HEADER DNA 17-APR-97 3REC TITLE ESCHERICHIA COLI RECA PROTEIN-BOUND DNA, NMR, 1 STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*TP*A)-3'); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: D(TA) REGION OF D(TACG) RECA PROTEIN-BOUND DNA SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS DEOXYRIBOSE-BASE STACKING, HOMOLOGOUS RECOMBINATION, HOMOLOGOUS KEYWDS 2 PAIRING, DEOXYRIBONUCLEIC ACID, DNA EXPDTA SOLUTION NMR AUTHOR T.NISHINAKA,Y.ITO,S.YOKOYAMA,T.SHIBATA REVDAT 4 22-MAY-24 3REC 1 REMARK REVDAT 3 16-MAR-22 3REC 1 REMARK REVDAT 2 24-FEB-09 3REC 1 VERSN REVDAT 1 22-OCT-97 3REC 0 JRNL AUTH T.NISHINAKA,Y.ITO,S.YOKOYAMA,T.SHIBATA JRNL TITL AN EXTENDED DNA STRUCTURE THROUGH DEOXYRIBOSE-BASE STACKING JRNL TITL 2 INDUCED BY RECA PROTEIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 94 6623 1997 JRNL REFN ISSN 0027-8424 JRNL PMID 9192615 JRNL DOI 10.1073/PNAS.94.13.6623 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 MATERIAL AND METHODS SECTION OF THE ABOVE REFERENCE. REMARK 4 REMARK 4 3REC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000179129. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7.1 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : TRANSFERRED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AMX600 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST OVERALL ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EW1 RELATED DB: PDB REMARK 900 ENSEMBLE OF 10 STRUCTURES DBREF 3REC A 1 2 PDB 3REC 3REC 1 2 SEQRES 1 A 2 DT DA CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ATOM 1 O5' DT A 1 6.823 -2.711 6.110 1.00 0.00 O ATOM 2 C5' DT A 1 7.938 -1.871 6.464 1.00 0.00 C ATOM 3 C4' DT A 1 7.452 -0.639 7.195 1.00 0.00 C ATOM 4 O4' DT A 1 6.144 -0.280 6.693 1.00 0.00 O ATOM 5 C3' DT A 1 7.285 -0.842 8.701 1.00 0.00 C ATOM 6 O3' DT A 1 7.586 0.381 9.390 1.00 0.00 O ATOM 7 C2' DT A 1 5.808 -1.150 8.845 1.00 0.00 C ATOM 8 C1' DT A 1 5.190 -0.306 7.745 1.00 0.00 C ATOM 9 N1 DT A 1 3.932 -0.849 7.204 1.00 0.00 N ATOM 10 C2 DT A 1 2.869 0.009 7.039 1.00 0.00 C ATOM 11 O2 DT A 1 2.921 1.195 7.319 1.00 0.00 O ATOM 12 N3 DT A 1 1.736 -0.576 6.530 1.00 0.00 N ATOM 13 C4 DT A 1 1.566 -1.902 6.178 1.00 0.00 C ATOM 14 O4 DT A 1 0.487 -2.283 5.733 1.00 0.00 O ATOM 15 C5 DT A 1 2.722 -2.745 6.378 1.00 0.00 C ATOM 16 C7 DT A 1 2.633 -4.196 6.026 1.00 0.00 C ATOM 17 C6 DT A 1 3.832 -2.184 6.874 1.00 0.00 C ATOM 18 H5' DT A 1 8.463 -1.568 5.558 1.00 0.00 H ATOM 19 H5'' DT A 1 8.618 -2.428 7.109 1.00 0.00 H ATOM 20 H4' DT A 1 8.147 0.184 7.027 1.00 0.00 H ATOM 21 H3' DT A 1 7.894 -1.674 9.053 1.00 0.00 H ATOM 22 H2' DT A 1 5.610 -2.209 8.687 1.00 0.00 H ATOM 23 H2'' DT A 1 5.438 -0.852 9.825 1.00 0.00 H ATOM 24 H1' DT A 1 5.026 0.704 8.121 1.00 0.00 H ATOM 25 H3 DT A 1 0.938 0.029 6.398 1.00 0.00 H ATOM 26 H71 DT A 1 2.823 -4.798 6.915 1.00 0.00 H ATOM 27 H72 DT A 1 3.375 -4.431 5.263 1.00 0.00 H ATOM 28 H73 DT A 1 1.636 -4.417 5.644 1.00 0.00 H ATOM 29 H6 DT A 1 4.705 -2.818 7.025 1.00 0.00 H ATOM 30 HO5' DT A 1 6.384 -2.961 6.926 1.00 0.00 H ATOM 31 P DA A 2 8.546 0.352 10.679 1.00 0.00 P ATOM 32 OP1 DA A 2 9.828 0.994 10.293 1.00 0.00 O ATOM 33 OP2 DA A 2 8.551 -1.028 11.226 1.00 0.00 O ATOM 34 O5' DA A 2 7.812 1.303 11.726 1.00 0.00 O ATOM 35 C5' DA A 2 7.627 2.704 11.451 1.00 0.00 C ATOM 36 C4' DA A 2 6.387 3.214 12.150 1.00 0.00 C ATOM 37 O4' DA A 2 5.272 2.358 11.811 1.00 0.00 O ATOM 38 C3' DA A 2 6.487 3.192 13.675 1.00 0.00 C ATOM 39 O3' DA A 2 5.773 4.296 14.240 1.00 0.00 O ATOM 40 C2' DA A 2 5.817 1.883 14.043 1.00 0.00 C ATOM 41 C1' DA A 2 4.738 1.759 12.983 1.00 0.00 C ATOM 42 N9 DA A 2 4.374 0.381 12.658 1.00 0.00 N ATOM 43 C8 DA A 2 5.194 -0.720 12.626 1.00 0.00 C ATOM 44 N7 DA A 2 4.577 -1.829 12.299 1.00 0.00 N ATOM 45 C5 DA A 2 3.261 -1.433 12.101 1.00 0.00 C ATOM 46 C6 DA A 2 2.116 -2.133 11.683 1.00 0.00 C ATOM 47 N6 DA A 2 2.098 -3.444 11.435 1.00 0.00 N ATOM 48 N1 DA A 2 0.973 -1.430 11.528 1.00 0.00 N ATOM 49 C2 DA A 2 0.991 -0.115 11.777 1.00 0.00 C ATOM 50 N3 DA A 2 2.002 0.654 12.174 1.00 0.00 N ATOM 51 C4 DA A 2 3.122 -0.074 12.319 1.00 0.00 C ATOM 52 H5' DA A 2 7.520 2.849 10.376 1.00 0.00 H ATOM 53 H5'' DA A 2 8.495 3.259 11.807 1.00 0.00 H ATOM 54 H4' DA A 2 6.177 4.233 11.826 1.00 0.00 H ATOM 55 H3' DA A 2 7.527 3.203 13.999 1.00 0.00 H ATOM 56 HO3' DA A 2 4.846 4.178 14.022 1.00 0.00 H ATOM 57 H2' DA A 2 6.520 1.052 13.988 1.00 0.00 H ATOM 58 H2'' DA A 2 5.384 1.930 15.042 1.00 0.00 H ATOM 59 H1' DA A 2 3.855 2.308 13.310 1.00 0.00 H ATOM 60 H8 DA A 2 6.258 -0.676 12.851 1.00 0.00 H ATOM 61 H61 DA A 2 1.243 -3.890 11.135 1.00 0.00 H ATOM 62 H62 DA A 2 2.940 -3.991 11.547 1.00 0.00 H ATOM 63 H2 DA A 2 0.044 0.398 11.635 1.00 0.00 H TER 64 DA A 2 MASTER 68 0 0 0 0 0 0 6 38 1 0 1 END