HEADER DNA 01-NOV-24 9KCC TITLE DNA DUPLEX CONTAINING COPPER-MEDIATED 5-FLUOROURACIL-CYTOSINE BASE TITLE 2 PAIRS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*GP*GP*AP*CP*CP*CP*(UFP)P*GP*GP*TP*CP*C)-3'); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS METAL-MEDIATED BASE PAIR, COPPER, 5-FLUOROURACIL, DNA EXPDTA X-RAY DIFFRACTION AUTHOR J.KONDO,K.HIRABAYASHI,H.TORIGOE,S.ADACHI REVDAT 1 10-SEP-25 9KCC 0 JRNL AUTH H.TORIGOE,K.HIRABAYASHI,S.ADACHI,J.KONDO JRNL TITL NOVEL SPECIFIC BINDING OF COPPER IONS TO NATURALLY MODIFIED JRNL TITL 2 BASE PAIRS INVOLVING 5-FLUOROURACIL IN DUPLEX DNA. JRNL REF DALTON TRANS V. 54 7208 2025 JRNL REFN ESSN 1477-9234 JRNL PMID 40265694 JRNL DOI 10.1039/D5DT00619H REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 4875 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 242 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.1000 - 2.9100 0.99 2314 125 0.1692 0.1888 REMARK 3 2 2.9100 - 2.3100 0.99 2319 117 0.3994 0.4420 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 NULL REMARK 3 ANGLE : 1.115 NULL REMARK 3 CHIRALITY : 0.048 46 REMARK 3 PLANARITY : 0.006 12 REMARK 3 DIHEDRAL : 11.312 110 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9KCC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-NOV-24. REMARK 100 THE DEPOSITION ID IS D_1300053276. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-AUG-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.37776 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 4875 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.310 REMARK 200 RESOLUTION RANGE LOW (A) : 27.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 200 DATA REDUNDANCY : 13.60 REMARK 200 R MERGE (I) : 0.03200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.45 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.61100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: MODELLER REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, MOPS, SPERMINE, COPPER CHLORIDE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.28850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 19.73350 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 19.73350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 18.64425 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 19.73350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 19.73350 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 55.93275 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 19.73350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 19.73350 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 18.64425 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 19.73350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 19.73350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 55.93275 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 37.28850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 39.46700 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 39.46700 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 37.28850 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 101 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC A 6 N3 REMARK 620 2 UFP A 7 N3 84.2 REMARK 620 N 1 DBREF 9KCC A 1 12 PDB 9KCC 9KCC 1 12 SEQRES 1 A 12 DG DG DA DC DC DC UFP DG DG DT DC DC HET UFP A 7 20 HET CU A 101 1 HETNAM UFP 5-FLUORO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE HETNAM CU COPPER (II) ION FORMUL 1 UFP C9 H12 F N2 O8 P FORMUL 2 CU CU 2+ LINK O3' DC A 6 P UFP A 7 1555 1555 1.60 LINK O3' UFP A 7 P DG A 8 1555 1555 1.61 LINK N3 DC A 6 CU CU A 101 1555 1555 1.99 LINK N3 UFP A 7 CU CU A 101 1555 8665 1.79 CRYST1 39.467 39.467 74.577 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025338 0.000000 0.000000 0.00000 SCALE2 0.000000 0.025338 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013409 0.00000 ATOM 1 O5' DG A 1 5.937 15.316 11.076 1.00103.11 O ATOM 2 C5' DG A 1 6.640 14.200 11.576 1.00 93.66 C ATOM 3 C4' DG A 1 8.110 14.292 11.219 1.00 92.97 C ATOM 4 O4' DG A 1 8.265 14.289 9.772 1.00 89.66 O ATOM 5 C3' DG A 1 8.811 15.563 11.675 1.00 90.97 C ATOM 6 O3' DG A 1 9.259 15.423 12.995 1.00 98.62 O ATOM 7 C2' DG A 1 9.981 15.616 10.704 1.00 93.57 C ATOM 8 C1' DG A 1 9.296 15.198 9.406 1.00 88.04 C ATOM 9 N9 DG A 1 8.693 16.322 8.696 1.00 83.83 N ATOM 10 C8 DG A 1 7.355 16.618 8.595 1.00 86.12 C ATOM 11 N7 DG A 1 7.116 17.695 7.882 1.00 90.53 N ATOM 12 C5 DG A 1 8.377 18.145 7.506 1.00 82.99 C ATOM 13 C6 DG A 1 8.751 19.272 6.736 1.00 86.06 C ATOM 14 O6 DG A 1 8.017 20.124 6.212 1.00 90.18 O ATOM 15 N1 DG A 1 10.134 19.357 6.576 1.00 84.88 N ATOM 16 C2 DG A 1 11.038 18.471 7.113 1.00 86.29 C ATOM 17 N2 DG A 1 12.335 18.719 6.860 1.00 81.96 N ATOM 18 N3 DG A 1 10.696 17.413 7.852 1.00 82.34 N ATOM 19 C4 DG A 1 9.357 17.314 8.002 1.00 82.16 C ATOM 20 P DG A 2 9.420 16.723 13.921 1.00 99.36 P ATOM 21 OP1 DG A 2 9.778 16.269 15.283 1.00100.98 O ATOM 22 OP2 DG A 2 8.204 17.542 13.672 1.00 97.79 O ATOM 23 O5' DG A 2 10.677 17.484 13.305 1.00 94.29 O ATOM 24 C5' DG A 2 11.991 17.108 13.673 1.00 91.34 C ATOM 25 C4' DG A 2 12.993 17.681 12.684 1.00 95.15 C ATOM 26 O4' DG A 2 12.408 17.686 11.358 1.00 95.00 O ATOM 27 C3' DG A 2 13.364 19.129 12.920 1.00 95.23 C ATOM 28 O3' DG A 2 14.387 19.215 13.874 1.00 98.09 O ATOM 29 C2' DG A 2 13.847 19.563 11.542 1.00 90.37 C ATOM 30 C1' DG A 2 12.870 18.819 10.629 1.00 91.75 C ATOM 31 N9 DG A 2 11.705 19.619 10.222 1.00 90.15 N ATOM 32 C8 DG A 2 10.391 19.425 10.603 1.00 87.18 C ATOM 33 N7 DG A 2 9.564 20.290 10.078 1.00 86.83 N ATOM 34 C5 DG A 2 10.378 21.117 9.308 1.00 85.00 C ATOM 35 C6 DG A 2 10.038 22.240 8.505 1.00 87.93 C ATOM 36 O6 DG A 2 8.912 22.736 8.316 1.00 88.95 O ATOM 37 N1 DG A 2 11.162 22.793 7.879 1.00 85.35 N ATOM 38 C2 DG A 2 12.452 22.325 8.028 1.00 87.54 C ATOM 39 N2 DG A 2 13.400 22.992 7.356 1.00 85.08 N ATOM 40 N3 DG A 2 12.786 21.269 8.780 1.00 82.78 N ATOM 41 C4 DG A 2 11.700 20.717 9.383 1.00 84.20 C ATOM 42 P DA A 3 14.507 20.532 14.777 1.00 96.66 P ATOM 43 OP1 DA A 3 15.533 20.264 15.815 1.00100.78 O ATOM 44 OP2 DA A 3 13.114 20.885 15.162 1.00 95.13 O ATOM 45 O5' DA A 3 15.131 21.618 13.791 1.00 93.01 O ATOM 46 C5' DA A 3 16.422 21.388 13.229 1.00 93.19 C ATOM 47 C4' DA A 3 16.796 22.496 12.265 1.00 95.98 C ATOM 48 O4' DA A 3 15.937 22.438 11.097 1.00 91.89 O ATOM 49 C3' DA A 3 16.589 23.890 12.807 1.00 95.87 C ATOM 50 O3' DA A 3 17.699 24.297 13.570 1.00 99.38 O ATOM 51 C2' DA A 3 16.445 24.700 11.536 1.00 94.11 C ATOM 52 C1' DA A 3 15.588 23.760 10.697 1.00 93.23 C ATOM 53 N9 DA A 3 14.135 23.950 10.875 1.00 93.58 N ATOM 54 C8 DA A 3 13.299 23.257 11.718 1.00 89.41 C ATOM 55 N7 DA A 3 12.039 23.640 11.648 1.00 87.74 N ATOM 56 C5 DA A 3 12.047 24.657 10.704 1.00 82.19 C ATOM 57 C6 DA A 3 11.025 25.474 10.181 1.00 82.86 C ATOM 58 N6 DA A 3 9.750 25.376 10.553 1.00 82.35 N ATOM 59 N1 DA A 3 11.365 26.391 9.246 1.00 85.13 N ATOM 60 C2 DA A 3 12.652 26.477 8.867 1.00 86.64 C ATOM 61 N3 DA A 3 13.703 25.761 9.289 1.00 86.73 N ATOM 62 C4 DA A 3 13.328 24.860 10.212 1.00 85.51 C ATOM 63 P DC A 4 17.436 25.178 14.887 1.00104.48 P ATOM 64 OP1 DC A 4 18.724 25.286 15.617 1.00109.81 O ATOM 65 OP2 DC A 4 16.247 24.608 15.581 1.00 88.04 O ATOM 66 O5' DC A 4 17.074 26.615 14.276 1.00 92.98 O ATOM 67 C5' DC A 4 18.063 27.309 13.580 1.00 93.67 C ATOM 68 C4' DC A 4 17.460 28.368 12.694 1.00 94.43 C ATOM 69 O4' DC A 4 16.480 27.781 11.801 1.00 94.56 O ATOM 70 C3' DC A 4 16.681 29.443 13.410 1.00 92.30 C ATOM 71 O3' DC A 4 17.563 30.369 13.990 1.00 96.87 O ATOM 72 C2' DC A 4 15.925 30.042 12.228 1.00 89.16 C ATOM 73 C1' DC A 4 15.498 28.767 11.491 1.00 89.07 C ATOM 74 N1 DC A 4 14.154 28.283 11.932 1.00 85.25 N ATOM 75 C2 DC A 4 13.021 28.876 11.390 1.00 85.17 C ATOM 76 O2 DC A 4 13.170 29.766 10.534 1.00 87.41 O ATOM 77 N3 DC A 4 11.791 28.460 11.805 1.00 82.13 N ATOM 78 C4 DC A 4 11.684 27.497 12.721 1.00 80.61 C ATOM 79 N4 DC A 4 10.452 27.120 13.098 1.00 73.92 N ATOM 80 C5 DC A 4 12.838 26.887 13.305 1.00 83.87 C ATOM 81 C6 DC A 4 14.043 27.307 12.886 1.00 85.59 C ATOM 82 P DC A 5 17.101 31.233 15.260 1.00 95.83 P ATOM 83 OP1 DC A 5 18.317 31.921 15.744 1.00103.17 O ATOM 84 OP2 DC A 5 16.328 30.373 16.186 1.00 96.89 O ATOM 85 O5' DC A 5 16.097 32.314 14.644 1.00 88.86 O ATOM 86 C5' DC A 5 16.535 33.161 13.604 1.00 87.80 C ATOM 87 C4' DC A 5 15.385 33.997 13.085 1.00 87.15 C ATOM 88 O4' DC A 5 14.484 33.167 12.319 1.00 86.65 O ATOM 89 C3' DC A 5 14.494 34.598 14.157 1.00 86.37 C ATOM 90 O3' DC A 5 15.076 35.759 14.653 1.00 88.81 O ATOM 91 C2' DC A 5 13.253 34.909 13.338 1.00 88.18 C ATOM 92 C1' DC A 5 13.158 33.654 12.473 1.00 85.14 C ATOM 93 N1 DC A 5 12.315 32.599 13.100 1.00 81.33 N ATOM 94 C2 DC A 5 10.936 32.661 12.928 1.00 82.78 C ATOM 95 O2 DC A 5 10.462 33.583 12.246 1.00 82.01 O ATOM 96 N3 DC A 5 10.153 31.715 13.514 1.00 81.65 N ATOM 97 C4 DC A 5 10.707 30.750 14.244 1.00 80.57 C ATOM 98 N4 DC A 5 9.895 29.840 14.782 1.00 78.12 N ATOM 99 C5 DC A 5 12.122 30.672 14.444 1.00 79.95 C ATOM 100 C6 DC A 5 12.881 31.613 13.863 1.00 81.69 C ATOM 101 P DC A 6 14.674 36.314 16.095 1.00 86.50 P ATOM 102 OP1 DC A 6 15.556 37.473 16.303 1.00 94.32 O ATOM 103 OP2 DC A 6 14.609 35.182 17.050 1.00 87.59 O ATOM 104 O5' DC A 6 13.200 36.878 15.911 1.00 82.75 O ATOM 105 C5' DC A 6 12.974 37.965 15.072 1.00 80.99 C ATOM 106 C4' DC A 6 11.507 38.330 15.095 1.00 84.55 C ATOM 107 O4' DC A 6 10.725 37.278 14.481 1.00 83.24 O ATOM 108 C3' DC A 6 10.920 38.501 16.480 1.00 84.22 C ATOM 109 O3' DC A 6 11.143 39.820 16.891 1.00 86.44 O ATOM 110 C2' DC A 6 9.436 38.250 16.225 1.00 84.75 C ATOM 111 C1' DC A 6 9.464 37.189 15.116 1.00 84.40 C ATOM 112 N1 DC A 6 9.294 35.810 15.635 1.00 82.54 N ATOM 113 C2 DC A 6 8.020 35.338 15.893 1.00 83.42 C ATOM 114 O2 DC A 6 7.058 36.078 15.675 1.00 87.31 O ATOM 115 N3 DC A 6 7.868 34.081 16.376 1.00 85.45 N ATOM 116 C4 DC A 6 8.934 33.313 16.592 1.00 84.24 C ATOM 117 N4 DC A 6 8.735 32.074 17.076 1.00 79.73 N ATOM 118 C5 DC A 6 10.252 33.781 16.330 1.00 83.57 C ATOM 119 C6 DC A 6 10.383 35.025 15.859 1.00 84.18 C HETATM 120 N1 UFP A 7 7.010 37.244 19.598 1.00 87.02 N HETATM 121 C2 UFP A 7 6.217 36.125 19.939 1.00 87.97 C HETATM 122 N3 UFP A 7 6.849 34.866 19.973 1.00 88.41 N HETATM 123 C4 UFP A 7 8.202 34.656 19.689 1.00 86.85 C HETATM 124 C5 UFP A 7 8.926 35.873 19.358 1.00 84.50 C HETATM 125 C6 UFP A 7 8.355 37.099 19.316 1.00 84.26 C HETATM 126 O2 UFP A 7 5.019 36.201 20.207 1.00 89.81 O HETATM 127 O4 UFP A 7 8.663 33.515 19.746 1.00 84.64 O HETATM 128 F5 UFP A 7 10.222 35.720 19.085 1.00 84.75 F HETATM 129 C1' UFP A 7 6.305 38.607 19.586 1.00 87.74 C HETATM 130 C2' UFP A 7 6.363 39.283 20.962 1.00 88.01 C HETATM 131 C3' UFP A 7 7.713 40.022 20.854 1.00 87.09 C HETATM 132 C4' UFP A 7 7.550 40.539 19.421 1.00 89.99 C HETATM 133 O3' UFP A 7 7.671 41.070 21.797 1.00 93.88 O HETATM 134 O4' UFP A 7 6.974 39.445 18.695 1.00 89.19 O HETATM 135 C5' UFP A 7 8.914 40.979 18.794 1.00 85.14 C HETATM 136 O5' UFP A 7 9.844 40.123 19.218 1.00 83.16 O HETATM 137 P UFP A 7 11.462 40.161 18.421 1.00 82.98 P HETATM 138 O1P UFP A 7 11.856 41.605 18.585 1.00 91.47 O HETATM 139 O2P UFP A 7 12.286 39.111 19.124 1.00 81.87 O ATOM 140 P DG A 8 8.412 40.940 23.222 1.00 95.11 P ATOM 141 OP1 DG A 8 8.254 42.267 23.841 1.00102.32 O ATOM 142 OP2 DG A 8 9.789 40.406 23.078 1.00 91.57 O ATOM 143 O5' DG A 8 7.544 39.856 24.023 1.00 89.95 O ATOM 144 C5' DG A 8 6.220 40.166 24.417 1.00 91.40 C ATOM 145 C4' DG A 8 5.448 38.915 24.802 1.00 89.66 C ATOM 146 O4' DG A 8 5.395 38.003 23.682 1.00 92.40 O ATOM 147 C3' DG A 8 6.051 38.069 25.896 1.00 90.34 C ATOM 148 O3' DG A 8 5.815 38.660 27.166 1.00 97.05 O ATOM 149 C2' DG A 8 5.237 36.796 25.698 1.00 88.84 C ATOM 150 C1' DG A 8 5.256 36.683 24.174 1.00 88.01 C ATOM 151 N9 DG A 8 6.382 35.888 23.712 1.00 86.25 N ATOM 152 C8 DG A 8 7.567 36.339 23.183 1.00 85.89 C ATOM 153 N7 DG A 8 8.407 35.375 22.900 1.00 89.21 N ATOM 154 C5 DG A 8 7.740 34.216 23.303 1.00 86.04 C ATOM 155 C6 DG A 8 8.142 32.858 23.254 1.00 82.19 C ATOM 156 O6 DG A 8 9.209 32.381 22.845 1.00 81.27 O ATOM 157 N1 DG A 8 7.157 32.015 23.751 1.00 84.11 N ATOM 158 C2 DG A 8 5.937 32.426 24.239 1.00 85.06 C ATOM 159 N2 DG A 8 5.114 31.460 24.695 1.00 83.17 N ATOM 160 N3 DG A 8 5.554 33.687 24.291 1.00 85.15 N ATOM 161 C4 DG A 8 6.500 34.523 23.808 1.00 85.36 C ATOM 162 P DG A 9 6.839 38.436 28.388 1.00100.66 P ATOM 163 OP1 DG A 9 6.300 39.283 29.479 1.00105.43 O ATOM 164 OP2 DG A 9 8.237 38.672 27.958 1.00 96.26 O ATOM 165 O5' DG A 9 6.653 36.881 28.762 1.00 93.59 O ATOM 166 C5' DG A 9 5.376 36.418 29.198 1.00 92.08 C ATOM 167 C4' DG A 9 5.322 34.904 29.296 1.00 88.78 C ATOM 168 O4' DG A 9 5.596 34.325 28.012 1.00 88.60 O ATOM 169 C3' DG A 9 6.344 34.255 30.215 1.00 91.77 C ATOM 170 O3' DG A 9 5.917 34.344 31.589 1.00 90.41 O ATOM 171 C2' DG A 9 6.300 32.815 29.703 1.00 88.89 C ATOM 172 C1' DG A 9 6.115 33.019 28.185 1.00 87.98 C ATOM 173 N9 DG A 9 7.370 32.916 27.438 1.00 84.71 N ATOM 174 C8 DG A 9 8.122 33.951 26.932 1.00 87.05 C ATOM 175 N7 DG A 9 9.214 33.556 26.327 1.00 87.01 N ATOM 176 C5 DG A 9 9.191 32.173 26.459 1.00 83.52 C ATOM 177 C6 DG A 9 10.114 31.202 26.011 1.00 80.25 C ATOM 178 O6 DG A 9 11.162 31.374 25.398 1.00 79.69 O ATOM 179 N1 DG A 9 9.718 29.916 26.350 1.00 82.43 N ATOM 180 C2 DG A 9 8.576 29.604 27.038 1.00 82.57 C ATOM 181 N2 DG A 9 8.369 28.304 27.264 1.00 85.24 N ATOM 182 N3 DG A 9 7.696 30.501 27.471 1.00 80.73 N ATOM 183 C4 DG A 9 8.067 31.763 27.144 1.00 83.51 C ATOM 184 P DT A 10 6.974 34.187 32.797 1.00 92.90 P ATOM 185 OP1 DT A 10 6.220 34.496 34.030 1.00 98.36 O ATOM 186 OP2 DT A 10 8.217 34.939 32.504 1.00 92.34 O ATOM 187 O5' DT A 10 7.370 32.643 32.790 1.00 83.44 O ATOM 188 C5' DT A 10 6.445 31.667 33.184 1.00 85.07 C ATOM 189 C4' DT A 10 7.026 30.296 32.935 1.00 89.30 C ATOM 190 O4' DT A 10 7.471 30.225 31.570 1.00 91.80 O ATOM 191 C3' DT A 10 8.275 29.990 33.727 1.00 92.77 C ATOM 192 O3' DT A 10 7.932 29.467 34.967 1.00100.83 O ATOM 193 C2' DT A 10 8.952 28.927 32.872 1.00 93.56 C ATOM 194 C1' DT A 10 8.545 29.314 31.471 1.00 87.71 C ATOM 195 N1 DT A 10 9.628 29.931 30.680 1.00 86.36 N ATOM 196 C2 DT A 10 10.488 29.108 30.007 1.00 88.57 C ATOM 197 O2 DT A 10 10.418 27.894 30.067 1.00 92.83 O ATOM 198 N3 DT A 10 11.436 29.751 29.253 1.00 85.23 N ATOM 199 C4 DT A 10 11.603 31.110 29.113 1.00 83.27 C ATOM 200 O4 DT A 10 12.496 31.588 28.425 1.00 87.32 O ATOM 201 C5 DT A 10 10.664 31.928 29.842 1.00 86.80 C ATOM 202 C7 DT A 10 10.758 33.424 29.773 1.00 82.26 C ATOM 203 C6 DT A 10 9.724 31.305 30.585 1.00 87.77 C ATOM 204 P DC A 11 9.060 29.315 36.095 1.00104.08 P ATOM 205 OP1 DC A 11 8.337 28.757 37.262 1.00 90.64 O ATOM 206 OP2 DC A 11 9.779 30.614 36.165 1.00100.18 O ATOM 207 O5' DC A 11 10.107 28.258 35.479 1.00 96.98 O ATOM 208 C5' DC A 11 9.893 26.866 35.635 1.00 97.71 C ATOM 209 C4' DC A 11 10.978 26.089 34.926 1.00 94.63 C ATOM 210 O4' DC A 11 11.114 26.614 33.604 1.00 92.67 O ATOM 211 C3' DC A 11 12.377 26.239 35.506 1.00 94.39 C ATOM 212 O3' DC A 11 12.583 25.329 36.550 1.00 98.48 O ATOM 213 C2' DC A 11 13.255 25.876 34.315 1.00 97.99 C ATOM 214 C1' DC A 11 12.431 26.368 33.131 1.00 92.39 C ATOM 215 N1 DC A 11 12.970 27.604 32.537 1.00 84.92 N ATOM 216 C2 DC A 11 14.001 27.506 31.623 1.00 85.51 C ATOM 217 O2 DC A 11 14.422 26.385 31.329 1.00 87.60 O ATOM 218 N3 DC A 11 14.503 28.638 31.066 1.00 87.58 N ATOM 219 C4 DC A 11 14.012 29.826 31.419 1.00 86.81 C ATOM 220 N4 DC A 11 14.540 30.913 30.849 1.00 84.57 N ATOM 221 C5 DC A 11 12.963 29.948 32.379 1.00 87.17 C ATOM 222 C6 DC A 11 12.483 28.820 32.915 1.00 87.86 C ATOM 223 P DC A 12 13.855 25.509 37.529 1.00110.45 P ATOM 224 OP1 DC A 12 13.652 24.550 38.640 1.00110.30 O ATOM 225 OP2 DC A 12 14.048 26.947 37.843 1.00100.14 O ATOM 226 O5' DC A 12 15.112 25.065 36.637 1.00 98.08 O ATOM 227 C5' DC A 12 15.296 23.704 36.279 1.00 97.83 C ATOM 228 C4' DC A 12 16.505 23.559 35.377 1.00 95.40 C ATOM 229 O4' DC A 12 16.282 24.302 34.160 1.00 95.25 O ATOM 230 C3' DC A 12 17.782 24.151 35.934 1.00 94.95 C ATOM 231 O3' DC A 12 18.411 23.224 36.812 1.00106.73 O ATOM 232 C2' DC A 12 18.600 24.365 34.672 1.00 90.29 C ATOM 233 C1' DC A 12 17.524 24.772 33.662 1.00 92.15 C ATOM 234 N1 DC A 12 17.439 26.251 33.443 1.00 88.49 N ATOM 235 C2 DC A 12 18.325 26.847 32.556 1.00 87.56 C ATOM 236 O2 DC A 12 19.148 26.131 31.976 1.00 88.57 O ATOM 237 N3 DC A 12 18.256 28.190 32.347 1.00 88.67 N ATOM 238 C4 DC A 12 17.350 28.922 33.003 1.00 87.02 C ATOM 239 N4 DC A 12 17.320 30.241 32.762 1.00 84.30 N ATOM 240 C5 DC A 12 16.430 28.329 33.922 1.00 84.69 C ATOM 241 C6 DC A 12 16.511 27.003 34.113 1.00 87.82 C TER 242 DC A 12 HETATM 243 CU CU A 101 5.984 33.652 16.838 0.73 82.37 CU CONECT 109 137 CONECT 115 243 CONECT 120 121 125 129 CONECT 121 120 122 126 CONECT 122 121 123 CONECT 123 122 124 127 CONECT 124 123 125 128 CONECT 125 120 124 CONECT 126 121 CONECT 127 123 CONECT 128 124 CONECT 129 120 130 134 CONECT 130 129 131 CONECT 131 130 132 133 CONECT 132 131 134 135 CONECT 133 131 140 CONECT 134 129 132 CONECT 135 132 136 CONECT 136 135 137 CONECT 137 109 136 138 139 CONECT 138 137 CONECT 139 137 CONECT 140 133 CONECT 243 115 MASTER 223 0 2 0 0 0 0 6 242 1 24 1 END