HEADER ANTIBIOTIC 06-DEC-23 8RC7 TITLE THE STRUCTURE OF MEMBRANE-ACTIVE ANTIBIOTIC CYCLODECAPEPTIDE TITLE 2 GRAMICIDIN S IN COMPLEX WITH UREA COMPND MOL_ID: 1; COMPND 2 MOLECULE: GRAMICIDIN S; COMPND 3 CHAIN: D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BREVIBACILLUS BREVIS; SOURCE 3 ORGANISM_TAXID: 1393 KEYWDS A CYCLIC DECAPEPTIDE, ANTIBIOTIC EXPDTA X-RAY DIFFRACTION AUTHOR E.J.DODSON REVDAT 1 06-MAR-24 8RC7 0 JRNL AUTH E.J.DODSON JRNL TITL THE CRYSTAL STRUCTURE OF A HYDRATED GRAMICIDIN S UREA JRNL TITL 2 COMPLEX JRNL REF NATURE V. 275 206 1978 JRNL REFN ISSN 0028-0836 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.N.TISHCHENKO,V.I.ANDRIANOV,B.K.VAINSTEIN,M.M.WOOLFSON, REMARK 1 AUTH 2 E.J.DODSON REMARK 1 TITL CHANNELS IN THE GRAMICIDIN S-WITH-UREA STRUCTURE AND THEIR REMARK 1 TITL 2 POSSIBLE RELATION TO TRANSMEMBRANE ION TRANSPORT. REMARK 1 REF ACTA CRYSTALLOGR D BIOL V. 53 151 1997 REMARK 1 REF 2 CRYSTALLOGR REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 15299949 REMARK 1 DOI 10.1107/S0907444995000916 REMARK 2 REMARK 2 RESOLUTION. 0.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0411 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 80.7 REMARK 3 NUMBER OF REFLECTIONS : 4028 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM SELECTION REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.132 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.089 REMARK 3 FREE R VALUE TEST SET COUNT : 205 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 0.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.01 REMARK 3 REFLECTION IN BIN (WORKING SET) : 141 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 41.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.1600 REMARK 3 BIN FREE R VALUE SET COUNT : 7 REMARK 3 BIN FREE R VALUE : 0.1430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 82 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 9 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 8.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06400 REMARK 3 B22 (A**2) : 0.06400 REMARK 3 B33 (A**2) : -0.20800 REMARK 3 B12 (A**2) : 0.03200 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.026 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.023 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.015 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.276 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.988 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 97 ; 0.021 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 103 ; 0.004 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 134 ; 2.196 ; 1.624 REMARK 3 BOND ANGLES OTHERS (DEGREES): 238 ; 0.881 ; 1.564 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 12 ; 7.751 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 15 ; 9.574 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 16 ; 1.735 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 104 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 20 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 9 ; 0.244 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 12 ; 0.114 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 42 ; 0.221 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 3 ; 0.119 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 46 ; 1.023 ; 0.620 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 45 ; 1.020 ; 0.620 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 58 ; 1.336 ; 1.126 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 59 ; 1.332 ; 1.122 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 51 ; 2.916 ; 0.965 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 50 ; 2.927 ; 0.980 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 76 ; 4.176 ; 1.583 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 74 ; 4.228 ; 1.597 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THEIR RIDING POSITIONS. REMARK 3 AT THIS RESOLUTION THE FREER IS OFTEN EQUAL TO THE OVERALL R FACTOR REMARK 4 REMARK 4 8RC7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1292130977. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-78 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5406 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : DIFFRACTOMETER REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 4028 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.980 REMARK 200 RESOLUTION RANGE LOW (A) : 22.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 81.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 210.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: AB INITIO PHASING REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 30.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: UREA, HCL, 95% ETHANOL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 7.16333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 14.32667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 14.32667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 7.16333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 1390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C URE D 101 LIES ON A SPECIAL POSITION. REMARK 375 O URE D 101 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 206 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 207 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 GRAMICIDIN S IS A CYCLODECAPEPTIDE, CONSTRUCTED AS TWO REMARK 400 IDENTICAL PENTAPEPTIDES JOINED HEAD TO TAIL, PRODUCED BY REMARK 400 THE GRAM POSITIVE BACTERIUM BACILLUS BREVIS REMARK 400 HERE, GRAMICIDIN S IS REPRESENTED BY THE SEQUENCE (SEQRES) REMARK 400 REMARK 400 THE GRAMICIDIN S IS CYCLIC PEPTIDE, A MEMBER OF ANTIBIOTIC CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: GRAMICIDIN S REMARK 400 CHAIN: D REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: GRAMICIDIN S IS A DECAPEPTIDE, RESIDUES 1 AND 10 REMARK 400 FORM A PEPTIDE BOND RESULTING IN CYCLIZATION. DBREF 8RC7 D 1 10 PDB 8RC7 8RC7 1 10 SEQRES 1 D 10 VAL ORN LEU DPN PRO VAL ORN LEU DPN PRO HET ORN D 2 18 HET DPN D 4 20 HET ORN D 7 18 HET DPN D 9 20 HET URE D 101 8 HETNAM ORN L-ORNITHINE HETNAM DPN D-PHENYLALANINE HETNAM URE UREA FORMUL 1 ORN 2(C5 H12 N2 O2) FORMUL 1 DPN 2(C9 H11 N O2) FORMUL 2 URE C H4 N2 O FORMUL 3 HOH *9(H2 O) SHEET 1 AA1 2 ORN D 2 LEU D 3 0 SHEET 2 AA1 2 VAL D 6 ORN D 7 -1 O VAL D 6 N LEU D 3 LINK C AVAL D 1 N ORN D 2 1555 1555 1.34 LINK C BVAL D 1 N ORN D 2 1555 1555 1.32 LINK N AVAL D 1 C PRO D 10 1555 1555 1.36 LINK N BVAL D 1 C PRO D 10 1555 1555 1.29 LINK C ORN D 2 N LEU D 3 1555 1555 1.33 LINK C LEU D 3 N DPN D 4 1555 1555 1.32 LINK C DPN D 4 N PRO D 5 1555 1555 1.32 LINK C VAL D 6 N ORN D 7 1555 1555 1.30 LINK C ORN D 7 N LEU D 8 1555 1555 1.31 LINK C LEU D 8 N DPN D 9 1555 1555 1.33 LINK C DPN D 9 N PRO D 10 1555 1555 1.34 CRYST1 25.800 25.800 21.490 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.038760 0.022378 0.000000 0.00000 SCALE2 0.000000 0.044756 0.000000 0.00000 SCALE3 0.000000 0.000000 0.046533 0.00000 ATOM 1 N AVAL D 1 22.514 10.063 -0.643 0.50 5.80 N0 ATOM 2 N BVAL D 1 22.604 9.968 -0.680 0.50 5.31 N0 ATOM 3 CA AVAL D 1 21.926 9.504 0.589 0.50 6.05 C0 ATOM 4 CA BVAL D 1 22.316 9.300 0.561 0.50 5.19 C0 ATOM 5 C AVAL D 1 21.567 8.040 0.329 0.50 6.01 C0 ATOM 6 C BVAL D 1 21.581 8.002 0.330 0.50 5.33 C0 ATOM 7 O AVAL D 1 21.456 7.616 -0.847 0.50 6.72 O0 ATOM 8 O BVAL D 1 20.875 7.762 -0.667 0.50 4.97 O0 ATOM 9 CB AVAL D 1 20.718 10.373 1.027 0.50 8.50 C0 ATOM 10 CB BVAL D 1 21.479 10.181 1.485 0.50 5.67 C0 ATOM 11 CG1AVAL D 1 19.980 9.986 2.304 0.50 8.49 C0 ATOM 12 CG1BVAL D 1 22.209 11.485 1.802 0.50 7.41 C0 ATOM 13 CG2AVAL D 1 21.158 11.809 1.134 0.50 9.65 C0 ATOM 14 CG2BVAL D 1 20.134 10.424 0.878 0.50 6.52 C0 ATOM 15 H1 AVAL D 1 21.929 10.231 -1.323 0.50 5.94 H0 ATOM 16 H1 BVAL D 1 21.938 10.108 -1.290 0.50 5.49 H0 ATOM 17 HA AVAL D 1 22.600 9.536 1.291 0.50 6.39 H0 ATOM 18 HA BVAL D 1 23.156 9.099 1.009 0.50 5.36 H0 ATOM 19 HB AVAL D 1 20.059 10.328 0.291 0.50 8.18 H0 ATOM 20 HB BVAL D 1 21.347 9.691 2.333 0.50 6.02 H0 ATOM 21 HG11AVAL D 1 20.610 9.943 3.044 0.50 8.50 H0 ATOM 22 HG11BVAL D 1 22.112 12.103 1.051 0.50 6.85 H0 ATOM 23 HG12AVAL D 1 19.560 9.117 2.186 0.50 8.50 H0 ATOM 24 HG12BVAL D 1 23.157 11.300 1.950 0.50 6.85 H0 ATOM 25 HG13AVAL D 1 19.297 10.652 2.499 0.50 8.50 H0 ATOM 26 HG13BVAL D 1 21.825 11.886 2.605 0.50 6.85 H0 ATOM 27 HG21AVAL D 1 20.387 12.372 1.326 0.50 9.29 H0 ATOM 28 HG21BVAL D 1 19.520 10.742 1.565 0.50 6.25 H0 ATOM 29 HG22AVAL D 1 21.562 12.089 0.295 0.50 9.28 H0 ATOM 30 HG22BVAL D 1 19.793 9.594 0.499 0.50 6.25 H0 ATOM 31 HG23AVAL D 1 21.809 11.897 1.852 0.50 9.29 H0 ATOM 32 HG23BVAL D 1 20.210 11.094 0.176 0.50 6.25 H0 HETATM 33 N ORN D 2 21.602 7.214 1.388 1.00 5.78 N0 HETATM 34 CA ORN D 2 20.931 5.929 1.392 1.00 5.62 C0 HETATM 35 CB ORN D 2 21.857 4.824 1.822 1.00 8.01 C0 HETATM 36 CG ORN D 2 21.256 3.471 1.586 1.00 11.60 C0 HETATM 37 CD ORN D 2 22.107 2.339 2.075 1.00 16.24 C0 HETATM 38 NE ORN D 2 21.456 1.055 1.676 1.00 16.22 N0 HETATM 39 C ORN D 2 19.756 6.013 2.331 1.00 5.52 C0 HETATM 40 O ORN D 2 19.869 6.500 3.456 1.00 6.67 O0 HETATM 41 H ORN D 2 22.059 7.471 2.137 1.00 5.71 H0 HETATM 42 HA ORN D 2 20.604 5.733 0.485 1.00 6.03 H0 HETATM 43 HB2 ORN D 2 22.696 4.897 1.322 1.00 8.04 H0 HETATM 44 HB3 ORN D 2 22.058 4.927 2.776 1.00 8.02 H0 HETATM 45 HG2 ORN D 2 20.387 3.421 2.036 1.00 11.45 H0 HETATM 46 HG3 ORN D 2 21.102 3.352 0.625 1.00 11.51 H0 HETATM 47 HD2 ORN D 2 23.000 2.399 1.677 1.00 15.02 H0 HETATM 48 HD3 ORN D 2 22.190 2.382 3.050 1.00 15.02 H0 HETATM 49 HE1 ORN D 2 21.928 0.341 2.004 1.00 16.22 H0 HETATM 50 HE2 ORN D 2 21.435 0.977 0.764 1.00 16.20 H0 ATOM 51 N LEU D 3 18.606 5.543 1.847 1.00 5.55 N0 ATOM 52 CA LEU D 3 17.397 5.463 2.618 1.00 5.68 C0 ATOM 53 C LEU D 3 16.940 4.012 2.619 1.00 5.81 C0 ATOM 54 O LEU D 3 16.269 3.575 1.698 1.00 6.91 O0 ATOM 55 CB LEU D 3 16.290 6.305 2.046 1.00 7.18 C0 ATOM 56 CG LEU D 3 16.548 7.791 1.865 1.00 10.51 C0 ATOM 57 CD1 LEU D 3 17.196 7.996 0.508 1.00 15.66 C0 ATOM 58 CD2 LEU D 3 15.187 8.514 1.935 1.00 15.47 C0 ATOM 59 H LEU D 3 18.581 5.257 0.979 1.00 5.59 H0 ATOM 60 HA LEU D 3 17.585 5.743 3.543 1.00 5.94 H0 ATOM 61 HB2 LEU D 3 16.047 5.933 1.176 1.00 7.49 H0 ATOM 62 HB3 LEU D 3 15.510 6.204 2.628 1.00 7.49 H0 ATOM 63 HG LEU D 3 17.146 8.121 2.581 1.00 11.29 H0 ATOM 64 HD11 LEU D 3 17.204 8.947 0.293 1.00 13.85 H0 ATOM 65 HD12 LEU D 3 16.690 7.515 -0.173 1.00 13.77 H0 ATOM 66 HD13 LEU D 3 18.112 7.662 0.529 1.00 13.72 H0 ATOM 67 HD21 LEU D 3 14.851 8.488 2.848 1.00 13.74 H0 ATOM 68 HD22 LEU D 3 14.553 8.071 1.344 1.00 13.75 H0 ATOM 69 HD23 LEU D 3 15.296 9.440 1.656 1.00 13.79 H0 HETATM 70 N DPN D 4 17.333 3.259 3.629 1.00 6.49 N0 HETATM 71 CA DPN D 4 17.014 1.865 3.648 1.00 6.66 C0 HETATM 72 C DPN D 4 17.582 1.210 2.429 1.00 6.85 C0 HETATM 73 O DPN D 4 18.794 1.315 2.232 1.00 8.78 O0 HETATM 74 CB DPN D 4 17.473 1.250 4.943 1.00 8.04 C0 HETATM 75 CG DPN D 4 17.016 -0.172 5.100 1.00 8.45 C0 HETATM 76 CD1 DPN D 4 15.725 -0.456 5.440 1.00 9.46 C0 HETATM 77 CD2 DPN D 4 17.900 -1.207 4.965 1.00 12.86 C0 HETATM 78 CE1 DPN D 4 15.304 -1.754 5.608 1.00 10.42 C0 HETATM 79 CE2 DPN D 4 17.463 -2.517 5.128 1.00 14.09 C0 HETATM 80 CZ DPN D 4 16.161 -2.760 5.420 1.00 12.82 C0 HETATM 81 H DPN D 4 17.810 3.622 4.319 1.00 6.37 H0 HETATM 82 HA DPN D 4 16.029 1.782 3.608 1.00 6.90 H0 HETATM 83 HB2 DPN D 4 18.452 1.281 4.977 1.00 7.83 H0 HETATM 84 HB3 DPN D 4 17.125 1.784 5.687 1.00 7.79 H0 HETATM 85 HD1 DPN D 4 15.109 0.251 5.548 1.00 9.48 H0 HETATM 86 HD2 DPN D 4 18.798 -1.032 4.734 1.00 11.81 H0 HETATM 87 HE1 DPN D 4 14.402 -1.934 5.817 1.00 10.72 H0 HETATM 88 HE2 DPN D 4 18.065 -3.235 5.010 1.00 13.38 H0 HETATM 89 HZ DPN D 4 15.870 -3.649 5.549 1.00 12.43 H0 ATOM 90 N PRO D 5 16.824 0.512 1.599 1.00 6.53 N0 ATOM 91 CA PRO D 5 17.402 -0.220 0.489 1.00 7.77 C0 ATOM 92 C PRO D 5 17.734 0.567 -0.741 1.00 6.87 C0 ATOM 93 O PRO D 5 18.168 -0.045 -1.728 1.00 9.76 O0 ATOM 94 CB PRO D 5 16.334 -1.228 0.131 1.00 11.52 C0 ATOM 95 CG PRO D 5 15.105 -0.750 0.692 1.00 11.46 C0 ATOM 96 CD PRO D 5 15.384 0.264 1.762 1.00 7.58 C0 ATOM 97 HA PRO D 5 18.207 -0.703 0.803 1.00 7.90 H0 ATOM 98 HB2 PRO D 5 16.251 -1.318 -0.842 1.00 10.50 H0 ATOM 99 HB3 PRO D 5 16.557 -2.108 0.503 1.00 10.52 H0 ATOM 100 HG2 PRO D 5 14.557 -0.345 -0.011 1.00 10.44 H0 ATOM 101 HG3 PRO D 5 14.601 -1.499 1.070 1.00 10.44 H0 ATOM 102 HD2 PRO D 5 14.868 1.079 1.622 1.00 8.04 H0 ATOM 103 HD3 PRO D 5 15.186 -0.095 2.647 1.00 8.04 H0 ATOM 104 N VAL D 6 17.459 1.866 -0.799 1.00 6.16 N0 ATOM 105 CA VAL D 6 17.684 2.615 -2.032 1.00 6.43 C0 ATOM 106 C VAL D 6 18.590 3.796 -1.791 1.00 5.92 C0 ATOM 107 O VAL D 6 18.673 4.319 -0.669 1.00 8.00 O0 ATOM 108 CB VAL D 6 16.372 3.082 -2.685 1.00 8.21 C0 ATOM 109 CG1 VAL D 6 15.610 1.874 -3.197 1.00 10.01 C0 ATOM 110 CG2 VAL D 6 15.563 3.971 -1.755 1.00 9.14 C0 ATOM 111 H VAL D 6 17.132 2.303 -0.066 1.00 6.43 H0 ATOM 112 HA VAL D 6 18.132 2.023 -2.661 1.00 6.60 H0 ATOM 113 HB VAL D 6 16.619 3.628 -3.472 1.00 8.28 H0 ATOM 114 HG11 VAL D 6 15.464 1.248 -2.467 1.00 9.40 H0 ATOM 115 HG12 VAL D 6 16.124 1.439 -3.899 1.00 9.43 H0 ATOM 116 HG13 VAL D 6 14.751 2.159 -3.555 1.00 9.43 H0 ATOM 117 HG21 VAL D 6 14.729 4.221 -2.190 1.00 8.84 H0 ATOM 118 HG22 VAL D 6 16.070 4.774 -1.546 1.00 8.83 H0 ATOM 119 HG23 VAL D 6 15.365 3.490 -0.933 1.00 8.81 H0 HETATM 120 N ORN D 7 19.222 4.233 -2.833 1.00 6.32 N0 HETATM 121 CA ORN D 7 20.078 5.404 -2.860 1.00 6.84 C0 HETATM 122 CB ORN D 7 21.384 5.093 -3.578 1.00 9.24 C0 HETATM 123 CG ORN D 7 22.251 4.147 -2.790 1.00 13.23 C0 HETATM 124 CD ORN D 7 23.434 3.702 -3.616 1.00 20.87 C0 HETATM 125 NE ORN D 7 24.336 2.939 -2.748 1.00 30.17 N0 HETATM 126 C ORN D 7 19.371 6.495 -3.618 1.00 6.07 C0 HETATM 127 O ORN D 7 18.841 6.251 -4.722 1.00 8.95 O0 HETATM 128 H ORN D 7 19.120 3.770 -3.614 1.00 6.34 H0 HETATM 129 HA ORN D 7 20.262 5.698 -1.941 1.00 6.94 H0 HETATM 130 HB2 ORN D 7 21.181 4.695 -4.450 1.00 9.42 H0 HETATM 131 HB3 ORN D 7 21.873 5.929 -3.728 1.00 9.36 H0 HETATM 132 HG2 ORN D 7 22.576 4.592 -1.978 1.00 13.53 H0 HETATM 133 HG3 ORN D 7 21.730 3.360 -2.525 1.00 13.49 H0 HETATM 134 HD2 ORN D 7 23.129 3.140 -4.357 1.00 20.51 H0 HETATM 135 HD3 ORN D 7 23.899 4.483 -3.978 1.00 20.51 H0 HETATM 136 HE1 ORN D 7 25.066 2.689 -3.192 1.00 26.89 H0 HETATM 137 HE2 ORN D 7 23.939 2.199 -2.453 1.00 26.78 H0 ATOM 138 N LEU D 8 19.387 7.695 -3.104 1.00 5.98 N0 ATOM 139 CA LEU D 8 18.791 8.832 -3.785 1.00 6.38 C0 ATOM 140 C LEU D 8 19.699 10.014 -3.588 1.00 5.38 C0 ATOM 141 O LEU D 8 20.007 10.410 -2.447 1.00 6.39 O0 ATOM 142 CB LEU D 8 17.439 9.175 -3.200 1.00 8.33 C0 ATOM 143 CG LEU D 8 16.334 8.198 -3.531 1.00 12.38 C0 ATOM 144 CD1 LEU D 8 15.108 8.561 -2.714 1.00 18.47 C0 ATOM 145 CD2 LEU D 8 15.999 8.204 -5.006 1.00 13.32 C0 ATOM 146 H LEU D 8 19.782 7.828 -2.290 1.00 6.09 H0 ATOM 147 HA LEU D 8 18.708 8.634 -4.746 1.00 6.46 H0 ATOM 148 HB2 LEU D 8 17.528 9.228 -2.228 1.00 8.66 H0 ATOM 149 HB3 LEU D 8 17.177 10.061 -3.522 1.00 8.60 H0 ATOM 150 HG LEU D 8 16.627 7.289 -3.275 1.00 12.51 H0 ATOM 151 HD11 LEU D 8 14.392 7.926 -2.906 1.00 16.36 H0 ATOM 152 HD12 LEU D 8 14.816 9.463 -2.949 1.00 16.36 H0 ATOM 153 HD13 LEU D 8 15.328 8.527 -1.763 1.00 16.27 H0 ATOM 154 HD21 LEU D 8 16.681 7.711 -5.496 1.00 12.95 H0 ATOM 155 HD22 LEU D 8 15.968 9.121 -5.329 1.00 12.95 H0 ATOM 156 HD23 LEU D 8 15.133 7.782 -5.145 1.00 13.02 H0 HETATM 157 N DPN D 9 20.175 10.590 -4.682 1.00 5.86 N0 HETATM 158 CA DPN D 9 21.233 11.585 -4.556 1.00 5.67 C0 HETATM 159 C DPN D 9 22.385 11.002 -3.810 1.00 5.48 C0 HETATM 160 O DPN D 9 22.753 9.883 -4.122 1.00 6.84 O0 HETATM 161 CB DPN D 9 21.616 12.088 -5.919 1.00 7.17 C0 HETATM 162 CG DPN D 9 22.575 13.222 -5.868 1.00 7.07 C0 HETATM 163 CD1 DPN D 9 23.913 13.006 -5.842 1.00 8.73 C0 HETATM 164 CD2 DPN D 9 22.135 14.509 -5.745 1.00 8.27 C0 HETATM 165 CE1 DPN D 9 24.796 14.071 -5.770 1.00 10.72 C0 HETATM 166 CE2 DPN D 9 23.024 15.562 -5.625 1.00 9.52 C0 HETATM 167 CZ DPN D 9 24.327 15.320 -5.627 1.00 10.69 C0 HETATM 168 H DPN D 9 19.910 10.430 -5.539 1.00 5.75 H0 HETATM 169 HA DPN D 9 20.878 12.347 -4.034 1.00 5.93 H0 HETATM 170 HB2 DPN D 9 22.015 11.351 -6.426 1.00 6.78 H0 HETATM 171 HB3 DPN D 9 20.805 12.375 -6.388 1.00 6.77 H0 HETATM 172 HD1 DPN D 9 24.245 12.126 -5.928 1.00 8.72 H0 HETATM 173 HD2 DPN D 9 21.207 14.679 -5.717 1.00 8.26 H0 HETATM 174 HE1 DPN D 9 25.724 13.912 -5.768 1.00 10.17 H0 HETATM 175 HE2 DPN D 9 22.705 16.447 -5.555 1.00 9.46 H0 HETATM 176 HZ DPN D 9 24.934 16.042 -5.582 1.00 10.35 H0 ATOM 177 N PRO D 10 22.964 11.667 -2.806 1.00 5.48 N0 ATOM 178 CA PRO D 10 24.144 11.148 -2.147 1.00 5.93 C0 ATOM 179 C PRO D 10 23.817 10.348 -0.894 1.00 6.20 C0 ATOM 180 O PRO D 10 24.760 10.050 -0.139 1.00 9.22 O0 ATOM 181 CB PRO D 10 24.896 12.410 -1.811 1.00 7.26 C0 ATOM 182 CG PRO D 10 23.777 13.360 -1.421 1.00 7.73 C0 ATOM 183 CD PRO D 10 22.649 13.030 -2.366 1.00 6.50 C0 ATOM 184 HA PRO D 10 24.674 10.602 -2.780 1.00 6.11 H0 ATOM 185 HB2 PRO D 10 25.519 12.271 -1.068 1.00 7.04 H0 ATOM 186 HB3 PRO D 10 25.391 12.747 -2.588 1.00 7.04 H0 ATOM 187 HG2 PRO D 10 23.506 13.216 -0.492 1.00 7.33 H0 ATOM 188 HG3 PRO D 10 24.058 14.291 -1.528 1.00 7.33 H0 ATOM 189 HD2 PRO D 10 21.788 13.060 -1.911 1.00 6.49 H0 ATOM 190 HD3 PRO D 10 22.632 13.647 -3.120 1.00 6.50 H0 TER 191 PRO D 10 HETATM 192 C URE D 101 -4.742 8.210 -7.162 0.50 6.77 C0 HETATM 193 O URE D 101 -5.356 9.278 -7.164 0.50 7.28 O0 HETATM 194 N1 URE D 101 -4.905 7.294 -8.125 0.50 8.41 N0 HETATM 195 N2 URE D 101 -3.930 7.877 -6.153 0.50 8.45 N0 HETATM 196 HN11 URE D 101 -5.452 7.465 -8.798 0.00 8.31 H0 HETATM 197 HN12 URE D 101 -4.443 6.550 -8.103 0.00 8.31 H0 HETATM 198 HN21 URE D 101 -3.798 8.438 -5.493 0.00 8.49 H0 HETATM 199 HN22 URE D 101 -3.487 7.113 -6.192 0.00 8.49 H0 HETATM 200 O HOH D 201 25.574 7.980 1.425 1.00 12.16 O0 HETATM 201 O HOH D 202 19.125 -2.625 -1.902 1.00 12.77 O0 HETATM 202 O HOH D 203 17.852 4.839 -7.000 1.00 29.50 O0 HETATM 203 O HOH D 204 23.996 7.522 -2.789 1.00 24.51 O0 HETATM 204 O HOH D 205 22.069 0.690 -1.412 1.00 31.03 O0 HETATM 205 O HOH D 206 -2.880 4.988 -7.163 0.50 13.01 O0 HETATM 206 O HOH D 207 20.820 0.000 -3.581 0.50 35.22 O0 HETATM 207 O HOH D 208 25.161 5.487 -0.148 1.00 33.60 O0 HETATM 208 O HOH D 209 21.471 -2.433 -0.120 0.50 20.94 O0 CONECT 1 179 CONECT 2 179 CONECT 5 33 CONECT 6 33 CONECT 33 5 6 34 41 CONECT 34 33 35 39 42 CONECT 35 34 36 43 44 CONECT 36 35 37 45 46 CONECT 37 36 38 47 48 CONECT 38 37 49 50 CONECT 39 34 40 51 CONECT 40 39 CONECT 41 33 CONECT 42 34 CONECT 43 35 CONECT 44 35 CONECT 45 36 CONECT 46 36 CONECT 47 37 CONECT 48 37 CONECT 49 38 CONECT 50 38 CONECT 51 39 CONECT 53 70 CONECT 70 53 71 81 CONECT 71 70 72 74 82 CONECT 72 71 73 90 CONECT 73 72 CONECT 74 71 75 83 84 CONECT 75 74 76 77 CONECT 76 75 78 85 CONECT 77 75 79 86 CONECT 78 76 80 87 CONECT 79 77 80 88 CONECT 80 78 79 89 CONECT 81 70 CONECT 82 71 CONECT 83 74 CONECT 84 74 CONECT 85 76 CONECT 86 77 CONECT 87 78 CONECT 88 79 CONECT 89 80 CONECT 90 72 CONECT 106 120 CONECT 120 106 121 128 CONECT 121 120 122 126 129 CONECT 122 121 123 130 131 CONECT 123 122 124 132 133 CONECT 124 123 125 134 135 CONECT 125 124 136 137 CONECT 126 121 127 138 CONECT 127 126 CONECT 128 120 CONECT 129 121 CONECT 130 122 CONECT 131 122 CONECT 132 123 CONECT 133 123 CONECT 134 124 CONECT 135 124 CONECT 136 125 CONECT 137 125 CONECT 138 126 CONECT 140 157 CONECT 157 140 158 168 CONECT 158 157 159 161 169 CONECT 159 158 160 177 CONECT 160 159 CONECT 161 158 162 170 171 CONECT 162 161 163 164 CONECT 163 162 165 172 CONECT 164 162 166 173 CONECT 165 163 167 174 CONECT 166 164 167 175 CONECT 167 165 166 176 CONECT 168 157 CONECT 169 158 CONECT 170 161 CONECT 171 161 CONECT 172 163 CONECT 173 164 CONECT 174 165 CONECT 175 166 CONECT 176 167 CONECT 177 159 CONECT 179 1 2 CONECT 192 193 194 195 CONECT 193 192 CONECT 194 192 196 197 CONECT 195 192 198 199 CONECT 196 194 CONECT 197 194 CONECT 198 195 CONECT 199 195 MASTER 284 0 5 0 2 0 0 6 95 1 96 1 END