 HUMAN APP CORE DOMAIN REMARK 900 RELATED ID: 1UO7 RELATED DB: PDB REMARK 900 MOLECULAR DYNAMICS SIMULATION OF AMYLOID BETA 1-42 ( PDB: 1IYT) IN REMARK 900 WATER REMARK 900 RELATED ID: 1OWT RELATED DB: PDB REMARK 900 STRUCTURE OF THE ALZHEIMER'S DISEASE AMYLOID PRECURSORPROTEIN REMARK 900 COPPER BINDING DOMAIN REMARK 900 RELATED ID: 1AML RELATED DB: PDB REMARK 900 THE ALZHEIMER'S DISEASE AMYLOID A4 PEPTIDE (RESIDUES 1 -40) REMARK 900 RELATED ID: 1AMC RELATED DB: PDB REMARK 900 ALZHEIMER'S DISEASE AMYLOID BETA-PEPTIDE (RESIDUES 1 - 28) (NMR, 5 REMARK 900 STRUCTURES) REMARK 900 RELATED ID: 2BP4 RELATED DB: PDB REMARK 900 ZINC-BINDING DOMAIN OF ALZHEIMER'S DISEASE AMYLOID BETA-PEPTIDE IN REMARK 900 TFE-WATER (80-20) SOLUTION REMARK 900 RELATED ID: 1ZJD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF COAGULATIONFACTOR XI REMARK 900 IN COMPLEX WITH KUNITZ PROTEASE INHIBITOR DOMAINOF PROTEASE NEXIN II REMARK 900 RELATED ID: 2BOM RELATED DB: PDB REMARK 900 MODEL OF ALZHEIMER'S DISEASE AMYLOID-SS PEPTIDE BASED ON A RNA REMARK 900 BINDING PROTEIN REMARK 900 RELATED ID: 1BJC RELATED DB: PDB REMARK 900 SOLUTION NMR STRUCTURE OF AMYLOID BETA[F16], RESIDUES 1-28, 15 REMARK 900 STRUCTURES REMARK 900 RELATED ID: 1MWP RELATED DB: PDB REMARK 900 N-TERMINAL DOMAIN OF THE AMYLOID PRECURSOR PROTEIN REMARK 900 RELATED ID: 2Y29 RELATED DB: PDB REMARK 900 STRUCTURE OF SEGMENT KLVFFA FROM THE AMYLOID-BETA PEPTIDE (AB, REMARK 900 RESIDUES 16-21), ALTERNATE POLYMORPH III REMARK 900 RELATED ID: 1HZ3 RELATED DB: PDB REMARK 900 ALZHEIMER'S DISEASE AMYLOID-BETA PEPTIDE (RESIDUES 10- 35) REMARK 999 REMARK 999 SEQUENCE REMARK 999 AMYLOID BETA PEPTIDE (AB) IS A PROTEOLYTIC PRODUCT OF THE REMARK 999 AMYLOID PRECURSOR PROTEIN (APP). AB SEGMENT 35-MVGGVVIA-42 REMARK 999 CORRESPONDS TO RESIDUES 706-713 OF APP DBREF 2Y3L A 1 8 UNP P05067 A4_HUMAN 706 713 DBREF 2Y3L B 1 8 UNP P05067 A4_HUMAN 706 713 DBREF 2Y3L C 1 8 UNP P05067 A4_HUMAN 706 713 DBREF 2Y3L G 1 8 UNP P05067 A4_HUMAN 706 713 SEQRES 1 A 8 MET VAL GLY GLY VAL VAL ILE ALA SEQRES 1 B 8 MET VAL GLY GLY VAL VAL ILE ALA SEQRES 1 C 8 MET VAL GLY GLY VAL VAL ILE ALA SEQRES 1 G 8 MET VAL GLY GLY VAL VAL ILE ALA SHEET 1 AA 2 GLY A 3 ILE A 7 0 SHEET 2 AA 2 VAL C 2 VAL C 6 -1 O VAL C 2 N ILE A 7 SHEET 1 BA 2 VAL B 2 ILE B 7 0 SHEET 2 BA 2 VAL G 2 ILE G 7 -1 O VAL G 2 N ILE B 7 CISPEP 1 ILE C 7 ALA C 8 0 -5.23 CISPEP 2 ILE G 7 ALA G 8 0 -28.75 CRYST1 9.470 47.590 20.800 90.00 103.57 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.105597 0.000000 0.025488 0.00000 SCALE2 0.000000 0.021013 0.000000 0.00000 SCALE3 0.000000 0.000000 0.049458 0.00000 ATOM 1 N MET A 1 -0.163 13.830 7.209 1.00 18.36 N ATOM 2 CA MET A 1 0.339 13.074 8.409 1.00 17.78 C ATOM 3 C MET A 1 -0.471 11.851 8.533 1.00 16.42 C ATOM 4 O MET A 1 -1.650 11.851 8.230 1.00 15.74 O ATOM 5 CB MET A 1 0.203 13.850 9.716 1.00 19.56 C ATOM 6 CG MET A 1 0.660 13.024 10.937 1.00 20.45 C ATOM 7 SD MET A 1 -0.289 13.471 12.415 1.00 23.22 S ATOM 8 CE MET A 1 -0.270 15.283 12.311 1.00 22.05 C ATOM 9 N VAL A 2 0.185 10.811 9.007 1.00 15.39 N ATOM 10 CA VAL A 2 -0.347 9.492 8.995 1.00 14.55 C ATOM 11 C VAL A 2 0.351 8.951 10.220 1.00 13.97 C ATOM 12 O VAL A 2 1.584 8.970 10.283 1.00 13.53 O ATOM 13 CB VAL A 2 0.127 8.688 7.723 1.00 14.76 C ATOM 14 CG1 VAL A 2 -0.486 7.231 7.664 1.00 15.42 C ATOM 15 CG2 VAL A 2 -0.132 9.411 6.432 1.00 14.40 C ATOM 16 N GLY A 3 -0.424 8.472 11.193 1.00 13.07 N ATOM 17 CA GLY A 3 0.159 7.909 12.423 1.00 12.28 C ATOM 18 C GLY A 3 -0.498 6.622 12.891 1.00 11.72 C ATOM 19 O GLY A 3 -1.667 6.386 12.644 1.00 11.65 O ATOM 20 N GLY A 4 0.237 5.778 13.585 1.00 11.14 N ATOM 21 CA GLY A 4 -0.390 4.559 14.079 1.00 10.37 C ATOM 22 C GLY A 4 0.318 4.000 15.285 1.00 9.97 C ATOM 23 O GLY A 4 1.544 4.073 15.415 1.00 9.61 O ATOM 24 N VAL A 5 -0.461 3.404 16.165 1.00 9.59 N ATOM 25 CA VAL A 5 0.100 2.901 17.403 1.00 9.30 C ATOM 26 C VAL A 5 -0.538 1.584 17.732 1.00 8.97 C ATOM 27 O VAL A 5 -1.712 1.456 17.531 1.00 9.03 O ATOM 28 CB VAL A 5 -0.250 3.864 18.515 1.00 9.28 C ATOM 29 CG1 VAL A 5 0.362 5.208 18.224 1.00 9.37 C ATOM 30 CG2 VAL A 5 -1.783 4.047 18.580 1.00 9.24 C ATOM 31 N VAL A 6 0.219 0.632 18.255 1.00 9.09 N ATOM 32 CA VAL A 6 -0.330 -0.609 18.819 1.00 9.58 C ATOM 33 C VAL A 6 0.221 -0.830 20.202 1.00 10.06 C ATOM 34 O VAL A 6 1.384 -0.499 20.498 1.00 9.98 O ATOM 35 CB VAL A 6 0.072 -1.874 17.989 1.00 9.46 C ATOM 36 CG1 VAL A 6 1.476 -2.195 18.274 1.00 9.63 C ATOM 37 CG2 VAL A 6 -0.713 -3.098 18.367 1.00 9.30 C ATOM 38 N ILE A 7 -0.617 -1.424 21.054 1.00 10.76 N ATOM 39 CA ILE A 7 -0.204 -1.967 22.376 1.00 10.96 C ATOM 40 C ILE A 7 -0.715 -3.390 22.461 1.00 11.23 C ATOM 41 O ILE A 7 -1.859 -3.661 22.131 1.00 11.30 O ATOM 42 CB ILE A 7 -0.821 -1.206 23.559 1.00 10.91 C ATOM 43 CG1 ILE A 7 -0.501 0.281 23.505 1.00 10.86 C ATOM 44 CG2 ILE A 7 -0.312 -1.805 24.893 1.00 11.15 C ATOM 45 CD1 ILE A 7 -0.941 1.021 24.723 1.00 10.56 C ATOM 46 N ALA A 8 0.094 -4.308 22.900 1.00 11.71 N ATOM 47 CA ALA A 8 -0.374 -5.657 22.858 1.00 12.44 C ATOM 48 C ALA A 8 0.524 -6.600 23.568 1.00 13.14 C ATOM 49 O ALA A 8 0.120 -7.764 23.508 1.00 14.05 O ATOM 50 CB ALA A 8 -0.518 -6.109 21.418 1.00 12.58 C ATOM 51 OXT ALA A 8 1.603 -6.276 24.115 1.00 13.35 O TER 52 ALA A 8 ATOM 53 N MET B 1 2.111 14.117 -2.655 1.00 17.47 N ATOM 54 CA MET B 1 2.557 13.242 -1.505 1.00 16.99 C ATOM 55 C MET B 1 1.898 11.874 -1.618 1.00 15.61 C ATOM 56 O MET B 1 0.686 11.774 -1.830 1.00 14.96 O ATOM 57 CB MET B 1 2.222 13.924 -0.146 1.00 18.91 C ATOM 58 CG MET B 1 2.515 13.099 1.144 1.00 19.56 C ATOM 59 SD MET B 1 1.888 14.059 2.610 1.00 22.77 S ATOM 60 CE MET B 1 2.309 15.752 2.112 1.00 21.39 C ATOM 61 N VAL B 2 2.709 10.830 -1.506 1.00 14.21 N ATOM 62 CA VAL B 2 2.235 9.471 -1.403 1.00 13.12 C ATOM 63 C VAL B 2 2.935 8.988 -0.129 1.00 12.71 C ATOM 64 O VAL B 2 4.150 9.198 0.021 1.00 12.15 O ATOM 65 CB VAL B 2 2.682 8.551 -2.642 1.00 13.14 C ATOM 66 CG1 VAL B 2 2.077 7.129 -2.569 1.00 13.17 C ATOM 67 CG2 VAL B 2 2.361 9.149 -3.996 1.00 12.75 C ATOM 68 N GLY B 3 2.198 8.320 0.771 1.00 11.96 N ATOM 69 CA GLY B 3 2.783 7.853 2.044 1.00 11.28 C ATOM 70 C GLY B 3 2.005 6.725 2.713 1.00 10.91 C ATOM 71 O GLY B 3 0.799 6.632 2.543 1.00 10.23 O ATOM 72 N GLY B 4 2.679 5.877 3.488 1.00 10.67 N ATOM 73 CA GLY B 4 2.005 4.683 4.038 1.00 10.40 C ATOM 74 C GLY B 4 2.706 4.006 5.212 1.00 10.29 C ATOM 75 O GLY B 4 3.931 4.007 5.339 1.00 9.98 O ATOM 76 N VAL B 5 1.915 3.409 6.085 1.00 9.99 N ATOM 77 CA VAL B 5 2.451 2.937 7.348 1.00 9.89 C ATOM 78 C VAL B 5 1.836 1.608 7.693 1.00 9.71 C ATOM 79 O VAL B 5 0.677 1.378 7.384 1.00 9.72 O ATOM 80 CB VAL B 5 2.163 3.991 8.471 1.00 10.01 C ATOM 81 CG1 VAL B 5 2.715 5.393 8.053 1.00 9.90 C ATOM 82 CG2 VAL B 5 0.645 4.122 8.784 1.00 9.84 C ATOM 83 N VAL B 6 2.617 0.743 8.324 1.00 9.94 N ATOM 84 CA VAL B 6 2.170 -0.548 8.850 1.00 10.31 C ATOM 85 C VAL B 6 2.759 -0.860 10.224 1.00 10.78 C ATOM 86 O VAL B 6 3.957 -0.636 10.476 1.00 10.52 O ATOM 87 CB VAL B 6 2.572 -1.699 7.897 1.00 10.49 C ATOM 88 CG1 VAL B 6 4.059 -1.820 7.839 1.00 10.64 C ATOM 89 CG2 VAL B 6 2.019 -3.026 8.334 1.00 10.51 C ATOM 90 N ILE B 7 1.899 -1.384 11.114 1.00 11.34 N ATOM 91 CA ILE B 7 2.291 -2.030 12.400 1.00 11.31 C ATOM 92 C ILE B 7 1.730 -3.445 12.459 1.00 11.44 C ATOM 93 O ILE B 7 0.517 -3.657 12.452 1.00 11.51 O ATOM 94 CB ILE B 7 1.756 -1.300 13.629 1.00 11.25 C ATOM 95 CG1 ILE B 7 2.144 0.186 13.613 1.00 11.17 C ATOM 96 CG2 ILE B 7 2.270 -2.038 14.889 1.00 11.65 C ATOM 97 CD1 ILE B 7 1.572 1.003 14.732 1.00 10.60 C ATOM 98 N ALA B 8 2.589 -4.423 12.466 1.00 11.75 N ATOM 99 CA ALA B 8 2.102 -5.745 12.228 1.00 12.37 C ATOM 100 C ALA B 8 2.648 -6.747 13.218 1.00 13.08 C ATOM 101 O ALA B 8 1.895 -7.678 13.538 1.00 13.83 O ATOM 102 CB ALA B 8 2.433 -6.162 10.816 1.00 12.22 C ATOM 103 OXT ALA B 8 3.804 -6.675 13.687 1.00 13.32 O TER 104 ALA B 8 ATOM 105 N MET C 1 -5.412 -5.314 24.246 1.00 14.56 N ATOM 106 CA MET C 1 -4.676 -4.964 23.020 1.00 13.74 C ATOM 107 C MET C 1 -5.350 -3.717 22.489 1.00 12.56 C ATOM 108 O MET C 1 -6.570 -3.677 22.276 1.00 12.84 O ATOM 109 CB MET C 1 -4.782 -6.127 22.034 1.00 15.05 C ATOM 110 CG MET C 1 -4.340 -5.798 20.625 1.00 16.79 C ATOM 111 SD MET C 1 -5.676 -5.274 19.508 1.00 19.14 S ATOM 112 CE MET C 1 -4.584 -4.448 18.314 1.00 17.55 C ATOM 113 N VAL C 2 -4.577 -2.696 22.294 1.00 10.73 N ATOM 114 CA VAL C 2 -5.133 -1.437 21.933 1.00 10.01 C ATOM 115 C VAL C 2 -4.381 -0.886 20.673 1.00 9.47 C ATOM 116 O VAL C 2 -3.157 -0.809 20.661 1.00 9.13 O ATOM 117 CB VAL C 2 -4.966 -0.440 23.163 1.00 9.84 C ATOM 118 CG1 VAL C 2 -5.442 1.012 22.859 1.00 9.42 C ATOM 119 CG2 VAL C 2 -5.569 -0.998 24.415 1.00 9.92 C ATOM 120 N GLY C 3 -5.130 -0.509 19.635 1.00 9.28 N ATOM 121 CA GLY C 3 -4.577 0.073 18.426 1.00 9.14 C ATOM 122 C GLY C 3 -5.285 1.332 17.987 1.00 9.29 C ATOM 123 O GLY C 3 -6.497 1.479 18.161 1.00 9.23 O ATOM 124 N GLY C 4 -4.538 2.257 17.399 1.00 9.22 N ATOM 125 CA GLY C 4 -5.155 3.447 16.815 1.00 9.36 C ATOM 126 C GLY C 4 -4.433 3.904 15.560 1.00 9.48 C ATOM 127 O GLY C 4 -3.196 3.741 15.447 1.00 9.16 O ATOM 128 N VAL C 5 -5.192 4.485 14.628 1.00 9.77 N ATOM 129 CA VAL C 5 -4.608 4.966 13.339 1.00 9.96 C ATOM 130 C VAL C 5 -5.199 6.288 12.885 1.00 10.04 C ATOM 131 O VAL C 5 -6.366 6.516 13.080 1.00 9.79 O ATOM 132 CB VAL C 5 -4.777 3.854 12.218 1.00 9.91 C ATOM 133 CG1 VAL C 5 -6.190 3.402 12.098 1.00 9.88 C ATOM 134 CG2 VAL C 5 -4.248 4.297 10.827 1.00 10.17 C ATOM 135 N VAL C 6 -4.414 7.161 12.270 1.00 10.63 N ATOM 136 CA VAL C 6 -4.989 8.371 11.634 1.00 11.44 C ATOM 137 C VAL C 6 -4.336 8.953 10.361 1.00 12.07 C ATOM 138 O VAL C 6 -3.110 8.870 10.143 1.00 11.71 O ATOM 139 CB VAL C 6 -5.149 9.613 12.631 1.00 11.59 C ATOM 140 CG1 VAL C 6 -5.998 9.247 13.755 1.00 11.59 C ATOM 141 CG2 VAL C 6 -3.807 10.143 13.131 1.00 11.60 C ATOM 142 N ILE C 7 -5.202 9.575 9.549 1.00 12.93 N ATOM 143 CA ILE C 7 -4.833 10.590 8.554 1.00 13.91 C ATOM 144 C ILE C 7 -5.995 11.523 8.823 1.00 15.37 C ATOM 145 O ILE C 7 -7.117 11.027 8.791 1.00 16.57 O ATOM 146 CB ILE C 7 -4.983 10.034 7.117 1.00 13.66 C ATOM 147 CG1 ILE C 7 -4.584 8.553 7.058 1.00 13.14 C ATOM 148 CG2 ILE C 7 -4.214 10.920 6.091 1.00 13.58 C ATOM 149 CD1 ILE C 7 -5.054 7.762 5.856 1.00 13.31 C ATOM 150 N ALA C 8 -5.836 12.807 9.177 1.00 16.43 N ATOM 151 CA ALA C 8 -4.588 13.494 9.465 1.00 17.05 C ATOM 152 C ALA C 8 -4.832 14.375 10.668 1.00 17.77 C ATOM 153 O ALA C 8 -4.936 15.560 10.357 1.00 18.12 O ATOM 154 CB ALA C 8 -4.228 14.428 8.303 1.00 17.26 C ATOM 155 OXT ALA C 8 -4.945 14.028 11.862 1.00 17.28 O TER 156 ALA C 8 ATOM 157 N MET G 1 -2.257 -5.480 13.666 1.00 12.68 N ATOM 158 CA MET G 1 -2.116 -4.886 12.322 1.00 12.35 C ATOM 159 C MET G 1 -2.900 -3.602 12.273 1.00 11.21 C ATOM 160 O MET G 1 -4.129 -3.568 12.398 1.00 10.99 O ATOM 161 CB MET G 1 -2.548 -5.844 11.189 1.00 13.82 C ATOM 162 CG MET G 1 -2.114 -5.377 9.758 1.00 15.67 C ATOM 163 SD MET G 1 -3.256 -4.318 8.752 1.00 17.95 S ATOM 164 CE MET G 1 -2.037 -3.502 7.687 1.00 16.28 C ATOM 165 N VAL G 2 -2.156 -2.546 12.125 1.00 9.91 N ATOM 166 CA VAL G 2 -2.690 -1.281 11.749 1.00 9.14 C ATOM 167 C VAL G 2 -1.934 -0.844 10.447 1.00 8.63 C ATOM 168 O VAL G 2 -0.701 -1.009 10.321 1.00 8.05 O ATOM 169 CB VAL G 2 -2.469 -0.292 12.908 1.00 9.19 C ATOM 170 CG1 VAL G 2 -2.972 1.121 12.576 1.00 9.19 C ATOM 171 CG2 VAL G 2 -3.100 -0.816 14.170 1.00 9.25 C ATOM 172 N GLY G 3 -2.702 -0.338 9.472 1.00 8.17 N ATOM 173 CA GLY G 3 -2.186 0.255 8.255 1.00 7.66 C ATOM 174 C GLY G 3 -2.865 1.569 7.902 1.00 7.48 C ATOM 175 O GLY G 3 -3.991 1.865 8.332 1.00 7.13 O ATOM 176 N GLY G 4 -2.188 2.383 7.117 1.00 7.20 N ATOM 177 CA GLY G 4 -2.872 3.523 6.516 1.00 7.26 C ATOM 178 C GLY G 4 -2.118 3.990 5.311 1.00 7.32 C ATOM 179 O GLY G 4 -0.887 3.790 5.225 1.00 7.09 O ATOM 180 N VAL G 5 -2.827 4.629 4.388 1.00 7.47 N ATOM 181 CA VAL G 5 -2.155 5.204 3.220 1.00 7.62 C ATOM 182 C VAL G 5 -2.828 6.446 2.711 1.00 7.88 C ATOM 183 O VAL G 5 -4.047 6.496 2.633 1.00 7.66 O ATOM 184 CB VAL G 5 -2.113 4.160 2.055 1.00 7.62 C ATOM 185 CG1 VAL G 5 -3.431 3.534 1.878 1.00 7.53 C ATOM 186 CG2 VAL G 5 -1.564 4.806 0.665 1.00 7.88 C ATOM 187 N VAL G 6 -2.035 7.439 2.336 1.00 8.31 N ATOM 188 CA VAL G 6 -2.552 8.573 1.576 1.00 8.92 C ATOM 189 C VAL G 6 -1.928 8.965 0.208 1.00 9.49 C ATOM 190 O VAL G 6 -0.725 8.731 -0.070 1.00 9.15 O ATOM 191 CB VAL G 6 -2.701 9.871 2.462 1.00 8.95 C ATOM 192 CG1 VAL G 6 -4.047 9.873 3.053 1.00 8.98 C ATOM 193 CG2 VAL G 6 -1.663 9.936 3.550 1.00 8.80 C ATOM 194 N ILE G 7 -2.788 9.574 -0.633 1.00 10.15 N ATOM 195 CA ILE G 7 -2.374 10.474 -1.725 1.00 10.88 C ATOM 196 C ILE G 7 -3.295 11.667 -1.622 1.00 11.86 C ATOM 197 O ILE G 7 -4.509 11.448 -1.614 1.00 12.69 O ATOM 198 CB ILE G 7 -2.706 9.909 -3.122 1.00 10.70 C ATOM 199 CG1 ILE G 7 -2.207 8.469 -3.282 1.00 10.26 C ATOM 200 CG2 ILE G 7 -2.137 10.840 -4.204 1.00 10.45 C ATOM 201 CD1 ILE G 7 -3.059 7.614 -4.173 1.00 10.65 C ATOM 202 N ALA G 8 -2.839 12.904 -1.465 1.00 12.43 N ATOM 203 CA ALA G 8 -1.621 13.318 -0.824 1.00 13.44 C ATOM 204 C ALA G 8 -2.170 13.994 0.399 1.00 14.14 C ATOM 205 O ALA G 8 -2.957 14.894 0.149 1.00 14.13 O ATOM 206 CB ALA G 8 -0.905 14.424 -1.663 1.00 13.60 C ATOM 207 OXT ALA G 8 -1.845 13.754 1.560 1.00 14.67 O TER 208 ALA G 8 MASTER 353 0 0 0 4 0 0 6 204 4 0 4 END