HEADER PROTEIN FIBRIL 15-OCT-19 6UOU TITLE MICROED STRUCTURE OF OSPYL/RCAR5 (24-29) AT 9 E-/A^2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABSCISIC ACID RECEPTOR PYL5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 24-29; COMPND 5 SYNONYM: PYR1-LIKE PROTEIN 11,OSPYL11,PYR1-LIKE PROTEIN 5,OSPYL5, COMPND 6 REGULATORY COMPONENTS OF ABA RECEPTOR 5; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ORYZA SATIVA; SOURCE 4 ORGANISM_COMMON: RICE; SOURCE 5 ORGANISM_TAXID: 4530 KEYWDS PROTOFILAMENT, PROTEIN FIBRIL EXPDTA ELECTRON CRYSTALLOGRAPHY AUTHOR M.GALLAGHER-JONES,L.S.RICHARDS,S.LEE,J.A.RODRIGUEZ REVDAT 3 13-MAR-24 6UOU 1 REMARK REVDAT 2 30-JUN-21 6UOU 1 REMARK REVDAT 1 13-MAY-20 6UOU 0 JRNL AUTH M.GALLAGHER-JONES,K.C.BUSTILLO,C.OPHUS,L.S.RICHARDS, JRNL AUTH 2 J.CISTON,S.LEE,A.M.MINOR,J.A.RODRIGUEZ JRNL TITL ATOMIC STRUCTURES DETERMINED FROM DIGITALLY DEFINED JRNL TITL 2 NANOCRYSTALLINE REGIONS JRNL REF IUCRJ V. 7 490 2020 JRNL REFN ESSN 2052-2525 JRNL DOI 10.1107/S2052252520004030 REMARK 2 REMARK 2 RESOLUTION. 1.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 1.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 1333 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.250 REMARK 3 R VALUE (WORKING SET) : 0.250 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.080 REMARK 3 FREE R VALUE TEST SET COUNT : 121 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 7.4620 - 1.0010 0.97 1212 121 0.2495 0.2497 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.000 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.52 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UOU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1000244974. REMARK 240 REMARK 240 EXPERIMENTAL DETAILS REMARK 240 RECONSTRUCTION METHOD : CRYSTALLOGRAPHY REMARK 240 SAMPLE TYPE : 3D ARRAY REMARK 240 SPECIMEN TYPE : NULL REMARK 240 DATA ACQUISITION REMARK 240 DATE OF DATA COLLECTION : 04-APR-19 REMARK 240 TEMPERATURE (KELVIN) : 100.0 REMARK 240 PH : 7.00 REMARK 240 NUMBER OF CRYSTALS USED : NULL REMARK 240 MICROSCOPE MODEL : FEI TECNAI F30 REMARK 240 DETECTOR TYPE : TVIPS TEMCAM-F416 (4K X 4K) REMARK 240 ACCELERATION VOLTAGE (KV) : 300 REMARK 240 NUMBER OF UNIQUE REFLECTIONS : 1339 REMARK 240 RESOLUTION RANGE HIGH (A) : 1.000 REMARK 240 RESOLUTION RANGE LOW (A) : 7.462 REMARK 240 DATA SCALING SOFTWARE : XSCALE REMARK 240 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 240 DATA REDUNDANCY : 9.163 REMARK 240 IN THE HIGHEST RESOLUTION SHELL REMARK 240 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) :1.00 REMARK 240 HIGHEST RESOLUTION SHELL, RANGE LOW (A) :1.10 REMARK 240 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 240 DATA REDUNDANCY IN SHELL : 9.70 REMARK 240 R MERGE FOR SHELL (I) : 0.69100 REMARK 240 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 240 SOFTWARE USED : NULL REMARK 240 STARTING MODEL : NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 2.36500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 19.79500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 5.68000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 19.79500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 2.36500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 5.68000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 29 O DBREF 6UOU A 24 29 UNP Q6I5C3 PYL5_ORYSJ 24 29 SEQRES 1 A 6 ALA VAL ALA ALA GLY ALA CRYST1 4.730 11.360 39.590 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.211416 0.000000 0.000000 0.00000 SCALE2 0.000000 0.088028 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025259 0.00000 ATOM 1 N ALA A 24 3.379 2.651 17.950 1.00 13.58 N ANISOU 1 N ALA A 24 2240 2204 714 311 79 329 N ATOM 2 CA ALA A 24 3.777 2.028 16.651 1.00 9.65 C ANISOU 2 CA ALA A 24 1199 1898 571 66 -63 312 C ATOM 3 C ALA A 24 3.100 2.766 15.536 1.00 7.64 C ANISOU 3 C ALA A 24 805 1605 492 12 105 246 C ATOM 4 O ALA A 24 1.884 2.879 15.478 1.00 7.72 O ANISOU 4 O ALA A 24 765 1643 524 -86 82 280 O ATOM 5 CB ALA A 24 3.400 0.621 16.601 1.00 14.70 C ANISOU 5 CB ALA A 24 2802 1980 802 116 -376 115 C ATOM 6 H1 ALA A 24 3.913 2.353 18.597 1.00 16.46 H ATOM 7 H2 ALA A 24 3.452 3.536 17.890 1.00 16.46 H ATOM 8 H3 ALA A 24 2.537 2.435 18.137 1.00 16.46 H ATOM 9 HA ALA A 24 4.741 2.073 16.552 1.00 11.75 H ATOM 10 HB1 ALA A 24 3.635 0.262 15.730 1.00 17.81 H ATOM 11 HB2 ALA A 24 3.878 0.141 17.295 1.00 17.81 H ATOM 12 HB3 ALA A 24 2.444 0.544 16.743 1.00 17.81 H ATOM 13 N VAL A 25 3.915 3.274 14.640 1.00 6.24 N ANISOU 13 N VAL A 25 651 1263 456 -79 167 164 N ATOM 14 CA VAL A 25 3.439 4.109 13.566 1.00 5.73 C ANISOU 14 CA VAL A 25 406 1356 415 -116 -25 145 C ATOM 15 C VAL A 25 4.085 3.594 12.307 1.00 4.97 C ANISOU 15 C VAL A 25 566 945 378 -147 36 145 C ATOM 16 O VAL A 25 5.307 3.453 12.246 1.00 4.33 O ANISOU 16 O VAL A 25 262 981 401 -34 2 185 O ATOM 17 CB VAL A 25 3.804 5.581 13.789 1.00 7.06 C ANISOU 17 CB VAL A 25 1010 1179 493 -255 22 74 C ATOM 18 CG1 VAL A 25 3.266 6.403 12.671 1.00 8.11 C ANISOU 18 CG1 VAL A 25 1136 1406 541 207 -74 272 C ATOM 19 CG2 VAL A 25 3.274 6.048 15.118 1.00 11.69 C ANISOU 19 CG2 VAL A 25 2170 1669 602 -326 138 49 C ATOM 20 H VAL A 25 4.765 3.146 14.634 1.00 7.65 H ATOM 21 HA VAL A 25 2.474 4.049 13.489 1.00 7.04 H ATOM 22 HB VAL A 25 4.768 5.687 13.803 1.00 8.64 H ATOM 23 HG11 VAL A 25 3.365 7.342 12.893 1.00 9.91 H ATOM 24 HG12 VAL A 25 3.763 6.200 11.863 1.00 9.91 H ATOM 25 HG13 VAL A 25 2.328 6.190 12.545 1.00 9.91 H ATOM 26 HG21 VAL A 25 3.424 7.002 15.200 1.00 14.20 H ATOM 27 HG22 VAL A 25 2.324 5.857 15.164 1.00 14.20 H ATOM 28 HG23 VAL A 25 3.741 5.577 15.826 1.00 14.20 H ATOM 29 N ALA A 26 3.268 3.300 11.320 1.00 5.18 N ANISOU 29 N ALA A 26 599 993 374 -90 92 29 N ATOM 30 CA ALA A 26 3.751 2.751 10.074 1.00 5.88 C ANISOU 30 CA ALA A 26 509 1354 373 -36 62 87 C ATOM 31 C ALA A 26 3.070 3.498 8.960 1.00 4.54 C ANISOU 31 C ALA A 26 488 840 396 -28 62 58 C ATOM 32 O ALA A 26 1.855 3.682 8.978 1.00 4.03 O ANISOU 32 O ALA A 26 275 851 404 29 -9 131 O ATOM 33 CB ALA A 26 3.457 1.258 9.956 1.00 7.89 C ANISOU 33 CB ALA A 26 1477 1112 410 72 -19 163 C ATOM 34 H ALA A 26 2.416 3.410 11.348 1.00 6.38 H ATOM 35 HA ALA A 26 4.713 2.865 10.010 1.00 7.23 H ATOM 36 HB1 ALA A 26 3.792 0.936 9.105 1.00 9.64 H ATOM 37 HB2 ALA A 26 3.898 0.791 10.683 1.00 9.64 H ATOM 38 HB3 ALA A 26 2.498 1.120 10.008 1.00 9.64 H ATOM 39 N ALA A 27 3.853 3.920 8.003 1.00 5.64 N ANISOU 39 N ALA A 27 543 1100 502 86 49 -64 N ATOM 40 CA ALA A 27 3.302 4.586 6.855 1.00 5.77 C ANISOU 40 CA ALA A 27 314 1252 626 -8 7 -50 C ATOM 41 C ALA A 27 3.990 4.013 5.648 1.00 6.78 C ANISOU 41 C ALA A 27 690 1162 726 110 -5 -14 C ATOM 42 O ALA A 27 5.212 3.863 5.627 1.00 5.88 O ANISOU 42 O ALA A 27 401 1111 723 59 6 159 O ATOM 43 CB ALA A 27 3.562 6.079 6.905 1.00 6.46 C ANISOU 43 CB ALA A 27 516 1292 646 101 54 -187 C ATOM 44 H ALA A 27 4.708 3.831 7.995 1.00 6.94 H ATOM 45 HA ALA A 27 2.344 4.447 6.803 1.00 7.09 H ATOM 46 HB1 ALA A 27 3.156 6.495 6.128 1.00 7.92 H ATOM 47 HB2 ALA A 27 3.172 6.440 7.716 1.00 7.92 H ATOM 48 HB3 ALA A 27 4.519 6.233 6.901 1.00 7.92 H ATOM 49 N GLY A 28 3.205 3.714 4.643 1.00 9.51 N ANISOU 49 N GLY A 28 954 1772 887 -24 -25 -266 N ATOM 50 CA GLY A 28 3.795 3.410 3.367 1.00 14.37 C ANISOU 50 CA GLY A 28 1881 2516 1063 368 179 -525 C ATOM 51 C GLY A 28 2.946 2.452 2.588 1.00 17.22 C ANISOU 51 C GLY A 28 2214 3096 1233 811 -59 -546 C ATOM 52 O GLY A 28 1.761 2.707 2.368 1.00 17.60 O ANISOU 52 O GLY A 28 2328 3019 1339 1198 30 -541 O ATOM 53 H GLY A 28 2.347 3.681 4.674 1.00 11.58 H ATOM 54 HA2 GLY A 28 3.894 4.226 2.852 1.00 17.41 H ATOM 55 HA3 GLY A 28 4.670 3.013 3.499 1.00 17.41 H ATOM 56 N ALA A 29 3.539 1.343 2.169 1.00 23.63 N ANISOU 56 N ALA A 29 3701 3901 1377 1422 -47 -361 N ATOM 57 CA ALA A 29 2.820 0.378 1.363 1.00 26.55 C ANISOU 57 CA ALA A 29 4144 4407 1539 1779 -36 -215 C ATOM 58 C ALA A 29 3.559 -0.957 1.340 1.00 29.64 C ANISOU 58 C ALA A 29 5134 4450 1676 1856 112 -9 C ATOM 59 CB ALA A 29 2.646 0.938 -0.056 1.00 25.27 C ANISOU 59 CB ALA A 29 3277 4762 1562 1802 -293 -143 C ATOM 60 H ALA A 29 4.355 1.130 2.340 1.00 28.53 H ATOM 61 HA ALA A 29 1.940 0.217 1.737 1.00 32.04 H ATOM 62 HB1 ALA A 29 2.249 0.255 -0.619 1.00 30.49 H ATOM 63 HB2 ALA A 29 2.065 1.714 -0.020 1.00 30.49 H ATOM 64 HB3 ALA A 29 3.515 1.191 -0.406 1.00 30.49 H TER 65 ALA A 29 MASTER 171 0 0 0 0 0 0 6 30 1 0 1 END