HEADER PROTEIN FIBRIL 15-OCT-19 6UOS TITLE MICROED STRUCTURE OF OSPYL/RCAR5 (24-29) AT 6 E-/A^2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABSCISIC ACID RECEPTOR PYL5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 24-29; COMPND 5 SYNONYM: PYR1-LIKE PROTEIN 11,OSPYL11,PYR1-LIKE PROTEIN 5,OSPYL5, COMPND 6 REGULATORY COMPONENTS OF ABA RECEPTOR 5; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ORYZA SATIVA; SOURCE 4 ORGANISM_COMMON: RICE; SOURCE 5 ORGANISM_TAXID: 4530 KEYWDS PROTOFILAMENT, PROTEIN FIBRIL EXPDTA ELECTRON CRYSTALLOGRAPHY AUTHOR M.GALLAGHER-JONES,L.S.RICHARDS,S.LEE,J.A.RODRIGUEZ REVDAT 3 13-MAR-24 6UOS 1 REMARK REVDAT 2 30-JUN-21 6UOS 1 REMARK REVDAT 1 13-MAY-20 6UOS 0 JRNL AUTH M.GALLAGHER-JONES,K.C.BUSTILLO,C.OPHUS,L.S.RICHARDS, JRNL AUTH 2 J.CISTON,S.LEE,A.M.MINOR,J.A.RODRIGUEZ JRNL TITL ATOMIC STRUCTURES DETERMINED FROM DIGITALLY DEFINED JRNL TITL 2 NANOCRYSTALLINE REGIONS JRNL REF IUCRJ V. 7 490 2020 JRNL REFN ESSN 2052-2525 JRNL DOI 10.1107/S2052252520004030 REMARK 2 REMARK 2 RESOLUTION. 0.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 1780 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.040 REMARK 3 FREE R VALUE TEST SET COUNT : 161 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 7.4180 - 0.9002 0.97 1619 161 0.2272 0.2436 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 7.29 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 7.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UOS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1000244973. REMARK 240 REMARK 240 EXPERIMENTAL DETAILS REMARK 240 RECONSTRUCTION METHOD : CRYSTALLOGRAPHY REMARK 240 SAMPLE TYPE : 3D ARRAY REMARK 240 SPECIMEN TYPE : NULL REMARK 240 DATA ACQUISITION REMARK 240 DATE OF DATA COLLECTION : 04-APR-19 REMARK 240 TEMPERATURE (KELVIN) : 100.0 REMARK 240 PH : 7.00 REMARK 240 NUMBER OF CRYSTALS USED : NULL REMARK 240 MICROSCOPE MODEL : FEI TECNAI F30 REMARK 240 DETECTOR TYPE : TVIPS TEMCAM-F416 (4K X 4K) REMARK 240 ACCELERATION VOLTAGE (KV) : 300 REMARK 240 NUMBER OF UNIQUE REFLECTIONS : 1792 REMARK 240 RESOLUTION RANGE HIGH (A) : 0.900 REMARK 240 RESOLUTION RANGE LOW (A) : 7.418 REMARK 240 DATA SCALING SOFTWARE : XSCALE REMARK 240 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 240 DATA REDUNDANCY : 9.274 REMARK 240 IN THE HIGHEST RESOLUTION SHELL REMARK 240 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) :0.90 REMARK 240 HIGHEST RESOLUTION SHELL, RANGE LOW (A) :1.00 REMARK 240 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 240 DATA REDUNDANCY IN SHELL : 9.96 REMARK 240 R MERGE FOR SHELL (I) : 0.66600 REMARK 240 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 240 SOFTWARE USED : NULL REMARK 240 STARTING MODEL : NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 2.36000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 19.69500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 5.64000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 19.69500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 2.36000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 5.64000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 DBREF 6UOS A 24 29 UNP Q6I5C3 PYL5_ORYSJ 24 29 SEQRES 1 A 6 ALA VAL ALA ALA GLY ALA CRYST1 4.720 11.280 39.390 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.211864 0.000000 0.000000 0.00000 SCALE2 0.000000 0.088652 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025387 0.00000 ATOM 1 N ALA A 24 1.427 8.598 17.976 1.00 8.68 N ANISOU 1 N ALA A 24 1153 1517 627 217 -272 -275 N ATOM 2 CA ALA A 24 1.007 9.120 16.640 1.00 5.71 C ANISOU 2 CA ALA A 24 375 1256 539 116 -32 -323 C ATOM 3 C ALA A 24 1.652 8.323 15.539 1.00 4.74 C ANISOU 3 C ALA A 24 383 974 445 127 -19 -213 C ATOM 4 O ALA A 24 2.866 8.165 15.493 1.00 5.16 O ANISOU 4 O ALA A 24 423 1097 441 60 -74 -215 O ATOM 5 CB ALA A 24 1.386 10.523 16.496 1.00 9.30 C ANISOU 5 CB ALA A 24 1986 849 697 376 276 -70 C ATOM 6 H1 ALA A 24 0.828 8.836 18.589 1.00 10.39 H ATOM 7 H2 ALA A 24 1.482 7.711 17.943 1.00 10.39 H ATOM 8 H3 ALA A 24 2.221 8.938 18.190 1.00 10.39 H ATOM 9 HA ALA A 24 0.042 9.050 16.568 1.00 6.83 H ATOM 10 HB1 ALA A 24 1.155 10.822 15.603 1.00 11.13 H ATOM 11 HB2 ALA A 24 0.908 11.049 17.155 1.00 11.13 H ATOM 12 HB3 ALA A 24 2.343 10.607 16.635 1.00 11.13 H ATOM 13 N VAL A 25 0.831 7.845 14.622 1.00 3.07 N ANISOU 13 N VAL A 25 163 571 434 17 -14 -73 N ATOM 14 CA VAL A 25 1.311 7.043 13.528 1.00 3.80 C ANISOU 14 CA VAL A 25 356 703 386 -74 29 -9 C ATOM 15 C VAL A 25 0.669 7.569 12.276 1.00 2.18 C ANISOU 15 C VAL A 25 165 357 305 -23 -23 67 C ATOM 16 O VAL A 25 -0.547 7.707 12.215 1.00 2.98 O ANISOU 16 O VAL A 25 320 499 314 26 23 37 O ATOM 17 CB VAL A 25 0.952 5.570 13.724 1.00 4.39 C ANISOU 17 CB VAL A 25 549 558 560 -269 -22 71 C ATOM 18 CG1 VAL A 25 1.515 4.763 12.616 1.00 4.96 C ANISOU 18 CG1 VAL A 25 624 689 571 17 -67 -1 C ATOM 19 CG2 VAL A 25 1.458 5.109 15.048 1.00 6.89 C ANISOU 19 CG2 VAL A 25 1177 765 674 -299 159 22 C ATOM 20 H VAL A 25 -0.019 7.977 14.617 1.00 3.67 H ATOM 21 HA VAL A 25 2.275 7.120 13.451 1.00 4.54 H ATOM 22 HB VAL A 25 -0.011 5.454 13.712 1.00 5.24 H ATOM 23 HG11 VAL A 25 1.366 3.823 12.803 1.00 5.93 H ATOM 24 HG12 VAL A 25 1.072 5.009 11.789 1.00 5.93 H ATOM 25 HG13 VAL A 25 2.466 4.939 12.548 1.00 5.93 H ATOM 26 HG21 VAL A 25 1.406 4.141 15.086 1.00 8.24 H ATOM 27 HG22 VAL A 25 2.379 5.396 15.151 1.00 8.24 H ATOM 28 HG23 VAL A 25 0.910 5.497 15.748 1.00 8.24 H ATOM 29 N ALA A 26 1.479 7.864 11.290 1.00 2.74 N ANISOU 29 N ALA A 26 257 482 304 16 46 41 N ATOM 30 CA ALA A 26 0.959 8.370 10.039 1.00 3.84 C ANISOU 30 CA ALA A 26 281 895 282 123 -7 -113 C ATOM 31 C ALA A 26 1.643 7.638 8.913 1.00 2.01 C ANISOU 31 C ALA A 26 200 353 212 28 -102 -17 C ATOM 32 O ALA A 26 2.857 7.477 8.923 1.00 2.86 O ANISOU 32 O ALA A 26 206 577 302 -20 83 -49 O ATOM 33 CB ALA A 26 1.194 9.867 9.911 1.00 3.98 C ANISOU 33 CB ALA A 26 594 665 255 -20 -28 -37 C ATOM 34 H ALA A 26 2.335 7.780 11.318 1.00 3.27 H ATOM 35 HA ALA A 26 0.004 8.210 9.985 1.00 4.58 H ATOM 36 HB1 ALA A 26 0.789 10.181 9.088 1.00 4.76 H ATOM 37 HB2 ALA A 26 0.790 10.316 10.671 1.00 4.76 H ATOM 38 HB3 ALA A 26 2.148 10.037 9.897 1.00 4.76 H ATOM 39 N ALA A 27 0.863 7.200 7.966 1.00 3.06 N ANISOU 39 N ALA A 27 276 646 239 5 -41 -62 N ATOM 40 CA ALA A 27 1.417 6.549 6.810 1.00 2.91 C ANISOU 40 CA ALA A 27 218 601 288 134 -32 -59 C ATOM 41 C ALA A 27 0.730 7.111 5.593 1.00 4.34 C ANISOU 41 C ALA A 27 1023 299 328 129 -71 0 C ATOM 42 O ALA A 27 -0.490 7.246 5.562 1.00 2.66 O ANISOU 42 O ALA A 27 182 463 368 48 -28 5 O ATOM 43 CB ALA A 27 1.136 5.076 6.842 1.00 3.17 C ANISOU 43 CB ALA A 27 459 418 328 173 88 -3 C ATOM 44 H ALA A 27 0.005 7.267 7.968 1.00 3.64 H ATOM 45 HA ALA A 27 2.375 6.698 6.769 1.00 3.47 H ATOM 46 HB1 ALA A 27 1.436 4.679 6.009 1.00 3.78 H ATOM 47 HB2 ALA A 27 1.613 4.680 7.588 1.00 3.78 H ATOM 48 HB3 ALA A 27 0.182 4.939 6.949 1.00 3.78 H ATOM 49 N GLY A 28 1.523 7.382 4.581 1.00 3.37 N ANISOU 49 N GLY A 28 260 608 412 -95 -66 177 N ATOM 50 CA GLY A 28 0.952 7.646 3.286 1.00 5.58 C ANISOU 50 CA GLY A 28 640 937 542 87 -97 344 C ATOM 51 C GLY A 28 1.709 8.726 2.591 1.00 6.15 C ANISOU 51 C GLY A 28 380 1276 679 -61 -5 364 C ATOM 52 O GLY A 28 2.932 8.716 2.597 1.00 8.78 O ANISOU 52 O GLY A 28 1019 1571 747 335 -25 467 O ATOM 53 H GLY A 28 2.382 7.418 4.619 1.00 4.02 H ATOM 54 HA2 GLY A 28 0.983 6.842 2.743 1.00 6.67 H ATOM 55 HA3 GLY A 28 0.028 7.924 3.385 1.00 6.67 H ATOM 56 N ALA A 29 1.020 9.681 2.004 1.00 10.11 N ANISOU 56 N ALA A 29 1331 1672 837 61 -68 174 N ATOM 57 CA ALA A 29 1.749 10.686 1.260 1.00 16.93 C ANISOU 57 CA ALA A 29 2962 2416 1055 945 307 187 C ATOM 58 C ALA A 29 0.996 12.006 1.221 1.00 21.60 C ANISOU 58 C ALA A 29 3748 3283 1177 249 623 -68 C ATOM 59 O ALA A 29 1.479 13.011 0.675 1.00 20.63 O ANISOU 59 O ALA A 29 3148 3430 1262 -1187 443 -69 O ATOM 60 CB ALA A 29 2.028 10.162 -0.148 1.00 15.68 C ANISOU 60 CB ALA A 29 2434 2249 1274 1226 541 230 C ATOM 61 OXT ALA A 29 -0.111 12.089 1.749 1.00 21.38 O ANISOU 61 OXT ALA A 29 3298 3546 1278 -744 657 -85 O ATOM 62 H ALA A 29 0.164 9.766 2.020 1.00 12.11 H ATOM 63 HA ALA A 29 2.598 10.865 1.694 1.00 20.29 H ATOM 64 HB1 ALA A 29 2.415 10.875 -0.680 1.00 18.79 H ATOM 65 HB2 ALA A 29 2.648 9.418 -0.090 1.00 18.79 H ATOM 66 HB3 ALA A 29 1.194 9.867 -0.546 1.00 18.79 H TER 67 ALA A 29 MASTER 164 0 0 0 0 0 0 6 32 1 0 1 END