HEADER STRUCTURAL PROTEIN 04-JAN-19 6NK4 TITLE KVQIINKKL, CRYSTAL STRUCTURE OF A TAU PROTEIN FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: MICROTUBULE-ASSOCIATED PROTEIN TAU; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: REPEAT 2 PEPTIDE (UNP RESIDUES 591-599); COMPND 5 SYNONYM: NEUROFIBRILLARY TANGLE PROTEIN, PAIRED HELICAL FILAMENT-TAU, COMPND 6 PHF-TAU; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606 KEYWDS AMYLOID, TAU, ALZHEIMER'S DISEASE, TAUOPATHY, MAPT, STRUCTURAL KEYWDS 2 PROTEIN EXPDTA ELECTRON CRYSTALLOGRAPHY AUTHOR D.S.EISENBERG,D.R.BOYER,M.R.SAWAYA REVDAT 4 11-OCT-23 6NK4 1 REMARK REVDAT 3 30-JUN-21 6NK4 1 REMARK REVDAT 2 27-JAN-21 6NK4 1 JRNL REVDAT 1 15-JAN-20 6NK4 0 JRNL AUTH C.SHIPPS,H.R.KELLY,P.J.DAHL,S.M.YI,D.VU,D.BOYER,C.GLYNN, JRNL AUTH 2 M.R.SAWAYA,D.EISENBERG,V.S.BATISTA,N.S.MALVANKAR JRNL TITL INTRINSIC ELECTRONIC CONDUCTIVITY OF INDIVIDUAL ATOMICALLY JRNL TITL 2 RESOLVED AMYLOID CRYSTALS REVEALS MICROMETER-LONG HOLE JRNL TITL 3 HOPPING VIA TYROSINES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 118 2021 JRNL REFN ESSN 1091-6490 JRNL PMID 33372136 JRNL DOI 10.1073/PNAS.2014139118 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 934 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.264 REMARK 3 R VALUE (WORKING SET) : 0.260 REMARK 3 FREE R VALUE : 0.299 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.990 REMARK 3 FREE R VALUE TEST SET COUNT : 84 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.2400 - 1.9944 0.96 850 84 0.2601 0.2991 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 75 REMARK 3 ANGLE : 1.399 98 REMARK 3 CHIRALITY : 0.114 13 REMARK 3 PLANARITY : 0.005 11 REMARK 3 DIHEDRAL : 17.503 33 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NK4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000238875. REMARK 240 REMARK 240 EXPERIMENTAL DETAILS REMARK 240 RECONSTRUCTION METHOD : CRYSTALLOGRAPHY REMARK 240 SAMPLE TYPE : 3D ARRAY REMARK 240 SPECIMEN TYPE : NULL REMARK 240 DATA ACQUISITION REMARK 240 DATE OF DATA COLLECTION : 19-JAN-17 REMARK 240 TEMPERATURE (KELVIN) : 88.0 REMARK 240 PH : NULL REMARK 240 NUMBER OF CRYSTALS USED : 1 REMARK 240 MICROSCOPE MODEL : FEI TECNAI 20 REMARK 240 DETECTOR TYPE : TVIPS TEMCAM-F416 (4K X 4K) REMARK 240 ACCELERATION VOLTAGE (KV) : 200 REMARK 240 NUMBER OF UNIQUE REFLECTIONS : 943 REMARK 240 RESOLUTION RANGE HIGH (A) : 1.994 REMARK 240 RESOLUTION RANGE LOW (A) : 90.000 REMARK 240 DATA SCALING SOFTWARE : SCALEPACK REMARK 240 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 240 DATA REDUNDANCY : 6.000 REMARK 240 IN THE HIGHEST RESOLUTION SHELL REMARK 240 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) :2.00 REMARK 240 HIGHEST RESOLUTION SHELL, RANGE LOW (A) :2.15 REMARK 240 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 240 DATA REDUNDANCY IN SHELL : 4.90 REMARK 240 R MERGE FOR SHELL (I) : 0.68100 REMARK 240 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 240 SOFTWARE USED : PHASER REMARK 240 STARTING MODEL : PDB ENTRY 5V5B REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 1.61067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 3.22133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 2.41600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 4.02667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.80533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 4.83200 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 9.66400 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 14.49600 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 19.32800 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 31.45300 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 -54.47819 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 2.41600 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 7 -1.000000 0.000000 0.000000 31.45300 REMARK 350 BIOMT2 7 0.000000 -1.000000 0.000000 -54.47819 REMARK 350 BIOMT3 7 0.000000 0.000000 1.000000 7.24800 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 8 -1.000000 0.000000 0.000000 31.45300 REMARK 350 BIOMT2 8 0.000000 -1.000000 0.000000 -54.47819 REMARK 350 BIOMT3 8 0.000000 0.000000 1.000000 12.08000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 9 -1.000000 0.000000 0.000000 31.45300 REMARK 350 BIOMT2 9 0.000000 -1.000000 0.000000 -54.47819 REMARK 350 BIOMT3 9 0.000000 0.000000 1.000000 16.91200 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 10 -1.000000 0.000000 0.000000 31.45300 REMARK 350 BIOMT2 10 0.000000 -1.000000 0.000000 -54.47819 REMARK 350 BIOMT3 10 0.000000 0.000000 1.000000 21.74400 DBREF 6NK4 A 1 9 UNP P10636 TAU_HUMAN 591 599 SEQRES 1 A 9 LYS VAL GLN ILE ILE ASN LYS LYS LEU FORMUL 2 HOH *3(H2 O) CRYST1 62.906 62.906 4.832 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015897 0.009178 0.000000 0.00000 SCALE2 0.000000 0.018356 0.000000 0.00000 SCALE3 0.000000 0.000000 0.206954 0.00000 ATOM 1 N LYS A 1 21.145 -36.884 0.577 1.00 18.51 N ATOM 2 CA LYS A 1 21.123 -35.509 1.150 1.00 14.56 C ATOM 3 C LYS A 1 19.924 -34.729 0.614 1.00 12.99 C ATOM 4 O LYS A 1 19.694 -34.728 -0.581 1.00 9.41 O ATOM 5 CB LYS A 1 22.406 -34.777 0.761 1.00 18.89 C ATOM 6 CG LYS A 1 22.700 -33.546 1.586 1.00 25.41 C ATOM 7 CD LYS A 1 23.549 -32.536 0.828 1.00 22.34 C ATOM 8 CE LYS A 1 24.847 -33.125 0.318 1.00 26.47 C ATOM 9 NZ LYS A 1 25.738 -32.034 -0.174 1.00 28.18 N ATOM 10 N VAL A 2 19.149 -34.099 1.497 1.00 8.51 N ATOM 11 CA VAL A 2 18.199 -33.054 1.075 1.00 11.73 C ATOM 12 C VAL A 2 18.736 -31.770 1.709 1.00 6.52 C ATOM 13 O VAL A 2 18.886 -31.691 2.930 1.00 11.18 O ATOM 14 CB VAL A 2 16.733 -33.310 1.509 1.00 8.47 C ATOM 15 CG1 VAL A 2 15.806 -32.270 0.893 1.00 5.03 C ATOM 16 CG2 VAL A 2 16.276 -34.705 1.114 1.00 10.70 C ATOM 17 N GLN A 3 19.053 -30.784 0.886 1.00 8.45 N ATOM 18 CA GLN A 3 19.726 -29.602 1.393 1.00 9.49 C ATOM 19 C GLN A 3 19.412 -28.344 0.635 1.00 5.09 C ATOM 20 O GLN A 3 19.318 -28.343 -0.587 1.00 4.45 O ATOM 21 CB GLN A 3 21.251 -29.849 1.366 1.00 11.82 C ATOM 22 CG GLN A 3 22.098 -28.718 1.948 1.00 12.48 C ATOM 23 CD GLN A 3 23.574 -29.018 1.805 1.00 20.08 C ATOM 24 OE1 GLN A 3 24.060 -29.273 0.695 1.00 15.36 O ATOM 25 NE2 GLN A 3 24.285 -29.043 2.919 1.00 14.80 N ATOM 26 N ILE A 4 19.296 -27.257 1.390 1.00 5.85 N ATOM 27 CA ILE A 4 19.186 -25.923 0.828 1.00 6.50 C ATOM 28 C ILE A 4 20.307 -25.128 1.419 1.00 7.06 C ATOM 29 O ILE A 4 20.463 -25.091 2.653 1.00 7.62 O ATOM 30 CB ILE A 4 17.858 -25.236 1.219 1.00 7.43 C ATOM 31 CG1 ILE A 4 16.663 -26.039 0.683 1.00 5.15 C ATOM 32 CG2 ILE A 4 17.844 -23.803 0.710 1.00 6.47 C ATOM 33 CD1 ILE A 4 15.310 -25.511 1.157 1.00 3.33 C ATOM 34 N ILE A 5 21.092 -24.520 0.547 1.00 8.84 N ATOM 35 CA ILE A 5 22.070 -23.517 0.932 1.00 10.13 C ATOM 36 C ILE A 5 21.541 -22.234 0.357 1.00 8.03 C ATOM 37 O ILE A 5 21.499 -22.049 -0.865 1.00 11.12 O ATOM 38 CB ILE A 5 23.436 -23.817 0.337 1.00 10.53 C ATOM 39 CG1 ILE A 5 23.923 -25.168 0.835 1.00 15.06 C ATOM 40 CG2 ILE A 5 24.428 -22.730 0.722 1.00 16.39 C ATOM 41 CD1 ILE A 5 24.925 -25.794 -0.095 1.00 17.23 C ATOM 42 N ASN A 6 21.115 -21.357 1.241 1.00 10.11 N ATOM 43 CA ASN A 6 20.502 -20.104 0.841 1.00 12.76 C ATOM 44 C ASN A 6 21.312 -18.975 1.454 1.00 9.09 C ATOM 45 O ASN A 6 21.573 -18.960 2.658 1.00 11.48 O ATOM 46 CB ASN A 6 19.084 -20.060 1.331 1.00 6.77 C ATOM 47 CG ASN A 6 18.278 -18.961 0.716 1.00 7.76 C ATOM 48 OD1 ASN A 6 18.246 -18.799 -0.492 1.00 9.94 O ATOM 49 ND2 ASN A 6 17.570 -18.216 1.554 1.00 8.14 N ATOM 50 N LYS A 7 21.705 -18.041 0.619 1.00 11.12 N ATOM 51 CA LYS A 7 22.493 -16.928 1.093 1.00 12.69 C ATOM 52 C LYS A 7 21.949 -15.681 0.449 1.00 11.09 C ATOM 53 O LYS A 7 21.919 -15.559 -0.780 1.00 12.72 O ATOM 54 CB LYS A 7 23.972 -17.143 0.780 1.00 17.87 C ATOM 55 CG LYS A 7 24.863 -16.146 1.511 1.00 30.37 C ATOM 56 CD LYS A 7 26.323 -16.558 1.581 1.00 41.21 C ATOM 57 CE LYS A 7 27.100 -15.594 2.476 1.00 47.29 C ATOM 58 NZ LYS A 7 28.528 -15.977 2.655 1.00 37.03 N ATOM 59 N LYS A 8 21.464 -14.781 1.286 1.00 16.96 N ATOM 60 CA LYS A 8 21.000 -13.491 0.826 1.00 21.37 C ATOM 61 C LYS A 8 21.936 -12.415 1.363 1.00 24.04 C ATOM 62 O LYS A 8 22.262 -12.395 2.548 1.00 26.40 O ATOM 63 CB LYS A 8 19.553 -13.243 1.245 1.00 21.45 C ATOM 64 CG LYS A 8 19.002 -11.955 0.648 1.00 37.01 C ATOM 65 CD LYS A 8 17.546 -11.686 0.987 1.00 44.74 C ATOM 66 CE LYS A 8 17.110 -10.359 0.387 1.00 36.45 C ATOM 67 NZ LYS A 8 15.692 -10.050 0.716 1.00 51.32 N ATOM 68 N LEU A 9 22.374 -11.539 0.462 1.00 29.22 N ATOM 69 CA LEU A 9 23.276 -10.432 0.778 1.00 39.96 C ATOM 70 C LEU A 9 22.668 -9.126 0.270 1.00 47.35 C ATOM 71 O LEU A 9 22.264 -9.047 -0.894 1.00 41.42 O ATOM 72 CB LEU A 9 24.631 -10.667 0.111 1.00 41.51 C ATOM 73 CG LEU A 9 25.501 -11.762 0.747 1.00 39.09 C ATOM 74 CD1 LEU A 9 26.149 -12.685 -0.276 1.00 39.35 C ATOM 75 CD2 LEU A 9 26.578 -11.154 1.622 1.00 37.09 C ATOM 76 OXT LEU A 9 22.566 -8.127 0.994 1.00 40.15 O TER 77 LEU A 9 HETATM 78 O HOH A 101 19.030 -15.879 -0.990 1.00 18.90 O HETATM 79 O HOH A 102 24.217 -20.011 3.547 1.00 17.03 O HETATM 80 O HOH A 103 14.656 -16.486 1.314 1.00 18.02 O MASTER 203 0 0 0 0 0 0 6 79 1 0 1 END