HEADER DNA 10-JUL-15 5CH0 TITLE CRYSTAL STRUCTURE OF AN A-FORM DNA DUPLEX CONTAINING 5- TITLE 2 HYDROXYLMETHYLCYTIDINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-R(*G)-D(P*(UMS))-R(P*G)-D(P*T)-R(P*A)-D(P*(5HC))- COMPND 3 R(P*AP*C)-3'); COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS A-FORM DNA DUPLEX, 5HMC, DNA EXPDTA X-RAY DIFFRACTION AUTHOR J.SHENG REVDAT 3 27-SEP-23 5CH0 1 REMARK REVDAT 2 20-JAN-21 5CH0 1 REMARK SEQRES REVDAT 1 20-JUL-16 5CH0 0 JRNL AUTH J.SHENG JRNL TITL CRYSTAL STRUCTURE OF AN A-FORM DNA DUPLEX CONTAINING JRNL TITL 2 5-HYDROXYLMETHYLCYTIDINE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 4496 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 215 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 308 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE SET COUNT : 14 REMARK 3 BIN FREE R VALUE : 0.1400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 164 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 37 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 7.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.15000 REMARK 3 B22 (A**2) : 0.15000 REMARK 3 B33 (A**2) : -0.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.063 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.061 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.036 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.869 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 183 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 280 ; 1.644 ; 3.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 32 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 83 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 60 ; 0.154 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 109 ; 0.271 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 12 ; 0.077 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 22 ; 0.180 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.079 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 262 ; 0.729 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 280 ; 1.200 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5CH0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211609. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : 99 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 4738 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 21.40 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 52.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.17400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.570 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1Z7I REMARK 200 REMARK 200 REMARK: TETRAGONAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% MPD, 40 MM NA CACODYLATE PH 7.0, REMARK 280 12 MM SPERMINE TETRA-HCL, 12MM KCL AND 80 MM NACL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 11.88200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 21.52500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 21.52500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.82300 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 21.52500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 21.52500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 5.94100 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 21.52500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 21.52500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 17.82300 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 21.52500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 21.52500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 5.94100 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 11.88200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 2920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 137 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG A 3 O5' - C5' - C4' ANGL. DEV. = -8.7 DEGREES REMARK 500 DG A 3 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DT A 4 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC A 8 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CJY RELATED DB: PDB DBREF 5CH0 A 1 8 PDB 5CH0 5CH0 1 8 SEQRES 1 A 8 DG UMS DG DT DA 5HC DA DC HET UMS A 2 21 HET 5HC A 6 21 HETNAM UMS 2'-METHYLSELENYL-2'-DEOXYURIDINE-5'-PHOSPHATE HETNAM 5HC 2'-DEOXY-5-(HYDROXYMETHYL)CYTIDINE 5'-(DIHYDROGEN HETNAM 2 5HC PHOSPHATE) FORMUL 1 UMS C10 H15 N2 O8 P SE FORMUL 1 5HC C10 H16 N3 O8 P FORMUL 2 HOH *37(H2 O) LINK O3' DG A 1 P UMS A 2 1555 1555 1.60 LINK O3' UMS A 2 P DG A 3 1555 1555 1.60 LINK O3' DA A 5 P 5HC A 6 1555 1555 1.60 LINK O3' 5HC A 6 P DA A 7 1555 1555 1.60 CRYST1 43.050 43.050 23.764 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023229 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023229 0.000000 0.00000 SCALE3 0.000000 0.000000 0.042080 0.00000 ATOM 1 O5' DG A 1 13.633 24.077 -5.463 1.00 7.50 O ATOM 2 C5' DG A 1 13.648 25.471 -5.215 1.00 6.70 C ATOM 3 C4' DG A 1 12.383 25.944 -4.513 1.00 5.35 C ATOM 4 O4' DG A 1 11.226 25.725 -5.357 1.00 4.89 O ATOM 5 C3' DG A 1 12.034 25.223 -3.220 1.00 4.81 C ATOM 6 O3' DG A 1 12.794 25.757 -2.142 1.00 5.84 O ATOM 7 C2' DG A 1 10.547 25.537 -3.107 1.00 5.41 C ATOM 8 C1' DG A 1 10.111 25.379 -4.560 1.00 4.96 C ATOM 9 N9 DG A 1 9.724 24.004 -4.864 1.00 4.94 N ATOM 10 C8 DG A 1 10.494 23.048 -5.483 1.00 5.20 C ATOM 11 N7 DG A 1 9.892 21.901 -5.612 1.00 5.36 N ATOM 12 C5 DG A 1 8.646 22.109 -5.034 1.00 5.21 C ATOM 13 C6 DG A 1 7.550 21.224 -4.879 1.00 4.96 C ATOM 14 O6 DG A 1 7.466 20.041 -5.236 1.00 5.37 O ATOM 15 N1 DG A 1 6.466 21.828 -4.242 1.00 4.87 N ATOM 16 C2 DG A 1 6.436 23.135 -3.814 1.00 5.23 C ATOM 17 N2 DG A 1 5.304 23.543 -3.223 1.00 6.03 N ATOM 18 N3 DG A 1 7.455 23.975 -3.954 1.00 5.48 N ATOM 19 C4 DG A 1 8.524 23.401 -4.566 1.00 5.23 C HETATM 20 P UMS A 2 13.288 24.834 -0.935 1.00 5.83 P HETATM 21 OP1 UMS A 2 14.148 25.686 -0.080 1.00 6.46 O HETATM 22 OP2 UMS A 2 13.814 23.562 -1.469 1.00 6.75 O HETATM 23 O5' UMS A 2 11.944 24.479 -0.150 1.00 5.51 O HETATM 24 C5' UMS A 2 11.263 25.475 0.593 1.00 5.26 C HETATM 25 C4' UMS A 2 9.907 24.980 1.048 1.00 5.46 C HETATM 26 O4' UMS A 2 9.103 24.657 -0.111 1.00 4.84 O HETATM 27 C3' UMS A 2 9.908 23.690 1.838 1.00 6.51 C HETATM 28 O3' UMS A 2 10.358 23.936 3.148 1.00 7.53 O HETATM 29 C2' UMS A 2 8.444 23.282 1.709 1.00 6.61 C HETATM 30 SE2' UMS A 2 7.248 24.378 2.825 0.90 10.25 SE HETATM 31 C1' UMS A 2 8.240 23.581 0.218 1.00 5.44 C HETATM 32 CA' UMS A 2 5.540 23.418 2.735 0.90 8.82 C HETATM 33 N1 UMS A 2 8.564 22.385 -0.635 1.00 4.92 N HETATM 34 C2 UMS A 2 7.617 21.380 -0.732 1.00 5.55 C HETATM 35 O2 UMS A 2 6.531 21.411 -0.182 1.00 6.17 O HETATM 36 N3 UMS A 2 7.984 20.318 -1.517 1.00 4.89 N HETATM 37 C4 UMS A 2 9.183 20.138 -2.191 1.00 5.04 C HETATM 38 O4 UMS A 2 9.363 19.117 -2.856 1.00 5.62 O HETATM 39 C5 UMS A 2 10.128 21.218 -2.043 1.00 5.38 C HETATM 40 C6 UMS A 2 9.787 22.273 -1.285 1.00 5.46 C ATOM 41 P DG A 3 11.215 22.817 3.905 1.00 9.21 P ATOM 42 OP1 DG A 3 11.778 23.444 5.116 1.00 11.05 O ATOM 43 OP2 DG A 3 12.083 22.061 2.976 1.00 9.47 O ATOM 44 O5' DG A 3 9.988 21.992 4.440 1.00 12.37 O ATOM 45 C5' DG A 3 9.914 20.681 4.395 1.00 11.75 C ATOM 46 C4' DG A 3 8.460 20.472 4.705 1.00 10.01 C ATOM 47 O4' DG A 3 7.658 20.731 3.523 1.00 7.92 O ATOM 48 C3' DG A 3 8.325 19.024 5.057 1.00 8.65 C ATOM 49 O3' DG A 3 8.268 18.954 6.462 1.00 8.43 O ATOM 50 C2' DG A 3 7.050 18.636 4.330 1.00 7.44 C ATOM 51 C1' DG A 3 7.148 19.494 3.068 1.00 6.21 C ATOM 52 N9 DG A 3 8.021 18.920 2.034 1.00 5.73 N ATOM 53 C8 DG A 3 9.253 19.351 1.591 1.00 5.96 C ATOM 54 N7 DG A 3 9.770 18.606 0.655 1.00 5.42 N ATOM 55 C5 DG A 3 8.818 17.614 0.458 1.00 5.79 C ATOM 56 C6 DG A 3 8.806 16.512 -0.434 1.00 5.11 C ATOM 57 O6 DG A 3 9.661 16.175 -1.260 1.00 6.02 O ATOM 58 N1 DG A 3 7.645 15.749 -0.307 1.00 5.33 N ATOM 59 C2 DG A 3 6.622 16.011 0.570 1.00 5.26 C ATOM 60 N2 DG A 3 5.579 15.171 0.561 1.00 5.71 N ATOM 61 N3 DG A 3 6.621 17.038 1.408 1.00 5.40 N ATOM 62 C4 DG A 3 7.740 17.795 1.296 1.00 5.63 C ATOM 63 P DT A 4 8.889 17.665 7.164 1.00 8.79 P ATOM 64 OP1 DT A 4 8.639 17.796 8.616 1.00 8.34 O ATOM 65 OP2 DT A 4 10.255 17.435 6.693 1.00 8.05 O ATOM 66 O5' DT A 4 8.017 16.471 6.575 1.00 7.73 O ATOM 67 C5' DT A 4 6.645 16.327 6.935 1.00 7.76 C ATOM 68 C4' DT A 4 6.071 15.119 6.224 1.00 6.60 C ATOM 69 O4' DT A 4 6.153 15.293 4.787 1.00 6.05 O ATOM 70 C3' DT A 4 6.833 13.832 6.480 1.00 7.11 C ATOM 71 O3' DT A 4 6.379 13.329 7.714 1.00 8.27 O ATOM 72 C2' DT A 4 6.401 12.986 5.291 1.00 6.09 C ATOM 73 C1' DT A 4 6.375 14.031 4.179 1.00 5.57 C ATOM 74 N1 DT A 4 7.623 14.068 3.342 1.00 5.28 N ATOM 75 C2 DT A 4 7.770 13.115 2.347 1.00 4.61 C ATOM 76 O2 DT A 4 6.945 12.243 2.125 1.00 4.82 O ATOM 77 N3 DT A 4 8.931 13.216 1.621 1.00 4.39 N ATOM 78 C4 DT A 4 9.939 14.151 1.798 1.00 4.43 C ATOM 79 O4 DT A 4 10.936 14.155 1.086 1.00 5.19 O ATOM 80 C5 DT A 4 9.730 15.123 2.853 1.00 4.87 C ATOM 81 C7 DT A 4 10.761 16.182 3.133 1.00 5.03 C ATOM 82 C6 DT A 4 8.596 15.030 3.569 1.00 5.25 C ATOM 83 P DA A 5 7.218 12.267 8.546 1.00 9.54 P ATOM 84 OP1 DA A 5 6.628 12.223 9.898 1.00 10.90 O ATOM 85 OP2 DA A 5 8.665 12.508 8.373 1.00 11.41 O ATOM 86 O5' DA A 5 6.836 10.906 7.802 1.00 8.54 O ATOM 87 C5' DA A 5 7.812 9.915 7.552 1.00 7.11 C ATOM 88 C4' DA A 5 7.316 9.001 6.452 1.00 5.61 C ATOM 89 O4' DA A 5 7.168 9.751 5.219 1.00 5.50 O ATOM 90 C3' DA A 5 8.263 7.863 6.122 1.00 5.46 C ATOM 91 O3' DA A 5 7.977 6.778 6.981 1.00 5.34 O ATOM 92 C2' DA A 5 7.937 7.588 4.660 1.00 5.42 C ATOM 93 C1' DA A 5 7.739 9.013 4.155 1.00 4.60 C ATOM 94 N9 DA A 5 8.952 9.703 3.703 1.00 4.32 N ATOM 95 C8 DA A 5 9.543 10.809 4.255 1.00 4.09 C ATOM 96 N7 DA A 5 10.612 11.222 3.615 1.00 4.59 N ATOM 97 C5 DA A 5 10.724 10.334 2.560 1.00 4.33 C ATOM 98 C6 DA A 5 11.658 10.229 1.504 1.00 3.91 C ATOM 99 N6 DA A 5 12.681 11.071 1.339 1.00 5.13 N ATOM 100 N1 DA A 5 11.489 9.225 0.612 1.00 3.90 N ATOM 101 C2 DA A 5 10.461 8.375 0.774 1.00 4.17 C ATOM 102 N3 DA A 5 9.523 8.381 1.727 1.00 4.42 N ATOM 103 C4 DA A 5 9.711 9.392 2.594 1.00 4.61 C HETATM 104 P 5HC A 6 9.181 5.885 7.545 1.00 5.84 P HETATM 105 OP1 5HC A 6 8.567 4.917 8.480 1.00 7.26 O HETATM 106 OP2 5HC A 6 10.290 6.743 7.996 1.00 5.87 O HETATM 107 O5' 5HC A 6 9.717 5.134 6.243 1.00 5.20 O HETATM 108 C5' 5HC A 6 8.910 4.178 5.553 1.00 5.26 C HETATM 109 C4' 5HC A 6 9.564 3.787 4.240 1.00 5.15 C HETATM 110 O4' 5HC A 6 9.721 4.944 3.383 1.00 4.69 O HETATM 111 C3' 5HC A 6 10.977 3.238 4.357 1.00 5.03 C HETATM 112 O3' 5HC A 6 10.929 1.876 4.747 1.00 6.05 O HETATM 113 C2' 5HC A 6 11.498 3.430 2.940 1.00 5.75 C HETATM 114 C1' 5HC A 6 10.916 4.802 2.633 1.00 5.00 C HETATM 115 N1 5HC A 6 11.848 5.951 2.916 1.00 4.52 N HETATM 116 C2 5HC A 6 12.862 6.179 2.008 1.00 4.19 C HETATM 117 O2 5HC A 6 13.015 5.477 1.020 1.00 4.78 O HETATM 118 N3 5HC A 6 13.681 7.245 2.300 1.00 4.28 N HETATM 119 C4 5HC A 6 13.586 8.096 3.390 1.00 4.66 C HETATM 120 N4 5HC A 6 14.370 9.033 3.546 1.00 5.23 N HETATM 121 C5 5HC A 6 12.501 7.800 4.311 1.00 4.64 C HETATM 122 C5M 5HC A 6 12.303 8.608 5.587 1.00 5.58 C HETATM 123 O5 5HC A 6 13.483 8.552 6.379 1.00 6.82 O HETATM 124 C6 5HC A 6 11.696 6.761 4.030 1.00 4.13 C ATOM 125 P DA A 7 12.158 1.198 5.508 1.00 5.89 P ATOM 126 OP1 DA A 7 11.673 -0.109 6.005 1.00 7.06 O ATOM 127 OP2 DA A 7 12.783 2.158 6.444 1.00 5.48 O ATOM 128 O5' DA A 7 13.232 0.951 4.348 1.00 5.64 O ATOM 129 C5' DA A 7 12.991 0.000 3.317 1.00 5.63 C ATOM 130 C4' DA A 7 14.163 -0.017 2.358 1.00 4.96 C ATOM 131 O4' DA A 7 14.303 1.288 1.735 1.00 4.61 O ATOM 132 C3' DA A 7 15.514 -0.278 3.007 1.00 4.71 C ATOM 133 O3' DA A 7 15.738 -1.680 3.075 1.00 5.50 O ATOM 134 C2' DA A 7 16.489 0.412 2.057 1.00 4.79 C ATOM 135 C1' DA A 7 15.679 1.610 1.604 1.00 3.99 C ATOM 136 N9 DA A 7 15.883 2.877 2.308 1.00 3.40 N ATOM 137 C8 DA A 7 15.155 3.377 3.360 1.00 3.73 C ATOM 138 N7 DA A 7 15.542 4.567 3.745 1.00 3.36 N ATOM 139 C5 DA A 7 16.587 4.872 2.889 1.00 3.06 C ATOM 140 C6 DA A 7 17.425 6.003 2.777 1.00 3.41 C ATOM 141 N6 DA A 7 17.306 7.068 3.575 1.00 3.33 N ATOM 142 N1 DA A 7 18.377 5.983 1.810 1.00 3.63 N ATOM 143 C2 DA A 7 18.475 4.910 1.013 1.00 4.00 C ATOM 144 N3 DA A 7 17.743 3.797 1.028 1.00 3.84 N ATOM 145 C4 DA A 7 16.805 3.842 1.994 1.00 3.21 C ATOM 146 P DC A 8 16.675 -2.300 4.209 1.00 6.04 P ATOM 147 OP1 DC A 8 16.614 -3.769 4.023 1.00 6.67 O ATOM 148 OP2 DC A 8 16.311 -1.733 5.527 1.00 7.06 O ATOM 149 O5' DC A 8 18.136 -1.784 3.830 1.00 5.84 O ATOM 150 C5' DC A 8 18.779 -2.276 2.650 1.00 6.30 C ATOM 151 C4' DC A 8 20.122 -1.598 2.457 1.00 5.85 C ATOM 152 O4' DC A 8 19.898 -0.167 2.399 1.00 5.43 O ATOM 153 C3' DC A 8 21.133 -1.867 3.572 1.00 7.25 C ATOM 154 O3' DC A 8 22.404 -2.214 3.032 1.00 9.43 O ATOM 155 C2' DC A 8 21.212 -0.542 4.315 1.00 6.52 C ATOM 156 C1' DC A 8 20.810 0.482 3.252 1.00 5.93 C ATOM 157 N1 DC A 8 20.192 1.710 3.850 1.00 5.05 N ATOM 158 C2 DC A 8 20.767 2.971 3.615 1.00 5.32 C ATOM 159 O2 DC A 8 21.764 3.064 2.884 1.00 5.31 O ATOM 160 N3 DC A 8 20.189 4.058 4.194 1.00 4.51 N ATOM 161 C4 DC A 8 19.107 3.924 4.972 1.00 4.92 C ATOM 162 N4 DC A 8 18.596 5.021 5.531 1.00 4.81 N ATOM 163 C5 DC A 8 18.503 2.654 5.212 1.00 4.42 C ATOM 164 C6 DC A 8 19.080 1.588 4.643 1.00 5.12 C TER 165 DC A 8 HETATM 166 O HOH A 101 8.855 2.342 8.808 1.00 20.91 O HETATM 167 O HOH A 102 5.983 4.743 8.948 1.00 19.46 O HETATM 168 O HOH A 103 17.014 0.079 7.337 1.00 11.75 O HETATM 169 O HOH A 104 12.362 18.808 5.831 1.00 19.27 O HETATM 170 O HOH A 105 16.529 26.613 -0.862 1.00 12.85 O HETATM 171 O HOH A 106 14.359 26.099 2.564 1.00 22.11 O HETATM 172 O HOH A 107 11.580 20.006 -6.502 1.00 24.21 O HETATM 173 O HOH A 108 3.898 21.995 -0.226 1.00 8.12 O HETATM 174 O HOH A 109 8.811 18.025 -6.464 1.00 9.20 O HETATM 175 O HOH A 110 4.145 25.975 -2.854 1.00 14.63 O HETATM 176 O HOH A 111 12.270 18.980 -0.414 1.00 11.91 O HETATM 177 O HOH A 112 14.065 -4.680 4.516 1.00 16.65 O HETATM 178 O HOH A 113 12.908 5.934 8.352 1.00 10.00 O HETATM 179 O HOH A 114 16.708 -5.044 1.573 1.00 6.37 O HETATM 180 O HOH A 115 15.872 7.167 6.136 1.00 6.04 O HETATM 181 O HOH A 116 12.429 13.021 4.690 1.00 19.04 O HETATM 182 O HOH A 117 13.767 -1.862 6.644 1.00 11.78 O HETATM 183 O HOH A 118 10.151 8.693 9.992 1.00 18.90 O HETATM 184 O HOH A 119 13.371 21.750 -3.551 1.00 22.82 O HETATM 185 O HOH A 120 13.179 21.450 0.260 1.00 13.01 O HETATM 186 O HOH A 121 7.166 6.863 1.334 1.00 5.81 O HETATM 187 O HOH A 122 15.490 2.308 7.295 1.00 10.44 O HETATM 188 O HOH A 123 13.719 4.839 5.938 1.00 6.82 O HETATM 189 O HOH A 124 14.304 23.431 -8.206 1.00 11.86 O HETATM 190 O HOH A 125 24.005 -0.163 1.743 1.00 21.93 O HETATM 191 O HOH A 126 24.242 -4.269 3.962 1.00 26.47 O HETATM 192 O HOH A 127 18.998 1.354 -0.021 1.00 7.17 O HETATM 193 O HOH A 128 6.701 20.185 8.659 1.00 9.99 O HETATM 194 O HOH A 129 11.052 14.568 6.438 1.00 28.33 O HETATM 195 O HOH A 130 14.731 11.505 5.457 1.00 26.16 O HETATM 196 O HOH A 131 12.294 26.750 5.336 1.00 30.09 O HETATM 197 O HOH A 132 24.420 1.255 4.068 1.00 11.12 O HETATM 198 O HOH A 133 4.084 24.970 -0.235 1.00 16.26 O HETATM 199 O HOH A 134 6.119 4.628 2.616 1.00 11.13 O HETATM 200 O HOH A 135 11.969 -3.446 3.203 1.00 13.74 O HETATM 201 O HOH A 136 13.357 17.901 -2.488 1.00 27.72 O HETATM 202 O HOH A 137 8.226 8.218 11.885 0.50 39.58 O CONECT 6 20 CONECT 20 6 21 22 23 CONECT 21 20 CONECT 22 20 CONECT 23 20 24 CONECT 24 23 25 CONECT 25 24 26 27 CONECT 26 25 31 CONECT 27 25 28 29 CONECT 28 27 41 CONECT 29 27 30 31 CONECT 30 29 32 CONECT 31 26 29 33 CONECT 32 30 CONECT 33 31 34 40 CONECT 34 33 35 36 CONECT 35 34 CONECT 36 34 37 CONECT 37 36 38 39 CONECT 38 37 CONECT 39 37 40 CONECT 40 33 39 CONECT 41 28 CONECT 91 104 CONECT 104 91 105 106 107 CONECT 105 104 CONECT 106 104 CONECT 107 104 108 CONECT 108 107 109 CONECT 109 108 110 111 CONECT 110 109 114 CONECT 111 109 112 113 CONECT 112 111 125 CONECT 113 111 114 CONECT 114 110 113 115 CONECT 115 114 116 124 CONECT 116 115 117 118 CONECT 117 116 CONECT 118 116 119 CONECT 119 118 120 121 CONECT 120 119 CONECT 121 119 122 124 CONECT 122 121 123 CONECT 123 122 CONECT 124 115 121 CONECT 125 112 MASTER 292 0 2 0 0 0 0 6 201 1 46 1 END