HEADER DE NOVO PROTEIN 28-OCT-18 6I1J TITLE SELECTIVE FORMATION OF TRINUCLEAR TRANSITION METAL CENTERS IN A TITLE 2 TRIMERIC HELICAL PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: A HELICAL PEPTIDE CONTAINING A TRINUCLEAR CU(II) CENTER: COMPND 3 HISAD; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS TRIMERIC COILED COIL, COPPER-BINDING PEPTIDE, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.L.BOYLE,N.S.PANNU REVDAT 3 15-MAY-24 6I1J 1 LINK REVDAT 2 18-SEP-19 6I1J 1 JRNL REVDAT 1 04-SEP-19 6I1J 0 JRNL AUTH A.L.BOYLE,M.RABE,N.S.A.CRONE,G.G.RHYS,N.SOLER,P.VOSKAMP, JRNL AUTH 2 N.S.PANNU,A.KROS JRNL TITL SELECTIVE COORDINATION OF THREE TRANSITION METAL IONS WITHIN JRNL TITL 2 A COILED-COIL PEPTIDE SCAFFOLD. JRNL REF CHEM SCI V. 10 7456 2019 JRNL REFN ISSN 2041-6520 JRNL PMID 31489168 JRNL DOI 10.1039/C9SC01165J REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 1338 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.267 REMARK 3 R VALUE (WORKING SET) : 0.266 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.400 REMARK 3 FREE R VALUE TEST SET COUNT : 139 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 87 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.6300 REMARK 3 BIN FREE R VALUE SET COUNT : 11 REMARK 3 BIN FREE R VALUE : 0.5940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 229 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 3 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 119.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.83000 REMARK 3 B22 (A**2) : 3.83000 REMARK 3 B33 (A**2) : -12.43000 REMARK 3 B12 (A**2) : 1.92000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.489 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.288 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 232 ; 0.011 ; 0.015 REMARK 3 BOND LENGTHS OTHERS (A): 237 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 309 ; 1.480 ; 1.626 REMARK 3 BOND ANGLES OTHERS (DEGREES): 551 ; 1.420 ; 1.662 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 29 ; 5.781 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 9 ;45.625 ;26.667 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 47 ;22.196 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 34 ; 0.057 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 249 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 39 ; 0.011 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 119 ;10.153 ;11.435 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 118 ;10.141 ;11.432 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 147 ;13.774 ;17.169 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 148 ;13.755 ;17.171 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 113 ;10.167 ;12.463 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 114 ;10.122 ;12.451 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 163 ;15.372 ;18.201 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6I1J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1200011429. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.34765 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 1493 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 23.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 29.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 31.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: ARCIMBOLDO, CRANK2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.09 M TRIS PH 8.5, 0.18 M LISO4, 36% REMARK 280 V/V PEG400, 5% V/V JEFFAMINE M-600, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.01750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 53.01750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.01750 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 53.01750 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 53.01750 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 53.01750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 30.51700 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 15.25850 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 26.42850 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -133.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 30.51700 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 15.25850 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 26.42850 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 15.25850 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 26.42850 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 53.01750 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 30.51700 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 53.01750 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 53.01750 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 31 REMARK 465 GLY A 32 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN A 8 NE2 GLN A 8 11555 2.10 REMARK 500 OE2 GLU A 9 OE2 GLU A 9 10665 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 101 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 2 OE1 REMARK 620 2 HIS A 13 NE2 51.5 REMARK 620 3 GLU A 16 OE1 35.6 15.9 REMARK 620 4 GLU A 16 OE2 39.4 13.0 4.9 REMARK 620 5 HIS A 17 NE2 54.5 4.1 19.2 16.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 101 DBREF 6I1J A 1 32 PDB 6I1J 6I1J 1 32 SEQRES 1 A 32 GLY GLU ILE ALA ALA ILE LYS GLN GLU ILE ALA ALA HIS SEQRES 2 A 32 LYS LYS GLU HIS ALA ALA ILE LYS TRP GLU ILE ALA ALA SEQRES 3 A 32 ILE LYS GLN GLY TYR GLY HET CU A 101 1 HETNAM CU COPPER (II) ION FORMUL 2 CU CU 2+ FORMUL 3 HOH *3(H2 O) HELIX 1 AA1 GLY A 1 GLN A 29 1 29 LINK OE1 GLU A 2 CU CU A 101 1555 12555 2.21 LINK NE2 HIS A 13 CU CU A 101 1555 1555 1.93 LINK OE1 GLU A 16 CU CU A 101 1555 3665 2.32 LINK OE2 GLU A 16 CU CU A 101 1555 3665 2.21 LINK NE2 HIS A 17 CU CU A 101 1555 1555 2.07 SITE 1 AC1 4 GLU A 2 HIS A 13 GLU A 16 HIS A 17 CRYST1 30.517 30.517 106.035 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.032769 0.018919 0.000000 0.00000 SCALE2 0.000000 0.037838 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009431 0.00000 ATOM 1 N GLY A 1 3.062 12.276 34.841 1.00117.24 N ATOM 2 CA GLY A 1 3.947 13.375 34.346 1.00128.90 C ATOM 3 C GLY A 1 4.997 12.854 33.374 1.00138.82 C ATOM 4 O GLY A 1 4.847 12.975 32.152 1.00155.01 O ATOM 5 N GLU A 2 6.045 12.242 33.938 1.00131.85 N ATOM 6 CA GLU A 2 7.216 11.716 33.216 1.00126.52 C ATOM 7 C GLU A 2 6.843 10.462 32.405 1.00132.37 C ATOM 8 O GLU A 2 7.023 10.414 31.199 1.00128.86 O ATOM 9 CB GLU A 2 8.323 11.445 34.239 1.00116.38 C ATOM 10 CG GLU A 2 9.521 10.698 33.697 1.00124.24 C ATOM 11 CD GLU A 2 10.809 10.919 34.477 1.00137.41 C ATOM 12 OE1 GLU A 2 10.925 10.429 35.626 1.00146.66 O ATOM 13 OE2 GLU A 2 11.698 11.584 33.927 1.00155.96 O ATOM 14 N ILE A 3 6.323 9.428 33.062 1.00130.26 N ATOM 15 CA ILE A 3 5.997 8.214 32.331 1.00124.51 C ATOM 16 C ILE A 3 5.055 8.600 31.180 1.00119.72 C ATOM 17 O ILE A 3 5.159 8.047 30.113 1.00138.35 O ATOM 18 CB ILE A 3 5.406 7.096 33.228 1.00129.02 C ATOM 19 CG1 ILE A 3 5.824 7.195 34.702 1.00125.94 C ATOM 20 CG2 ILE A 3 5.734 5.721 32.650 1.00117.32 C ATOM 21 CD1 ILE A 3 7.306 7.071 34.940 1.00119.34 C ATOM 22 N ALA A 4 4.178 9.588 31.398 1.00116.67 N ATOM 23 CA ALA A 4 3.193 10.024 30.404 1.00128.73 C ATOM 24 C ALA A 4 3.876 10.701 29.216 1.00141.86 C ATOM 25 O ALA A 4 3.553 10.412 28.059 1.00160.56 O ATOM 26 CB ALA A 4 2.201 10.970 31.023 1.00133.12 C ATOM 27 N ALA A 5 4.795 11.623 29.517 1.00146.82 N ATOM 28 CA ALA A 5 5.511 12.360 28.481 1.00156.20 C ATOM 29 C ALA A 5 6.477 11.427 27.733 1.00143.37 C ATOM 30 O ALA A 5 6.916 11.774 26.652 1.00153.14 O ATOM 31 CB ALA A 5 6.226 13.557 29.069 1.00152.34 C ATOM 32 N ILE A 6 6.818 10.266 28.312 1.00122.37 N ATOM 33 CA ILE A 6 7.618 9.275 27.598 1.00106.70 C ATOM 34 C ILE A 6 6.690 8.550 26.626 1.00113.72 C ATOM 35 O ILE A 6 7.096 8.181 25.548 1.00118.86 O ATOM 36 CB ILE A 6 8.332 8.267 28.526 1.00114.77 C ATOM 37 CG1 ILE A 6 9.306 8.928 29.506 1.00117.42 C ATOM 38 CG2 ILE A 6 9.042 7.200 27.705 1.00124.68 C ATOM 39 CD1 ILE A 6 10.099 7.955 30.358 1.00108.23 C ATOM 40 N LYS A 7 5.445 8.325 27.046 1.00135.97 N ATOM 41 CA LYS A 7 4.481 7.647 26.212 1.00127.32 C ATOM 42 C LYS A 7 4.097 8.603 25.083 1.00117.97 C ATOM 43 O LYS A 7 3.963 8.166 23.946 1.00143.42 O ATOM 44 CB LYS A 7 3.291 7.146 27.042 1.00154.38 C ATOM 45 CG LYS A 7 3.568 5.890 27.873 1.00159.13 C ATOM 46 CD LYS A 7 2.396 5.397 28.719 1.00162.19 C ATOM 47 CE LYS A 7 2.839 4.526 29.879 1.00166.97 C ATOM 48 NZ LYS A 7 1.832 3.495 30.235 1.00170.68 N ATOM 49 N GLN A 8 3.995 9.903 25.391 1.00118.46 N ATOM 50 CA GLN A 8 3.659 10.931 24.384 1.00140.54 C ATOM 51 C GLN A 8 4.773 10.971 23.317 1.00150.48 C ATOM 52 O GLN A 8 4.533 11.235 22.136 1.00136.97 O ATOM 53 CB GLN A 8 3.440 12.283 25.077 1.00153.72 C ATOM 54 CG GLN A 8 2.406 13.182 24.401 1.00179.16 C ATOM 55 CD GLN A 8 1.004 12.615 24.414 1.00179.55 C ATOM 56 OE1 GLN A 8 0.570 11.977 23.458 1.00177.23 O ATOM 57 NE2 GLN A 8 0.274 12.844 25.497 1.00170.35 N ATOM 58 N GLU A 9 5.994 10.655 23.762 1.00152.05 N ATOM 59 CA GLU A 9 7.224 10.605 22.961 1.00129.29 C ATOM 60 C GLU A 9 7.244 9.356 22.061 1.00123.08 C ATOM 61 O GLU A 9 7.532 9.483 20.877 1.00122.52 O ATOM 62 CB GLU A 9 8.400 10.709 23.938 1.00138.26 C ATOM 63 CG GLU A 9 9.744 10.231 23.427 1.00146.13 C ATOM 64 CD GLU A 9 10.824 10.261 24.501 1.00155.03 C ATOM 65 OE1 GLU A 9 11.861 9.581 24.308 1.00165.46 O ATOM 66 OE2 GLU A 9 10.630 10.969 25.532 1.00137.96 O ATOM 67 N ILE A 10 6.948 8.168 22.615 1.00114.80 N ATOM 68 CA ILE A 10 6.822 6.918 21.836 1.00110.00 C ATOM 69 C ILE A 10 5.768 7.094 20.740 1.00117.20 C ATOM 70 O ILE A 10 5.844 6.464 19.676 1.00114.45 O ATOM 71 CB ILE A 10 6.452 5.727 22.729 1.00116.28 C ATOM 72 CG1 ILE A 10 7.655 5.259 23.550 1.00127.96 C ATOM 73 CG2 ILE A 10 5.864 4.592 21.900 1.00120.10 C ATOM 74 CD1 ILE A 10 7.284 4.691 24.903 1.00131.77 C ATOM 75 N ALA A 11 4.770 7.927 21.033 1.00107.32 N ATOM 76 CA ALA A 11 3.734 8.259 20.077 1.00131.44 C ATOM 77 C ALA A 11 4.381 8.851 18.810 1.00135.51 C ATOM 78 O ALA A 11 4.277 8.302 17.701 1.00135.96 O ATOM 79 CB ALA A 11 2.725 9.202 20.711 1.00119.32 C ATOM 80 N ALA A 12 5.092 9.961 18.997 1.00132.02 N ATOM 81 CA ALA A 12 5.612 10.755 17.903 1.00140.73 C ATOM 82 C ALA A 12 6.732 10.018 17.154 1.00121.57 C ATOM 83 O ALA A 12 7.014 10.363 16.021 1.00120.00 O ATOM 84 CB ALA A 12 6.093 12.080 18.443 1.00156.34 C ATOM 85 N HIS A 13 7.385 9.054 17.812 1.00109.52 N ATOM 86 CA HIS A 13 8.505 8.304 17.247 1.00109.20 C ATOM 87 C HIS A 13 7.967 7.196 16.352 1.00120.86 C ATOM 88 O HIS A 13 8.645 6.807 15.403 1.00103.79 O ATOM 89 CB HIS A 13 9.382 7.675 18.336 1.00 99.66 C ATOM 90 CG HIS A 13 10.736 7.239 17.870 1.00106.43 C ATOM 91 ND1 HIS A 13 11.785 8.125 17.709 1.00123.41 N ATOM 92 CD2 HIS A 13 11.234 6.020 17.578 1.00105.78 C ATOM 93 CE1 HIS A 13 12.866 7.471 17.330 1.00130.58 C ATOM 94 NE2 HIS A 13 12.551 6.176 17.246 1.00102.20 N ATOM 95 N LYS A 14 6.785 6.674 16.716 1.00118.03 N ATOM 96 CA LYS A 14 6.072 5.697 15.914 1.00114.80 C ATOM 97 C LYS A 14 5.666 6.398 14.605 1.00119.41 C ATOM 98 O LYS A 14 5.869 5.873 13.491 1.00103.69 O ATOM 99 CB LYS A 14 4.902 5.103 16.717 1.00117.15 C ATOM 100 CG LYS A 14 5.219 3.800 17.447 1.00130.67 C ATOM 101 CD LYS A 14 4.007 2.958 17.886 1.00140.99 C ATOM 102 CE LYS A 14 4.291 1.459 17.889 1.00150.11 C ATOM 103 NZ LYS A 14 3.574 0.714 18.957 1.00140.56 N ATOM 104 N LYS A 15 5.131 7.617 14.738 1.00104.94 N ATOM 105 CA LYS A 15 4.726 8.378 13.591 1.00113.66 C ATOM 106 C LYS A 15 5.944 8.544 12.680 1.00114.78 C ATOM 107 O LYS A 15 6.006 7.956 11.597 1.00107.33 O ATOM 108 CB LYS A 15 4.151 9.732 14.020 1.00127.61 C ATOM 109 CG LYS A 15 2.653 9.749 14.307 1.00136.30 C ATOM 110 CD LYS A 15 1.927 10.867 13.565 1.00145.69 C ATOM 111 CE LYS A 15 0.416 10.755 13.608 1.00156.72 C ATOM 112 NZ LYS A 15 -0.236 11.973 13.069 1.00160.10 N ATOM 113 N GLU A 16 6.919 9.299 13.201 1.00112.79 N ATOM 114 CA GLU A 16 8.205 9.598 12.585 1.00 98.64 C ATOM 115 C GLU A 16 8.733 8.358 11.854 1.00 99.29 C ATOM 116 O GLU A 16 9.184 8.504 10.738 1.00 99.07 O ATOM 117 CB GLU A 16 9.168 10.125 13.649 1.00 99.30 C ATOM 118 CG GLU A 16 10.611 10.246 13.191 1.00113.34 C ATOM 119 CD GLU A 16 11.513 11.101 14.074 1.00124.53 C ATOM 120 OE1 GLU A 16 10.996 11.838 14.974 1.00125.51 O ATOM 121 OE2 GLU A 16 12.740 11.048 13.851 1.00123.11 O ATOM 122 N HIS A 17 8.610 7.157 12.450 1.00 96.28 N ATOM 123 CA HIS A 17 9.019 5.891 11.788 1.00 96.95 C ATOM 124 C HIS A 17 8.190 5.722 10.500 1.00 94.57 C ATOM 125 O HIS A 17 8.727 5.502 9.389 1.00 89.19 O ATOM 126 CB HIS A 17 8.936 4.670 12.746 1.00104.52 C ATOM 127 CG HIS A 17 10.145 4.369 13.596 1.00111.27 C ATOM 128 ND1 HIS A 17 10.375 3.111 14.135 1.00132.78 N ATOM 129 CD2 HIS A 17 11.180 5.125 14.030 1.00119.78 C ATOM 130 CE1 HIS A 17 11.480 3.114 14.860 1.00122.24 C ATOM 131 NE2 HIS A 17 11.989 4.331 14.816 1.00112.46 N ATOM 132 N ALA A 18 6.870 5.886 10.621 1.00106.24 N ATOM 133 CA ALA A 18 5.957 5.619 9.491 1.00112.95 C ATOM 134 C ALA A 18 6.186 6.629 8.352 1.00111.70 C ATOM 135 O ALA A 18 6.219 6.262 7.175 1.00109.77 O ATOM 136 CB ALA A 18 4.536 5.655 9.986 1.00116.05 C ATOM 137 N ALA A 19 6.338 7.900 8.738 1.00 96.88 N ATOM 138 CA ALA A 19 6.541 9.014 7.840 1.00 92.25 C ATOM 139 C ALA A 19 7.800 8.822 7.007 1.00 89.49 C ATOM 140 O ALA A 19 7.755 9.129 5.840 1.00 98.06 O ATOM 141 CB ALA A 19 6.654 10.289 8.618 1.00 97.37 C ATOM 142 N ILE A 20 8.898 8.347 7.612 1.00 86.19 N ATOM 143 CA ILE A 20 10.135 8.150 6.860 1.00 87.60 C ATOM 144 C ILE A 20 9.963 6.993 5.866 1.00 89.78 C ATOM 145 O ILE A 20 10.483 7.052 4.734 1.00 95.94 O ATOM 146 CB ILE A 20 11.363 7.933 7.765 1.00103.51 C ATOM 147 CG1 ILE A 20 11.552 9.074 8.771 1.00118.61 C ATOM 148 CG2 ILE A 20 12.612 7.747 6.906 1.00108.41 C ATOM 149 CD1 ILE A 20 12.894 9.070 9.500 1.00127.25 C ATOM 150 N LYS A 21 9.235 5.942 6.268 1.00 97.96 N ATOM 151 CA LYS A 21 9.002 4.772 5.370 1.00103.84 C ATOM 152 C LYS A 21 8.139 5.206 4.162 1.00 98.87 C ATOM 153 O LYS A 21 8.416 4.852 3.020 1.00 96.39 O ATOM 154 CB LYS A 21 8.397 3.594 6.152 1.00116.88 C ATOM 155 CG LYS A 21 9.035 3.305 7.512 1.00135.33 C ATOM 156 CD LYS A 21 9.000 1.848 7.977 1.00151.18 C ATOM 157 CE LYS A 21 9.944 1.557 9.131 1.00146.56 C ATOM 158 NZ LYS A 21 10.132 0.102 9.341 1.00155.51 N ATOM 159 N TRP A 22 7.091 5.995 4.422 1.00104.79 N ATOM 160 CA TRP A 22 6.268 6.601 3.382 1.00 99.09 C ATOM 161 C TRP A 22 7.082 7.502 2.445 1.00 93.29 C ATOM 162 O TRP A 22 6.933 7.413 1.263 1.00102.38 O ATOM 163 CB TRP A 22 5.086 7.332 4.019 1.00101.30 C ATOM 164 CG TRP A 22 3.995 6.350 4.283 1.00118.92 C ATOM 165 CD1 TRP A 22 3.740 5.688 5.445 1.00126.31 C ATOM 166 CD2 TRP A 22 3.106 5.801 3.296 1.00135.41 C ATOM 167 NE1 TRP A 22 2.714 4.805 5.265 1.00131.36 N ATOM 168 CE2 TRP A 22 2.306 4.848 3.958 1.00130.84 C ATOM 169 CE3 TRP A 22 2.900 6.034 1.929 1.00130.42 C ATOM 170 CZ2 TRP A 22 1.311 4.130 3.299 1.00120.06 C ATOM 171 CZ3 TRP A 22 1.912 5.326 1.283 1.00124.65 C ATOM 172 CH2 TRP A 22 1.128 4.390 1.963 1.00112.26 C ATOM 173 N GLU A 23 7.957 8.350 2.982 1.00 96.40 N ATOM 174 CA GLU A 23 8.744 9.219 2.155 1.00 91.83 C ATOM 175 C GLU A 23 9.688 8.401 1.291 1.00 89.41 C ATOM 176 O GLU A 23 10.078 8.858 0.246 1.00114.97 O ATOM 177 CB GLU A 23 9.641 10.163 2.956 1.00 96.24 C ATOM 178 CG GLU A 23 8.887 11.233 3.720 1.00105.46 C ATOM 179 CD GLU A 23 8.630 12.531 2.974 1.00122.52 C ATOM 180 OE1 GLU A 23 8.658 12.529 1.702 1.00112.06 O ATOM 181 OE2 GLU A 23 8.391 13.540 3.677 1.00119.24 O ATOM 182 N ILE A 24 10.098 7.230 1.773 1.00 95.50 N ATOM 183 CA ILE A 24 11.078 6.422 1.024 1.00100.32 C ATOM 184 C ILE A 24 10.360 5.625 -0.068 1.00 95.39 C ATOM 185 O ILE A 24 10.839 5.526 -1.182 1.00103.16 O ATOM 186 CB ILE A 24 11.896 5.531 1.978 1.00105.46 C ATOM 187 CG1 ILE A 24 13.062 6.326 2.575 1.00103.97 C ATOM 188 CG2 ILE A 24 12.382 4.259 1.287 1.00100.03 C ATOM 189 CD1 ILE A 24 13.324 6.063 4.037 1.00105.02 C ATOM 190 N ALA A 25 9.211 5.051 0.275 1.00 96.17 N ATOM 191 CA ALA A 25 8.343 4.406 -0.694 1.00 95.41 C ATOM 192 C ALA A 25 8.077 5.373 -1.866 1.00101.86 C ATOM 193 O ALA A 25 8.444 5.090 -3.007 1.00112.71 O ATOM 194 CB ALA A 25 7.065 3.994 0.008 1.00103.01 C ATOM 195 N ALA A 26 7.494 6.542 -1.555 1.00 97.82 N ATOM 196 CA ALA A 26 7.093 7.585 -2.540 1.00 89.22 C ATOM 197 C ALA A 26 8.267 8.019 -3.433 1.00 88.26 C ATOM 198 O ALA A 26 8.044 8.331 -4.592 1.00101.87 O ATOM 199 CB ALA A 26 6.463 8.769 -1.838 1.00 81.99 C ATOM 200 N ILE A 27 9.513 8.015 -2.932 1.00 98.41 N ATOM 201 CA ILE A 27 10.675 8.339 -3.789 1.00 90.31 C ATOM 202 C ILE A 27 10.854 7.219 -4.823 1.00 99.12 C ATOM 203 O ILE A 27 11.087 7.491 -6.006 1.00124.43 O ATOM 204 CB ILE A 27 11.972 8.595 -2.990 1.00 98.02 C ATOM 205 CG1 ILE A 27 11.909 9.888 -2.167 1.00 98.18 C ATOM 206 CG2 ILE A 27 13.180 8.599 -3.924 1.00107.02 C ATOM 207 CD1 ILE A 27 12.760 9.861 -0.893 1.00105.94 C ATOM 208 N LYS A 28 10.727 5.969 -4.372 1.00105.89 N ATOM 209 CA LYS A 28 10.844 4.787 -5.243 1.00114.66 C ATOM 210 C LYS A 28 9.658 4.684 -6.238 1.00117.52 C ATOM 211 O LYS A 28 9.864 4.313 -7.388 1.00134.17 O ATOM 212 CB LYS A 28 11.101 3.557 -4.358 1.00105.33 C ATOM 213 CG LYS A 28 12.540 3.457 -3.839 1.00 98.30 C ATOM 214 CD LYS A 28 12.777 2.478 -2.674 1.00101.59 C ATOM 215 CE LYS A 28 14.236 2.405 -2.244 1.00107.47 C ATOM 216 NZ LYS A 28 14.426 1.761 -0.920 1.00111.67 N ATOM 217 N GLN A 29 8.431 5.053 -5.841 1.00131.67 N ATOM 218 CA GLN A 29 7.249 5.079 -6.773 1.00126.49 C ATOM 219 C GLN A 29 7.183 6.405 -7.568 1.00131.22 C ATOM 220 O GLN A 29 6.251 6.625 -8.355 1.00127.32 O ATOM 221 CB GLN A 29 5.943 4.835 -6.004 1.00133.51 C ATOM 222 CG GLN A 29 5.583 3.363 -5.819 1.00131.55 C ATOM 223 CD GLN A 29 6.370 2.676 -4.731 1.00131.26 C ATOM 224 OE1 GLN A 29 7.513 3.024 -4.463 1.00148.62 O ATOM 225 NE2 GLN A 29 5.781 1.663 -4.115 1.00134.26 N ATOM 226 N GLY A 30 8.143 7.309 -7.330 1.00122.14 N ATOM 227 CA GLY A 30 8.524 8.352 -8.273 1.00111.47 C ATOM 228 C GLY A 30 9.678 7.882 -9.140 1.00120.85 C ATOM 229 O GLY A 30 10.720 8.516 -9.181 1.00127.35 O TER 230 GLY A 30 HETATM 231 CU CU A 101 13.497 5.369 15.772 0.83101.15 CU HETATM 232 O HOH A 201 11.582 1.853 12.331 1.00 94.37 O HETATM 233 O HOH A 202 1.343 -0.505 16.654 1.00127.37 O HETATM 234 O HOH A 203 12.705 3.591 9.661 1.00 95.92 O CONECT 94 231 CONECT 131 231 CONECT 231 94 131 MASTER 352 0 1 1 0 0 1 6 233 1 3 3 END