HEADER DNA 19-APR-18 6D54 TITLE LOW TEMPERATURE JOINT X-RAY/NEUTRON STRUCTURE OF DNA OLIGONUCLEOTIDE TITLE 2 D(GTGGCCAC)2 WITH 2'-SECH3 MODIFICATION ON CYT5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*GP*TP*GP*GP*(CSL)P*CP*AP*C)-3'); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS DNA, OLIGONUCLEOTIDE, SELENIUM MODIFICATION EXPDTA X-RAY DIFFRACTION; NEUTRON DIFFRACTION AUTHOR A.KOVALEVSKY,Z.HUANG,V.G.VANDAVASI REVDAT 4 04-OCT-23 6D54 1 REMARK REVDAT 3 02-MAR-22 6D54 1 COMPND REMARK SEQRES LINK REVDAT 2 19-DEC-18 6D54 1 JRNL REVDAT 1 17-OCT-18 6D54 0 JRNL AUTH V.G.VANDAVASI,M.P.BLAKELEY,D.A.KEEN,L.R.HU,Z.HUANG, JRNL AUTH 2 A.KOVALEVSKY JRNL TITL TEMPERATURE-INDUCED REPLACEMENT OF PHOSPHATE PROTON WITH JRNL TITL 2 METAL ION CAPTURED IN NEUTRON STRUCTURES OF A-DNA. JRNL REF STRUCTURE V. 26 1645 2018 JRNL REFN ISSN 1878-4186 JRNL PMID 30244969 JRNL DOI 10.1016/J.STR.2018.08.001 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.D.ADAMS,M.MUSTYAKIMOV,P.V.AFONINE,P.LANGAN REMARK 1 TITL GENERALIZED X-RAY AND NEUTRON CRYSTALLOGRAPHIC ANALYSIS: REMARK 1 TITL 2 MORE ACCURATE AND COMPLETE STRUCTURES FOR BIOLOGICAL REMARK 1 TITL 3 MACROMOLECULES. REMARK 1 REF ACTA CRYSTALLOGR. D BIOL. V. 65 567 2009 REMARK 1 REF 2 CRYSTALLOGR. REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 19465771 REMARK 1 DOI 10.1107/S0907444909011548 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NCNS 1.0.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN,MUSTYAKIMOV, REMARK 3 : AFONINE,LANGAN REMARK 3 X-RAY DATA. REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.500 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 2800 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 136 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.73 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 317 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE : 0.5100 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 18 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 163 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 39 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM SIGMAA (A) : 0.07 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.18 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 0.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 3 NEUTRON DATA. REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.500 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 82.3 REMARK 3 NUMBER OF REFLECTIONS : 1572 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 65 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.99 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 65.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 149 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 6 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 163 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 39 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM SIGMAA (A) : 0.19 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 0.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6D54 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000234003. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC VARIMAX REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 2866 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.20 REMARK 200 R MERGE FOR SHELL (I) : 0.14900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER, CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 230 REMARK 230 EXPERIMENTAL DETAILS REMARK 230 EXPERIMENT TYPE : NEUTRON DIFFRACTION REMARK 230 DATE OF DATA COLLECTION : 20-NOV-17 REMARK 230 TEMPERATURE (KELVIN) : 100.0 REMARK 230 PH : 5.60 REMARK 230 NUMBER OF CRYSTALS USED : 1 REMARK 230 REMARK 230 NEUTRON SOURCE : NUCLEAR REACTOR REMARK 230 BEAMLINE : LADI III REMARK 230 WAVELENGTH OR RANGE (A) : 2.8-4.0 REMARK 230 MONOCHROMATOR : NULL REMARK 230 OPTICS : COLLIMATORS REMARK 230 REMARK 230 DETECTOR TYPE : IMAGE PLATE REMARK 230 DETECTOR MANUFACTURER : LADI III REMARK 230 INTENSITY-INTEGRATION SOFTWARE : HKL-3000, LAUEGEN REMARK 230 DATA SCALING SOFTWARE : HKL-3000, LSCALE REMARK 230 REMARK 230 NUMBER OF UNIQUE REFLECTIONS : 1629 REMARK 230 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 230 RESOLUTION RANGE LOW (A) : 21.300 REMARK 230 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 230 REMARK 230 OVERALL. REMARK 230 COMPLETENESS FOR RANGE (%) : 84.6 REMARK 230 DATA REDUNDANCY : 7.000 REMARK 230 R MERGE (I) : 0.17900 REMARK 230 R SYM (I) : NULL REMARK 230 FOR THE DATA SET : 9.1000 REMARK 230 REMARK 230 IN THE HIGHEST RESOLUTION SHELL. REMARK 230 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 230 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 230 COMPLETENESS FOR SHELL (%) : 66.0 REMARK 230 DATA REDUNDANCY IN SHELL : 3.40 REMARK 230 R MERGE FOR SHELL (I) : 0.22600 REMARK 230 R SYM FOR SHELL (I) : NULL REMARK 230 FOR SHELL : NULL REMARK 230 REMARK 230 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 230 SOFTWARE USED : PHASER, CNS REMARK 230 STARTING MODEL: NULL REMARK 230 REMARK 230 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MAGNESIUM ACETATE, 30% MPD, 0.1 REMARK 280 M MES, PH 5.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 303K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 12.15350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 20.94200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 20.94200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 18.23025 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 20.94200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 20.94200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 6.07675 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 20.94200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 20.94200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 18.23025 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 20.94200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 20.94200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 6.07675 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 12.15350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -12.15350 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1P CSL A 5 D2 DOD A 201 1.51 REMARK 500 O2P CSL A 5 D2 DOD A 202 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 D1 DOD A 214 O DOD A 230 4555 1.54 REMARK 500 O DOD A 203 D1 DOD A 231 8554 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 DOD A 239 DISTANCE = 6.09 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA A 7 OP2 REMARK 620 2 DOD A 218 O 89.3 REMARK 620 3 DOD A 224 O 92.0 96.2 REMARK 620 4 DOD A 226 O 91.2 174.5 89.2 REMARK 620 5 DOD A 229 O 92.0 94.0 169.0 80.4 REMARK 620 6 DOD A 236 O 171.7 95.0 94.6 83.8 80.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DOD A 208 O REMARK 620 2 DOD A 209 O 100.1 REMARK 620 3 DOD A 210 O 98.9 83.3 REMARK 620 4 DOD A 235 O 90.2 88.9 169.0 REMARK 620 5 DOD A 237 O 99.1 160.8 94.3 90.5 REMARK 620 6 DOD A 238 O 174.5 76.1 84.6 85.9 84.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6D4L RELATED DB: PDB DBREF 6D54 A 1 8 PDB 6D54 6D54 1 8 SEQRES 1 A 8 DG DT DG DG CSL DC DA DC HET CSL A 5 34 HET MG A 101 1 HET MG A 102 1 HETNAM CSL (D)-2'-METHYLSELENYL-2'-DEOXYCYTIDINE-5'-PHOSPHATE HETNAM MG MAGNESIUM ION HETSYN CSL (D)-2'-DEOXY-2'-SE-METHYLCYTIDINE-5'-PHOSPHATE FORMUL 1 CSL C10 H16 N3 O7 P SE FORMUL 2 MG 2(MG 2+) FORMUL 4 DOD *39(D2 O) LINK O3' DG A 4 P CSL A 5 1555 1555 1.62 LINK O3' CSL A 5 P DC A 6 1555 1555 1.61 LINK OP2 DA A 7 MG MG A 102 1555 1555 1.98 LINK MG MG A 101 O DOD A 208 1555 1555 2.09 LINK MG MG A 101 O DOD A 209 1555 1555 2.22 LINK MG MG A 101 O DOD A 210 1555 1555 1.87 LINK MG MG A 101 O DOD A 235 1555 1555 2.24 LINK MG MG A 101 O DOD A 237 1555 1555 2.01 LINK MG MG A 101 O DOD A 238 1555 1555 2.10 LINK MG MG A 102 O DOD A 218 1555 1555 2.05 LINK MG MG A 102 O DOD A 224 1555 1555 2.10 LINK MG MG A 102 O DOD A 226 1555 1555 2.20 LINK MG MG A 102 O DOD A 229 1555 1555 2.30 LINK MG MG A 102 O DOD A 236 1555 4555 2.14 SITE 1 AC1 6 DOD A 208 DOD A 209 DOD A 210 DOD A 235 SITE 2 AC1 6 DOD A 237 DOD A 238 SITE 1 AC2 5 DA A 7 DOD A 218 DOD A 224 DOD A 226 SITE 2 AC2 5 DOD A 229 CRYST1 41.884 41.884 24.307 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023875 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023875 0.000000 0.00000 SCALE3 0.000000 0.000000 0.041140 0.00000 ATOM 1 O5' DG A 1 -1.098 -7.119 -10.748 1.00 23.22 O ATOM 2 C5' DG A 1 -2.483 -6.903 -10.465 1.00 20.91 C ATOM 3 C4' DG A 1 -3.071 -8.092 -9.735 1.00 17.86 C ATOM 4 O4' DG A 1 -3.071 -9.232 -10.629 1.00 17.81 O ATOM 5 C3' DG A 1 -2.326 -8.588 -8.495 1.00 18.20 C ATOM 6 O3' DG A 1 -2.744 -7.858 -7.332 1.00 18.58 O ATOM 7 C2' DG A 1 -2.788 -10.034 -8.428 1.00 15.93 C ATOM 8 C1' DG A 1 -2.777 -10.423 -9.900 1.00 15.68 C ATOM 9 N9 DG A 1 -1.499 -10.939 -10.384 1.00 13.39 N ATOM 10 C8 DG A 1 -0.606 -10.299 -11.218 1.00 15.96 C ATOM 11 N7 DG A 1 0.438 -11.025 -11.509 1.00 17.38 N ATOM 12 C5 DG A 1 0.234 -12.211 -10.811 1.00 15.18 C ATOM 13 C6 DG A 1 1.029 -13.371 -10.729 1.00 15.76 C ATOM 14 O6 DG A 1 2.112 -13.603 -11.271 1.00 14.27 O ATOM 15 N1 DG A 1 0.450 -14.332 -9.912 1.00 13.90 N ATOM 16 C2 DG A 1 -0.738 -14.196 -9.244 1.00 14.43 C ATOM 17 N2 DG A 1 -1.090 -15.228 -8.465 1.00 12.58 N ATOM 18 N3 DG A 1 -1.504 -13.125 -9.318 1.00 12.43 N ATOM 19 C4 DG A 1 -0.958 -12.172 -10.111 1.00 15.34 C ATOM 20 H5' DG A 1 -3.027 -6.757 -11.402 1.00 21.67 H ATOM 21 H5'' DG A 1 -2.591 -6.010 -9.847 1.00 21.60 H ATOM 22 H4' DG A 1 -4.074 -7.814 -9.406 1.00 19.49 H ATOM 23 H3' DG A 1 -1.245 -8.503 -8.621 1.00 17.79 H ATOM 24 H2' DG A 1 -2.122 -10.651 -7.832 1.00 17.70 H ATOM 25 H2'' DG A 1 -3.779 -10.110 -7.969 1.00 16.68 H ATOM 26 H1' DG A 1 -3.557 -11.155 -10.126 1.00 16.27 H ATOM 27 D8 A DG A 1 -0.754 -9.295 -11.592 0.24 16.17 D ATOM 28 H8 B DG A 1 -0.754 -9.295 -11.592 0.76 16.17 H ATOM 29 D1 A DG A 1 0.946 -15.201 -9.797 0.65 15.25 D ATOM 30 H1 B DG A 1 0.946 -15.201 -9.797 0.35 15.25 H ATOM 31 D21A DG A 1 -1.940 -15.194 -7.925 0.85 13.83 D ATOM 32 H21B DG A 1 -1.940 -15.194 -7.925 0.15 13.83 H ATOM 33 D22A DG A 1 -0.499 -16.045 -8.421 0.38 13.28 D ATOM 34 H22B DG A 1 -0.499 -16.045 -8.421 0.62 13.28 H ATOM 35 D5TA DG A 1 -0.608 -6.693 -10.043 0.58 22.22 D ATOM 36 H5TB DG A 1 -0.608 -6.693 -10.043 0.42 22.22 H ATOM 37 P DT A 2 -1.729 -7.619 -6.099 1.00 20.13 P ATOM 38 OP1 DT A 2 -2.431 -6.723 -5.136 1.00 19.73 O ATOM 39 OP2 DT A 2 -0.398 -7.232 -6.600 1.00 19.90 O ATOM 40 O5' DT A 2 -1.557 -9.058 -5.445 1.00 18.64 O ATOM 41 C5' DT A 2 -2.553 -9.610 -4.605 1.00 17.58 C ATOM 42 C4' DT A 2 -2.184 -11.026 -4.226 1.00 19.61 C ATOM 43 O4' DT A 2 -2.013 -11.850 -5.408 1.00 17.69 O ATOM 44 C3' DT A 2 -0.866 -11.199 -3.479 1.00 20.41 C ATOM 45 O3' DT A 2 -1.016 -10.826 -2.100 1.00 23.31 O ATOM 46 C2' DT A 2 -0.641 -12.691 -3.659 1.00 19.47 C ATOM 47 C1' DT A 2 -0.998 -12.831 -5.144 1.00 18.17 C ATOM 48 N1 DT A 2 0.161 -12.574 -6.056 1.00 15.71 N ATOM 49 C2 DT A 2 1.053 -13.609 -6.251 1.00 16.15 C ATOM 50 O2 DT A 2 0.981 -14.681 -5.661 1.00 14.87 O ATOM 51 N3 DT A 2 2.055 -13.335 -7.140 1.00 13.46 N ATOM 52 C4 DT A 2 2.286 -12.161 -7.813 1.00 15.73 C ATOM 53 O4 DT A 2 3.207 -12.100 -8.618 1.00 16.70 O ATOM 54 C5 DT A 2 1.356 -11.090 -7.534 1.00 16.71 C ATOM 55 C7 DT A 2 1.610 -9.740 -8.154 1.00 16.55 C ATOM 56 C6 DT A 2 0.339 -11.345 -6.683 1.00 14.82 C ATOM 57 H5' DT A 2 -3.507 -9.618 -5.127 1.00 16.63 H ATOM 58 H5'' DT A 2 -2.648 -9.008 -3.698 1.00 17.73 H ATOM 59 H4' DT A 2 -2.968 -11.399 -3.561 1.00 18.18 H ATOM 60 H3' DT A 2 -0.069 -10.604 -3.936 1.00 22.80 H ATOM 61 H2' DT A 2 0.388 -12.970 -3.452 1.00 19.92 H ATOM 62 H2'' DT A 2 -1.266 -13.273 -2.974 1.00 19.36 H ATOM 63 H1' DT A 2 -1.416 -13.816 -5.367 1.00 19.20 H ATOM 64 D3 A DT A 2 2.706 -14.071 -7.329 0.63 15.08 D ATOM 65 H3 B DT A 2 2.706 -14.071 -7.329 0.37 15.08 H ATOM 66 H71 DT A 2 1.378 -9.778 -9.219 1.00 17.51 H ATOM 67 H72 DT A 2 0.989 -8.983 -7.676 1.00 17.80 H ATOM 68 H73 DT A 2 2.662 -9.471 -8.026 1.00 18.25 H ATOM 69 H6 DT A 2 -0.372 -10.546 -6.472 1.00 18.86 H ATOM 70 P DG A 3 0.227 -10.181 -1.295 1.00 24.84 P ATOM 71 OP1 DG A 3 -0.299 -9.725 0.020 1.00 24.78 O ATOM 72 OP2 DG A 3 0.998 -9.232 -2.140 1.00 22.46 O ATOM 73 O5' DG A 3 1.182 -11.424 -1.044 1.00 22.22 O ATOM 74 C5' DG A 3 0.800 -12.467 -0.159 1.00 22.85 C ATOM 75 C4' DG A 3 1.771 -13.619 -0.274 1.00 22.67 C ATOM 76 O4' DG A 3 1.721 -14.175 -1.613 1.00 21.55 O ATOM 77 C3' DG A 3 3.251 -13.293 -0.104 1.00 21.65 C ATOM 78 O3' DG A 3 3.605 -13.097 1.277 1.00 24.32 O ATOM 79 C2' DG A 3 3.864 -14.561 -0.672 1.00 21.69 C ATOM 80 C1' DG A 3 3.013 -14.722 -1.931 1.00 20.56 C ATOM 81 N9 DG A 3 3.564 -14.004 -3.084 1.00 20.57 N ATOM 82 C8 DG A 3 3.220 -12.753 -3.530 1.00 17.87 C ATOM 83 N7 DG A 3 3.915 -12.366 -4.564 1.00 19.29 N ATOM 84 C5 DG A 3 4.777 -13.421 -4.817 1.00 18.10 C ATOM 85 C6 DG A 3 5.783 -13.565 -5.813 1.00 19.13 C ATOM 86 O6 DG A 3 6.117 -12.760 -6.693 1.00 18.05 O ATOM 87 N1 DG A 3 6.429 -14.790 -5.712 1.00 15.66 N ATOM 88 C2 DG A 3 6.149 -15.752 -4.779 1.00 16.74 C ATOM 89 N2 DG A 3 6.884 -16.867 -4.830 1.00 14.77 N ATOM 90 N3 DG A 3 5.209 -15.633 -3.850 1.00 18.40 N ATOM 91 C4 DG A 3 4.572 -14.445 -3.925 1.00 19.15 C ATOM 92 H5' DG A 3 -0.203 -12.818 -0.413 1.00 23.47 H ATOM 93 H5'' DG A 3 0.799 -12.094 0.868 1.00 23.21 H ATOM 94 H4' DG A 3 1.510 -14.349 0.501 1.00 22.44 H ATOM 95 H3' DG A 3 3.526 -12.404 -0.684 1.00 23.14 H ATOM 96 H2' DG A 3 4.917 -14.433 -0.900 1.00 21.42 H ATOM 97 H2'' DG A 3 3.796 -15.389 0.040 1.00 24.70 H ATOM 98 H1' DG A 3 2.874 -15.770 -2.192 1.00 20.71 H ATOM 99 D8 A DG A 3 2.469 -12.136 -3.060 0.31 18.80 D ATOM 100 H8 B DG A 3 2.469 -12.136 -3.060 0.69 18.80 H ATOM 101 D1 A DG A 3 7.154 -14.964 -6.386 0.92 18.55 D ATOM 102 H1 B DG A 3 7.154 -14.964 -6.386 0.08 18.55 H ATOM 103 D21A DG A 3 6.671 -17.573 -4.135 0.96 15.23 D ATOM 104 H21B DG A 3 6.671 -17.573 -4.135 0.04 15.23 H ATOM 105 D22A DG A 3 7.615 -17.003 -5.508 0.73 12.92 D ATOM 106 H22B DG A 3 7.615 -17.003 -5.508 0.27 12.92 H ATOM 107 P DG A 4 4.909 -12.230 1.661 1.00 25.08 P ATOM 108 OP1 DG A 4 4.923 -12.092 3.141 1.00 26.33 O ATOM 109 OP2 DG A 4 4.945 -11.009 0.817 1.00 25.39 O ATOM 110 O5' DG A 4 6.132 -13.148 1.210 1.00 24.75 O ATOM 111 C5' DG A 4 6.403 -14.395 1.851 1.00 25.26 C ATOM 112 C4' DG A 4 7.465 -15.148 1.082 1.00 24.83 C ATOM 113 O4' DG A 4 7.003 -15.343 -0.279 1.00 23.19 O ATOM 114 C3' DG A 4 8.814 -14.447 0.901 1.00 24.41 C ATOM 115 O3' DG A 4 9.682 -14.573 2.053 1.00 26.71 O ATOM 116 C2' DG A 4 9.371 -15.220 -0.277 1.00 23.69 C ATOM 117 C1' DG A 4 8.130 -15.315 -1.163 1.00 22.35 C ATOM 118 N9 DG A 4 8.000 -14.171 -2.064 1.00 18.69 N ATOM 119 C8 DG A 4 7.182 -13.070 -1.944 1.00 17.77 C ATOM 120 N7 DG A 4 7.324 -12.213 -2.918 1.00 17.02 N ATOM 121 C5 DG A 4 8.304 -12.775 -3.723 1.00 15.59 C ATOM 122 C6 DG A 4 8.895 -12.300 -4.906 1.00 14.07 C ATOM 123 O6 DG A 4 8.665 -11.245 -5.529 1.00 17.23 O ATOM 124 N1 DG A 4 9.861 -13.175 -5.375 1.00 13.70 N ATOM 125 C2 DG A 4 10.220 -14.358 -4.790 1.00 11.26 C ATOM 126 N2 DG A 4 11.209 -15.039 -5.387 1.00 14.05 N ATOM 127 N3 DG A 4 9.658 -14.832 -3.696 1.00 13.09 N ATOM 128 C4 DG A 4 8.725 -13.986 -3.212 1.00 16.36 C ATOM 129 H5' DG A 4 5.493 -14.997 1.889 1.00 25.34 H ATOM 130 H5'' DG A 4 6.754 -14.216 2.867 1.00 25.48 H ATOM 131 H4' DG A 4 7.657 -16.089 1.607 1.00 24.48 H ATOM 132 H3' DG A 4 8.670 -13.386 0.665 1.00 25.26 H ATOM 133 H2' DG A 4 10.184 -14.682 -0.760 1.00 22.74 H ATOM 134 H2'' DG A 4 9.780 -16.185 0.040 1.00 24.60 H ATOM 135 H1' DG A 4 8.124 -16.235 -1.750 1.00 23.06 H ATOM 136 D8 A DG A 4 6.515 -12.910 -1.112 0.24 17.58 D ATOM 137 H8 B DG A 4 6.515 -12.910 -1.112 0.76 17.58 H ATOM 138 D1 A DG A 4 10.311 -12.894 -6.200 0.73 12.29 D ATOM 139 H1 B DG A 4 10.311 -12.894 -6.200 0.27 12.29 H ATOM 140 D21A DG A 4 11.511 -15.918 -4.989 0.66 11.82 D ATOM 141 H21B DG A 4 11.511 -15.918 -4.989 0.34 11.82 H ATOM 142 D22A DG A 4 11.694 -14.619 -6.173 0.92 9.61 D ATOM 143 H22B DG A 4 11.694 -14.619 -6.173 0.08 9.61 H HETATM 144 P CSL A 5 10.897 -13.529 2.259 1.00 26.16 P HETATM 145 O2P CSL A 5 10.435 -12.176 1.910 1.00 26.71 O HETATM 146 O1P CSL A 5 11.538 -13.749 3.565 1.00 28.83 O HETATM 147 O5' CSL A 5 12.020 -13.793 1.141 1.00 24.70 O HETATM 148 C5' CSL A 5 12.917 -14.897 1.169 1.00 20.84 C HETATM 149 C4' CSL A 5 13.675 -14.963 -0.118 1.00 17.87 C HETATM 150 O4' CSL A 5 12.766 -14.792 -1.230 1.00 17.42 O HETATM 151 C1' CSL A 5 13.438 -14.138 -2.303 1.00 15.23 C HETATM 152 N1 CSL A 5 12.682 -12.875 -2.617 1.00 14.82 N HETATM 153 C2 CSL A 5 12.936 -12.258 -3.857 1.00 16.29 C HETATM 154 O2 CSL A 5 13.764 -12.738 -4.625 1.00 16.35 O HETATM 155 N3 CSL A 5 12.233 -11.117 -4.180 1.00 16.75 N HETATM 156 C4 CSL A 5 11.331 -10.595 -3.350 1.00 17.05 C HETATM 157 N4 CSL A 5 10.691 -9.490 -3.747 1.00 16.79 N HETATM 158 C5 CSL A 5 11.049 -11.186 -2.079 1.00 16.97 C HETATM 159 C6 CSL A 5 11.738 -12.309 -1.756 1.00 15.26 C HETATM 160 C2' CSL A 5 14.861 -13.940 -1.860 1.00 15.59 C HETATM 161 SE2' CSL A 5 15.920 -15.514 -2.485 1.00 5.01 SE HETATM 162 CA' CSL A 5 16.010 -15.118 -4.372 1.00 12.70 C HETATM 163 C3' CSL A 5 14.714 -13.882 -0.354 1.00 14.90 C HETATM 164 O3' CSL A 5 15.900 -14.178 0.349 1.00 17.30 O HETATM 165 H5'1 CSL A 5 12.327 -15.816 1.259 1.00 23.50 H HETATM 166 H5'2 CSL A 5 13.606 -14.797 2.006 1.00 22.46 H HETATM 167 H4' CSL A 5 14.168 -15.928 -0.034 1.00 17.56 H HETATM 168 H1' CSL A 5 13.446 -14.719 -3.218 1.00 16.95 H HETATM 169 DN41 CSL A 5 9.974 -9.091 -3.166 1.00 18.80 D HETATM 170 DN42 CSL A 5 10.918 -9.061 -4.632 1.00 17.82 D HETATM 171 H5 CSL A 5 10.314 -10.757 -1.403 1.00 17.23 H HETATM 172 H6 CSL A 5 11.548 -12.787 -0.797 1.00 15.96 H HETATM 173 H2' CSL A 5 15.360 -13.054 -2.246 1.00 14.32 H HETATM 174 HA'1 CSL A 5 16.711 -15.781 -4.854 1.00 12.45 H HETATM 175 HA'2 CSL A 5 16.358 -14.087 -4.496 1.00 10.73 H HETATM 176 HA'3 CSL A 5 15.025 -15.232 -4.822 1.00 9.87 H HETATM 177 H3' CSL A 5 14.427 -12.893 0.012 1.00 17.44 H ATOM 178 P DC A 6 16.852 -12.979 0.832 1.00 17.66 P ATOM 179 OP1 DC A 6 17.892 -13.669 1.642 1.00 20.01 O ATOM 180 OP2 DC A 6 16.051 -11.891 1.445 1.00 18.94 O ATOM 181 O5' DC A 6 17.537 -12.383 -0.479 1.00 17.78 O ATOM 182 C5' DC A 6 18.541 -13.115 -1.187 1.00 17.51 C ATOM 183 C4' DC A 6 18.967 -12.351 -2.421 1.00 17.48 C ATOM 184 O4' DC A 6 17.866 -12.233 -3.354 1.00 15.88 O ATOM 185 C3' DC A 6 19.403 -10.911 -2.183 1.00 16.42 C ATOM 186 O3' DC A 6 20.764 -10.903 -1.730 1.00 18.92 O ATOM 187 C2' DC A 6 19.265 -10.322 -3.580 1.00 16.34 C ATOM 188 C1' DC A 6 17.982 -10.994 -4.068 1.00 16.08 C ATOM 189 N1 DC A 6 16.768 -10.185 -3.810 1.00 14.26 N ATOM 190 C2 DC A 6 16.418 -9.200 -4.736 1.00 15.95 C ATOM 191 O2 DC A 6 17.176 -8.996 -5.703 1.00 17.99 O ATOM 192 N3 DC A 6 15.283 -8.487 -4.553 1.00 12.80 N ATOM 193 C4 DC A 6 14.523 -8.709 -3.472 1.00 15.91 C ATOM 194 N4 DC A 6 13.398 -7.999 -3.343 1.00 15.78 N ATOM 195 C5 DC A 6 14.876 -9.680 -2.485 1.00 14.79 C ATOM 196 C6 DC A 6 15.992 -10.391 -2.696 1.00 14.95 C ATOM 197 H5' DC A 6 18.154 -14.087 -1.486 1.00 18.63 H ATOM 198 H5'' DC A 6 19.409 -13.261 -0.541 1.00 18.44 H ATOM 199 H4' DC A 6 19.828 -12.873 -2.845 1.00 20.12 H ATOM 200 H3' DC A 6 18.760 -10.410 -1.451 1.00 17.53 H ATOM 201 H2' DC A 6 19.181 -9.240 -3.557 1.00 16.18 H ATOM 202 H2'' DC A 6 20.138 -10.557 -4.196 1.00 16.55 H ATOM 203 H1' DC A 6 18.031 -11.229 -5.136 1.00 13.86 H ATOM 204 D41A DC A 6 12.786 -8.137 -2.558 0.93 16.54 D ATOM 205 H41B DC A 6 12.786 -8.137 -2.558 0.07 16.54 H ATOM 206 D42A DC A 6 13.148 -7.323 -4.040 0.98 16.46 D ATOM 207 H42B DC A 6 13.148 -7.323 -4.040 0.02 16.46 H ATOM 208 H5 DC A 6 14.260 -9.838 -1.594 1.00 16.77 H ATOM 209 H6 DC A 6 16.290 -11.144 -1.965 1.00 11.77 H ATOM 210 P DA A 7 21.309 -9.684 -0.839 1.00 19.91 P ATOM 211 OP1 DA A 7 22.692 -10.007 -0.411 1.00 21.83 O ATOM 212 OP2 DA A 7 20.297 -9.386 0.161 1.00 19.89 O ATOM 213 O5' DA A 7 21.337 -8.447 -1.838 1.00 18.55 O ATOM 214 C5' DA A 7 22.276 -8.394 -2.905 1.00 16.93 C ATOM 215 C4' DA A 7 21.917 -7.274 -3.852 1.00 16.10 C ATOM 216 O4' DA A 7 20.574 -7.445 -4.358 1.00 15.48 O ATOM 217 C3' DA A 7 21.910 -5.869 -3.263 1.00 15.43 C ATOM 218 O3' DA A 7 23.263 -5.393 -3.187 1.00 17.07 O ATOM 219 C2' DA A 7 21.087 -5.120 -4.298 1.00 16.10 C ATOM 220 C1' DA A 7 20.027 -6.160 -4.679 1.00 15.14 C ATOM 221 N9 DA A 7 18.758 -6.005 -3.952 1.00 13.99 N ATOM 222 C8 DA A 7 18.323 -6.659 -2.816 1.00 15.44 C ATOM 223 N7 DA A 7 17.112 -6.324 -2.444 1.00 13.98 N ATOM 224 C5 DA A 7 16.730 -5.368 -3.374 1.00 13.78 C ATOM 225 C6 DA A 7 15.555 -4.619 -3.528 1.00 14.88 C ATOM 226 N6 DA A 7 14.487 -4.727 -2.723 1.00 16.33 N ATOM 227 N1 DA A 7 15.505 -3.742 -4.554 1.00 15.55 N ATOM 228 C2 DA A 7 16.559 -3.641 -5.371 1.00 15.77 C ATOM 229 N3 DA A 7 17.716 -4.297 -5.335 1.00 15.07 N ATOM 230 C4 DA A 7 17.737 -5.155 -4.303 1.00 13.66 C ATOM 231 H5' DA A 7 22.264 -9.338 -3.451 1.00 15.79 H ATOM 232 H5'' DA A 7 23.278 -8.226 -2.505 1.00 18.00 H ATOM 233 H4' DA A 7 22.667 -7.272 -4.643 1.00 12.47 H ATOM 234 H3' DA A 7 21.447 -5.854 -2.271 1.00 17.33 H ATOM 235 H2' DA A 7 20.646 -4.218 -3.880 1.00 15.56 H ATOM 236 H2'' DA A 7 21.699 -4.814 -5.151 1.00 17.94 H ATOM 237 H1' DA A 7 19.821 -6.145 -5.754 1.00 16.66 H ATOM 238 H8 DA A 7 18.927 -7.367 -2.271 1.00 14.48 H ATOM 239 D61A DA A 7 14.476 -5.370 -1.936 0.83 15.15 D ATOM 240 H61B DA A 7 14.476 -5.370 -1.936 0.17 15.15 H ATOM 241 D62A DA A 7 13.648 -4.205 -2.943 0.94 16.42 D ATOM 242 H62B DA A 7 13.648 -4.205 -2.943 0.06 16.42 H ATOM 243 H2 DA A 7 16.453 -2.924 -6.186 1.00 14.68 H ATOM 244 P DC A 8 23.720 -4.375 -2.024 1.00 18.20 P ATOM 245 OP1 DC A 8 25.198 -4.247 -2.173 1.00 20.12 O ATOM 246 OP2 DC A 8 23.159 -4.794 -0.719 1.00 21.65 O ATOM 247 O5' DC A 8 23.045 -2.995 -2.433 1.00 17.76 O ATOM 248 C5' DC A 8 23.350 -2.359 -3.676 1.00 19.43 C ATOM 249 C4' DC A 8 22.447 -1.163 -3.869 1.00 20.17 C ATOM 250 O4' DC A 8 21.101 -1.658 -4.019 1.00 21.12 O ATOM 251 C3' DC A 8 22.412 -0.182 -2.694 1.00 23.38 C ATOM 252 O3' DC A 8 23.175 0.975 -2.978 1.00 26.34 O ATOM 253 C2' DC A 8 20.956 0.244 -2.587 1.00 24.19 C ATOM 254 C1' DC A 8 20.176 -0.747 -3.456 1.00 21.63 C ATOM 255 N1 DC A 8 19.167 -1.517 -2.699 1.00 18.99 N ATOM 256 C2 DC A 8 17.821 -1.205 -2.878 1.00 16.93 C ATOM 257 O2 DC A 8 17.518 -0.339 -3.705 1.00 18.12 O ATOM 258 N3 DC A 8 16.888 -1.849 -2.146 1.00 15.92 N ATOM 259 C4 DC A 8 17.256 -2.780 -1.265 1.00 15.59 C ATOM 260 N4 DC A 8 16.301 -3.348 -0.524 1.00 17.23 N ATOM 261 C5 DC A 8 18.615 -3.156 -1.092 1.00 16.46 C ATOM 262 C6 DC A 8 19.533 -2.500 -1.816 1.00 17.28 C ATOM 263 H5' DC A 8 23.198 -3.057 -4.496 1.00 18.66 H ATOM 264 H5'' DC A 8 24.391 -2.031 -3.676 1.00 18.32 H ATOM 265 H4' DC A 8 22.803 -0.605 -4.739 1.00 20.56 H ATOM 266 H3' DC A 8 22.781 -0.639 -1.772 1.00 24.55 H ATOM 267 DO3'A DC A 8 22.747 1.410 -3.723 0.96 27.09 D ATOM 268 HO3'B DC A 8 22.747 1.410 -3.723 0.04 27.09 H ATOM 269 H2' DC A 8 20.620 0.235 -1.548 1.00 23.77 H ATOM 270 H2'' DC A 8 20.825 1.266 -2.950 1.00 25.66 H ATOM 271 H1' DC A 8 19.676 -0.234 -4.282 1.00 21.58 H ATOM 272 D41A DC A 8 16.540 -4.046 0.164 0.79 18.74 D ATOM 273 H41B DC A 8 16.540 -4.046 0.164 0.21 18.74 H ATOM 274 D42 DC A 8 15.331 -3.083 -0.667 1.00 18.80 D ATOM 275 H5 DC A 8 18.900 -3.951 -0.402 1.00 16.90 H ATOM 276 H6 DC A 8 20.588 -2.746 -1.687 1.00 17.53 H TER 277 DC A 8 HETATM 278 MG MG A 101 5.408 -8.844 -5.008 1.00 34.73 MG HETATM 279 MG MG A 102 19.331 -8.631 1.713 1.00 27.10 MG HETATM 280 O DOD A 201 11.518 -16.148 4.013 1.00 39.92 O HETATM 281 D1 DOD A 201 12.453 -16.335 3.928 1.00 41.22 D HETATM 282 D2 DOD A 201 11.463 -15.192 4.011 1.00 40.62 D HETATM 283 O DOD A 202 9.066 -10.375 0.763 1.00 57.77 O HETATM 284 D1 DOD A 202 8.141 -10.601 0.670 1.00 57.56 D HETATM 285 D2 DOD A 202 9.460 -11.143 1.176 1.00 57.45 D HETATM 286 O DOD A 203 4.014 -12.444 -12.493 1.00 33.54 O HETATM 287 D1 DOD A 203 3.651 -11.648 -12.882 1.00 33.90 D HETATM 288 D2 DOD A 203 3.248 -12.944 -12.210 1.00 35.22 D HETATM 289 O DOD A 204 0.480 -6.164 -8.827 1.00 38.54 O HETATM 290 D1 DOD A 204 0.471 -5.210 -8.751 1.00 38.87 D HETATM 291 D2 DOD A 204 0.152 -6.474 -7.984 1.00 39.64 D HETATM 292 O DOD A 205 19.494 -2.927 -6.788 1.00 32.79 O HETATM 293 D1 DOD A 205 19.634 -3.795 -7.169 1.00 33.14 D HETATM 294 D2 DOD A 205 19.425 -3.086 -5.846 1.00 33.33 D HETATM 295 O DOD A 206 20.438 -12.966 2.144 1.00 33.20 O HETATM 296 D1 DOD A 206 19.555 -13.220 1.877 1.00 34.36 D HETATM 297 D2 DOD A 206 20.671 -13.590 2.830 1.00 33.79 D HETATM 298 O DOD A 207 4.729 -10.080 -9.581 1.00 46.42 O HETATM 299 D1 DOD A 207 4.149 -10.782 -9.286 1.00 45.65 D HETATM 300 D2 DOD A 207 5.170 -9.782 -8.786 1.00 46.25 D HETATM 301 O DOD A 208 5.920 -9.929 -3.300 1.00 25.80 O HETATM 302 D1 DOD A 208 6.466 -10.712 -3.360 1.00 27.39 D HETATM 303 D2 DOD A 208 5.491 -10.000 -2.448 1.00 26.87 D HETATM 304 O DOD A 209 6.414 -10.069 -6.562 1.00 54.33 O HETATM 305 D1 DOD A 209 5.906 -10.756 -6.995 1.00 54.00 D HETATM 306 D2 DOD A 209 7.256 -10.480 -6.367 1.00 54.77 D HETATM 307 O DOD A 210 3.896 -9.821 -5.529 1.00 28.19 O HETATM 308 D1 DOD A 210 3.022 -9.437 -5.588 1.00 29.67 D HETATM 309 D2 DOD A 210 3.751 -10.690 -5.154 1.00 30.04 D HETATM 310 O DOD A 211 26.673 -2.187 -1.121 1.00 40.60 O HETATM 311 D1 DOD A 211 26.124 -1.600 -0.600 1.00 40.85 D HETATM 312 D2 DOD A 211 26.075 -2.871 -1.419 1.00 40.16 D HETATM 313 O DOD A 212 -2.586 -4.251 -6.324 1.00 46.31 O HETATM 314 D1 DOD A 212 -3.011 -3.650 -5.713 1.00 46.67 D HETATM 315 D2 DOD A 212 -3.084 -5.065 -6.247 1.00 46.61 D HETATM 316 O DOD A 213 0.253 -16.601 -3.833 1.00 36.49 O HETATM 317 D1 DOD A 213 -0.629 -16.918 -3.636 1.00 38.13 D HETATM 318 D2 DOD A 213 0.134 -15.678 -4.056 1.00 37.56 D HETATM 319 O DOD A 214 20.905 -4.715 0.902 1.00 26.83 O HETATM 320 D1 DOD A 214 21.240 -4.835 1.790 1.00 30.02 D HETATM 321 D2 DOD A 214 21.671 -4.460 0.389 1.00 28.55 D HETATM 322 O DOD A 215 2.655 -9.861 -12.786 1.00 29.39 O HETATM 323 D1 DOD A 215 2.792 -9.260 -12.053 1.00 29.87 D HETATM 324 D2 DOD A 215 1.835 -9.570 -13.184 1.00 29.60 D HETATM 325 O DOD A 216 1.567 -8.344 -4.750 1.00 23.93 O HETATM 326 D1 DOD A 216 0.979 -8.049 -5.445 1.00 23.24 D HETATM 327 D2 DOD A 216 1.128 -8.085 -3.938 1.00 24.34 D HETATM 328 O DOD A 217 15.858 -7.300 -0.105 1.00 29.83 O HETATM 329 D1 DOD A 217 16.164 -7.157 -1.001 1.00 30.84 D HETATM 330 D2 DOD A 217 14.903 -7.277 -0.171 1.00 30.67 D HETATM 331 O DOD A 218 19.226 -6.830 0.738 1.00 26.46 O HETATM 332 D1 DOD A 218 19.853 -6.147 0.501 1.00 27.33 D HETATM 333 D2 DOD A 218 18.385 -6.376 0.791 1.00 25.83 D HETATM 334 O DOD A 219 4.888 -17.132 -1.412 1.00 36.47 O HETATM 335 D1 DOD A 219 4.736 -16.720 -2.262 1.00 36.43 D HETATM 336 D2 DOD A 219 5.739 -16.797 -1.132 1.00 36.57 D HETATM 337 O DOD A 220 16.938 -5.525 1.270 1.00 20.36 O HETATM 338 D1 DOD A 220 16.270 -6.193 1.116 1.00 24.16 D HETATM 339 D2 DOD A 220 16.767 -5.213 2.159 1.00 23.07 D HETATM 340 O DOD A 221 3.807 -9.419 -1.472 1.00 42.61 O HETATM 341 D1 DOD A 221 3.606 -9.042 -2.329 1.00 43.40 D HETATM 342 D2 DOD A 221 3.145 -10.099 -1.348 1.00 42.21 D HETATM 343 O DOD A 222 17.837 -16.460 0.844 1.00 40.51 O HETATM 344 D1 DOD A 222 17.136 -15.813 0.911 1.00 40.28 D HETATM 345 D2 DOD A 222 18.468 -16.069 0.239 1.00 39.58 D HETATM 346 O DOD A 223 -0.356 -6.798 -13.544 0.50 30.34 O HETATM 347 D1 DOD A 223 -0.796 -5.975 -13.329 0.50 29.56 D HETATM 348 D2 DOD A 223 0.053 -7.071 -12.723 0.50 29.72 D HETATM 349 O DOD A 224 17.494 -9.371 1.023 1.00 30.31 O HETATM 350 D1 DOD A 224 17.264 -10.237 1.361 1.00 30.49 D HETATM 351 D2 DOD A 224 16.755 -8.813 1.268 1.00 31.76 D HETATM 352 O DOD A 225 11.894 -7.938 -0.798 1.00 33.34 O HETATM 353 D1 DOD A 225 10.953 -8.097 -0.869 1.00 32.54 D HETATM 354 D2 DOD A 225 12.129 -8.271 0.068 1.00 31.28 D HETATM 355 O DOD A 226 19.618 -10.491 2.856 1.00 34.31 O HETATM 356 D1 DOD A 226 19.177 -11.188 2.370 1.00 37.41 D HETATM 357 D2 DOD A 226 19.201 -10.499 3.718 1.00 35.69 D HETATM 358 O DOD A 227 0.530 -5.456 -4.303 1.00 52.28 O HETATM 359 D1 DOD A 227 0.678 -5.258 -5.228 1.00 51.42 D HETATM 360 D2 DOD A 227 -0.389 -5.236 -4.154 1.00 52.45 D HETATM 361 O DOD A 228 12.459 -9.943 1.436 1.00 42.10 O HETATM 362 D1 DOD A 228 12.658 -10.878 1.388 1.00 41.84 D HETATM 363 D2 DOD A 228 11.548 -9.906 1.728 1.00 42.64 D HETATM 364 O DOD A 229 21.298 -8.119 2.788 1.00 33.25 O HETATM 365 D1 DOD A 229 21.346 -7.213 3.094 1.00 32.48 D HETATM 366 D2 DOD A 229 22.076 -8.230 2.241 1.00 33.58 D HETATM 367 O DOD A 230 26.254 0.446 -2.825 1.00 29.67 O HETATM 368 D1 DOD A 230 25.898 -0.285 -2.319 1.00 29.98 D HETATM 369 D2 DOD A 230 25.923 1.227 -2.382 1.00 27.82 D HETATM 370 O DOD A 231 13.561 -6.213 0.036 1.00 42.31 O HETATM 371 D1 DOD A 231 13.325 -5.315 0.270 1.00 41.23 D HETATM 372 D2 DOD A 231 12.757 -6.587 -0.323 1.00 42.90 D HETATM 373 O DOD A 232 8.202 -8.703 -1.719 1.00 36.57 O HETATM 374 D1 DOD A 232 7.448 -9.251 -1.936 1.00 37.01 D HETATM 375 D2 DOD A 232 7.917 -7.813 -1.924 1.00 36.73 D HETATM 376 O DOD A 233 4.153 -7.756 0.731 1.00 54.88 O HETATM 377 D1 DOD A 233 4.287 -6.886 0.355 1.00 55.08 D HETATM 378 D2 DOD A 233 3.529 -8.178 0.141 1.00 54.46 D HETATM 379 O DOD A 234 18.250 2.972 -3.027 1.00 31.28 O HETATM 380 D1 DOD A 234 18.130 2.283 -3.679 1.00 32.22 D HETATM 381 D2 DOD A 234 18.970 2.660 -2.479 1.00 28.49 D HETATM 382 O DOD A 235 7.283 -7.632 -4.809 1.00 60.82 O HETATM 383 D1 DOD A 235 7.376 -6.708 -5.043 1.00 61.23 D HETATM 384 D2 DOD A 235 8.181 -7.943 -4.698 1.00 61.45 D HETATM 385 O DOD A 236 28.834 -2.405 -2.518 1.00 36.99 O HETATM 386 D1 DOD A 236 28.724 -3.355 -2.542 1.00 35.90 D HETATM 387 D2 DOD A 236 28.078 -2.089 -2.023 1.00 37.94 D HETATM 388 O DOD A 237 4.345 -7.372 -4.143 1.00 47.25 O HETATM 389 D1 DOD A 237 4.426 -6.586 -4.685 1.00 48.08 D HETATM 390 D2 DOD A 237 3.442 -7.354 -3.825 1.00 47.49 D HETATM 391 O DOD A 238 5.085 -7.775 -6.780 1.00 41.20 O HETATM 392 D1 DOD A 238 4.624 -6.958 -6.590 1.00 43.01 D HETATM 393 D2 DOD A 238 4.795 -8.015 -7.660 1.00 39.99 D HETATM 394 O DOD A 239 8.334 -5.953 0.858 1.00 58.35 O HETATM 395 D1 DOD A 239 8.510 -6.738 1.378 1.00 57.92 D HETATM 396 D2 DOD A 239 7.534 -6.162 0.374 1.00 58.03 D CONECT 115 144 CONECT 144 115 145 146 147 CONECT 145 144 CONECT 146 144 CONECT 147 144 148 CONECT 148 147 149 165 166 CONECT 149 148 150 163 167 CONECT 150 149 151 CONECT 151 150 152 160 168 CONECT 152 151 153 159 CONECT 153 152 154 155 CONECT 154 153 CONECT 155 153 156 CONECT 156 155 157 158 CONECT 157 156 CONECT 158 156 159 171 CONECT 159 152 158 172 CONECT 160 151 161 163 173 CONECT 161 160 162 CONECT 162 161 174 175 176 CONECT 163 149 160 164 177 CONECT 164 163 178 CONECT 165 148 CONECT 166 148 CONECT 167 149 CONECT 168 151 CONECT 171 158 CONECT 172 159 CONECT 173 160 CONECT 174 162 CONECT 175 162 CONECT 176 162 CONECT 177 163 CONECT 178 164 CONECT 212 279 CONECT 278 301 304 307 382 CONECT 278 388 391 CONECT 279 212 331 349 355 CONECT 279 364 CONECT 301 278 CONECT 304 278 CONECT 307 278 CONECT 331 279 CONECT 349 279 CONECT 355 279 CONECT 364 279 CONECT 382 278 CONECT 388 278 CONECT 391 278 MASTER 433 0 3 0 0 0 4 6 204 1 49 1 END