HEADER RNA 05-DEC-24 9MDY TITLE 16MER SELF-COMPLEMENTARY DUPLEX RNA WITH S(2)U:A PAIR SEQUENCE 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA STRAND WITH S(2)U:A PAIR SEQUENCE 2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS 2-THIOURIDINE, NUCLEOBASE MODIFICATION, NON-CANONICAL BASE PAIR, RNA, KEYWDS 2 ORGIN OF LIFE EXPDTA X-RAY DIFFRACTION AUTHOR Z.FANG,X.JIA,J.W.SZOSTAK REVDAT 2 28-MAY-25 9MDY 1 JRNL REVDAT 1 14-MAY-25 9MDY 0 JRNL AUTH Z.FANG,X.JIA,Y.XING,J.W.SZOSTAK JRNL TITL NONENZYMATIC RNA COPYING WITH A POTENTIALLY PRIMORDIAL JRNL TITL 2 GENETIC ALPHABET. JRNL REF PROC.NATL.ACAD.SCI.USA V. 122 20122 2025 JRNL REFN ESSN 1091-6490 JRNL PMID 40397670 JRNL DOI 10.1073/PNAS.2505720122 REMARK 2 REMARK 2 RESOLUTION. 1.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 8856 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.664 REMARK 3 FREE R VALUE TEST SET COUNT : 413 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.36 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.40 REMARK 3 REFLECTION IN BIN (WORKING SET) : 554 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 34 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 336 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.00400 REMARK 3 B22 (A**2) : -0.00400 REMARK 3 B33 (A**2) : 0.01300 REMARK 3 B12 (A**2) : -0.00200 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.066 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.069 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.046 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.108 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 375 ; 0.013 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 158 ; 0.033 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 574 ; 2.250 ; 1.890 REMARK 3 BOND ANGLES OTHERS (DEGREES): 384 ; 3.073 ; 1.786 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 77 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 185 ; 0.029 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 59 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 38 ; 0.087 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 61 ; 0.167 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 140 ; 0.250 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 63 ; 0.223 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.079 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 375 ; 1.423 ; 1.343 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 376 ; 1.421 ; 1.342 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 574 ; 1.978 ; 2.444 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 575 ; 1.976 ; 2.442 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9MDY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-DEC-24. REMARK 100 THE DEPOSITION ID IS D_1000290714. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-OCT-24 REMARK 200 TEMPERATURE (KELVIN) : 99 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97741 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8888 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.360 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.200 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 49.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.49300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE HEXAHYDRATE, REMARK 280 0.1 M HEPES SODIUM PH 7.5, 30% V/V POLYETHYLENE GLYCOL 400, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 20.49750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 11.83424 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 40.97333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 20.49750 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 11.83424 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 40.97333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 20.49750 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 11.83424 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 40.97333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 20.49750 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 11.83424 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 40.97333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 20.49750 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 11.83424 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 40.97333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 20.49750 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 11.83424 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 40.97333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 23.66847 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 81.94667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 23.66847 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 81.94667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 23.66847 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 81.94667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 23.66847 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 81.94667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 23.66847 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 81.94667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 23.66847 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 81.94667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 103 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 235 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 242 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 257 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 284 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 285 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 287 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 218 O HOH A 280 1.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 A A 3 O5' - P - OP2 ANGL. DEV. = -5.4 DEGREES REMARK 500 G A 7 O5' - P - OP2 ANGL. DEV. = -18.9 DEGREES REMARK 500 C A 10 O3' - P - OP2 ANGL. DEV. = 7.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 C A 15 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C A 13 O2' REMARK 620 2 C A 13 O2' 0.0 REMARK 620 3 HOH A 257 O 130.4 130.4 REMARK 620 4 HOH A 257 O 130.4 130.4 0.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 217 O REMARK 620 2 HOH A 219 O 105.5 REMARK 620 3 HOH A 248 O 90.6 91.3 REMARK 620 4 HOH A 295 O 82.7 168.7 96.4 REMARK 620 5 HOH A 299 O 171.2 83.2 90.7 88.5 REMARK 620 6 HOH A 300 O 91.1 82.4 173.6 89.9 88.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 211 O REMARK 620 2 HOH A 236 O 95.6 REMARK 620 3 HOH A 280 O 85.1 96.2 REMARK 620 4 HOH A 286 O 77.8 168.9 74.6 REMARK 620 N 1 2 3 DBREF 9MDY A 1 16 PDB 9MDY 9MDY 1 16 SEQRES 1 A 16 A G A G A A G A SUR C U U C SEQRES 2 A 16 U C U HET SUR A 9 20 HET MG A 101 1 HET MG A 102 1 HET MG A 103 1 HETNAM SUR 1-(BETA-D-RIBOFURANOSYL)-2-THIO-URACIL-5'-PHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 1 SUR C9 H13 N2 O8 P S FORMUL 2 MG 3(MG 2+) FORMUL 5 HOH *100(H2 O) LINK O3' A A 8 P SUR A 9 1555 1555 1.61 LINK O3' SUR A 9 P C A 10 1555 1555 1.59 LINK O2' C A 13 MG MG A 103 1555 1555 2.59 LINK O2' C A 13 MG MG A 103 1555 2665 2.59 LINK MG MG A 101 O HOH A 217 1555 1555 2.18 LINK MG MG A 101 O HOH A 219 1555 1555 2.18 LINK MG MG A 101 O HOH A 248 1555 1555 1.94 LINK MG MG A 101 O HOH A 295 1555 1555 2.10 LINK MG MG A 101 O HOH A 299 1555 1555 1.96 LINK MG MG A 101 O HOH A 300 1555 1555 2.23 LINK MG MG A 102 O HOH A 211 1555 1555 1.87 LINK MG MG A 102 O HOH A 236 1555 1555 2.09 LINK MG MG A 102 O HOH A 280 1555 1555 2.03 LINK MG MG A 102 O HOH A 286 1555 1555 2.26 LINK MG MG A 103 O HOH A 257 1555 1555 2.98 LINK MG MG A 103 O HOH A 257 1555 2665 2.98 CRYST1 40.995 40.995 122.920 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024393 0.014083 0.000000 0.00000 SCALE2 0.000000 0.028167 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008135 0.00000 ATOM 1 O5' A A 1 1.023 12.738 15.640 1.00 21.11 O0 ATOM 2 C5' A A 1 -0.233 13.393 15.479 1.00 17.16 C0 ATOM 3 C4' A A 1 -0.197 14.792 16.048 1.00 14.75 C0 ATOM 4 O4' A A 1 0.323 14.805 17.403 1.00 12.68 O0 ATOM 5 C3' A A 1 0.714 15.777 15.332 1.00 13.39 C0 ATOM 6 O3' A A 1 0.018 16.366 14.263 1.00 13.29 O0 ATOM 7 C2' A A 1 0.918 16.850 16.390 1.00 12.18 C0 ATOM 8 O2' A A 1 -0.191 17.685 16.618 1.00 12.58 O0 ATOM 9 C1' A A 1 1.156 15.946 17.579 1.00 10.52 C0 ATOM 10 N9 A A 1 2.514 15.470 17.802 1.00 10.16 N0 ATOM 11 C8 A A 1 2.991 14.180 17.687 1.00 10.27 C0 ATOM 12 N7 A A 1 4.222 14.018 18.099 1.00 11.58 N0 ATOM 13 C5 A A 1 4.574 15.301 18.536 1.00 9.16 C0 ATOM 14 C6 A A 1 5.735 15.800 19.124 1.00 9.56 C0 ATOM 15 N6 A A 1 6.786 15.085 19.415 1.00 10.27 N0 ATOM 16 N1 A A 1 5.768 17.095 19.439 1.00 8.89 N0 ATOM 17 C2 A A 1 4.725 17.865 19.173 1.00 8.47 C0 ATOM 18 N3 A A 1 3.559 17.505 18.670 1.00 8.87 N0 ATOM 19 C4 A A 1 3.547 16.197 18.355 1.00 9.01 C0 ATOM 20 P G A 2 0.796 16.852 12.937 1.00 13.00 P0 ATOM 21 OP1 G A 2 -0.222 17.165 11.897 1.00 15.58 O0 ATOM 22 OP2 G A 2 1.802 15.819 12.687 1.00 14.69 O0 ATOM 23 O5' G A 2 1.528 18.185 13.379 1.00 13.55 O0 ATOM 24 C5' G A 2 0.751 19.330 13.620 1.00 14.03 C0 ATOM 25 C4' G A 2 1.654 20.435 14.090 1.00 12.74 C0 ATOM 26 O4' G A 2 2.166 20.045 15.386 1.00 11.74 O0 ATOM 27 C3' G A 2 2.930 20.618 13.287 1.00 13.76 C0 ATOM 28 O3' G A 2 2.667 21.447 12.193 1.00 14.28 O0 ATOM 29 C2' G A 2 3.790 21.343 14.293 1.00 12.57 C0 ATOM 30 O2' G A 2 3.401 22.660 14.546 1.00 14.08 O0 ATOM 31 C1' G A 2 3.513 20.492 15.518 1.00 10.51 C0 ATOM 32 N9 G A 2 4.386 19.352 15.631 1.00 9.53 N0 ATOM 33 C8 G A 2 4.126 18.050 15.277 1.00 9.51 C0 ATOM 34 N7 G A 2 5.088 17.214 15.549 1.00 9.31 N0 ATOM 35 C5 G A 2 6.057 18.018 16.142 1.00 8.22 C0 ATOM 36 C6 G A 2 7.324 17.686 16.626 1.00 8.10 C0 ATOM 37 O6 G A 2 7.825 16.585 16.702 1.00 8.94 O0 ATOM 38 N1 G A 2 8.040 18.805 17.063 1.00 7.71 N0 ATOM 39 C2 G A 2 7.575 20.094 17.036 1.00 7.73 C0 ATOM 40 N2 G A 2 8.406 21.063 17.467 1.00 8.78 N0 ATOM 41 N3 G A 2 6.356 20.413 16.627 1.00 8.50 N0 ATOM 42 C4 G A 2 5.649 19.330 16.198 1.00 8.30 C0 ATOM 43 P A A 3 3.519 21.252 10.855 1.00 15.52 P0 ATOM 44 OP1 A A 3 2.936 22.137 9.802 1.00 16.50 O0 ATOM 45 OP2 A A 3 3.782 19.863 10.522 1.00 15.70 O0 ATOM 46 O5' A A 3 4.996 21.728 11.290 1.00 13.11 O0 ATOM 47 C5' A A 3 5.195 23.106 11.627 1.00 12.58 C0 ATOM 48 C4' A A 3 6.578 23.248 12.205 1.00 11.87 C0 ATOM 49 O4' A A 3 6.699 22.441 13.395 1.00 11.09 O0 ATOM 50 C3' A A 3 7.711 22.708 11.363 1.00 11.76 C0 ATOM 51 O3' A A 3 7.997 23.645 10.349 1.00 12.14 O0 ATOM 52 C2' A A 3 8.805 22.646 12.410 1.00 10.74 C0 ATOM 53 O2' A A 3 9.272 23.925 12.752 1.00 11.54 O0 ATOM 54 C1' A A 3 8.025 21.990 13.542 1.00 9.82 C0 ATOM 55 N9 A A 3 8.025 20.551 13.502 1.00 9.47 N0 ATOM 56 C8 A A 3 7.065 19.718 13.000 1.00 9.78 C0 ATOM 57 N7 A A 3 7.358 18.460 13.098 1.00 9.27 N0 ATOM 58 C5 A A 3 8.625 18.450 13.684 1.00 8.60 C0 ATOM 59 C6 A A 3 9.506 17.404 14.053 1.00 8.65 C0 ATOM 60 N6 A A 3 9.223 16.109 13.947 1.00 9.34 N0 ATOM 61 N1 A A 3 10.678 17.765 14.627 1.00 8.63 N0 ATOM 62 C2 A A 3 10.983 19.043 14.790 1.00 9.01 C0 ATOM 63 N3 A A 3 10.211 20.102 14.528 1.00 8.09 N0 ATOM 64 C4 A A 3 9.058 19.737 13.932 1.00 8.76 C0 ATOM 65 P G A 4 8.622 23.135 8.986 1.00 13.71 P0 ATOM 66 OP1 G A 4 8.567 24.266 8.003 1.00 18.50 O0 ATOM 67 OP2 G A 4 7.994 21.863 8.584 1.00 16.14 O0 ATOM 68 O5' G A 4 10.129 22.818 9.393 1.00 12.67 O0 ATOM 69 C5' G A 4 11.029 23.876 9.768 1.00 12.29 C0 ATOM 70 C4' G A 4 12.356 23.295 10.194 1.00 11.94 C0 ATOM 71 O4' G A 4 12.176 22.523 11.400 1.00 11.65 O0 ATOM 72 C3' G A 4 12.996 22.269 9.262 1.00 13.32 C0 ATOM 73 O3' G A 4 13.553 22.894 8.126 1.00 17.31 O0 ATOM 74 C2' G A 4 14.019 21.652 10.210 1.00 12.62 C0 ATOM 75 O2' G A 4 15.078 22.504 10.553 1.00 14.38 O0 ATOM 76 C1' G A 4 13.144 21.492 11.435 1.00 11.71 C0 ATOM 77 N9 G A 4 12.428 20.237 11.411 1.00 10.77 N0 ATOM 78 C8 G A 4 11.153 20.023 10.964 1.00 10.43 C0 ATOM 79 N7 G A 4 10.763 18.784 11.061 1.00 12.15 N0 ATOM 80 C5 G A 4 11.895 18.103 11.524 1.00 10.12 C0 ATOM 81 C6 G A 4 12.085 16.723 11.811 1.00 10.19 C0 ATOM 82 O6 G A 4 11.270 15.809 11.658 1.00 11.63 O0 ATOM 83 N1 G A 4 13.396 16.479 12.231 1.00 10.17 N0 ATOM 84 C2 G A 4 14.373 17.434 12.409 1.00 11.74 C0 ATOM 85 N2 G A 4 15.597 17.054 12.783 1.00 11.43 N0 ATOM 86 N3 G A 4 14.179 18.733 12.157 1.00 10.98 N0 ATOM 87 C4 G A 4 12.936 18.978 11.716 1.00 10.17 C0 ATOM 88 P A A 5 13.562 22.094 6.738 1.00 17.44 P0 ATOM 89 OP1 A A 5 14.181 23.082 5.814 1.00 20.63 O0 ATOM 90 OP2 A A 5 12.256 21.475 6.413 1.00 18.30 O0 ATOM 91 O5' A A 5 14.591 20.909 7.022 1.00 16.03 O0 ATOM 92 C5' A A 5 15.975 21.226 7.389 1.00 15.70 C0 ATOM 93 C4' A A 5 16.725 19.936 7.627 1.00 16.32 C0 ATOM 94 O4' A A 5 16.242 19.292 8.823 1.00 16.75 O0 ATOM 95 C3' A A 5 16.543 18.832 6.588 1.00 17.60 C0 ATOM 96 O3' A A 5 17.325 19.109 5.444 1.00 18.37 O0 ATOM 97 C2' A A 5 17.005 17.611 7.375 1.00 15.79 C0 ATOM 98 O2' A A 5 18.410 17.528 7.500 1.00 18.43 O0 ATOM 99 C1' A A 5 16.294 17.889 8.696 1.00 15.77 C0 ATOM 100 N9 A A 5 14.952 17.312 8.720 1.00 15.01 N0 ATOM 101 C8 A A 5 13.740 17.908 8.460 1.00 14.10 C0 ATOM 102 N7 A A 5 12.734 17.081 8.503 1.00 14.35 N0 ATOM 103 C5 A A 5 13.314 15.861 8.808 1.00 12.82 C0 ATOM 104 C6 A A 5 12.780 14.581 8.961 1.00 13.84 C0 ATOM 105 N6 A A 5 11.493 14.336 8.892 1.00 14.57 N0 ATOM 106 N1 A A 5 13.638 13.559 9.204 1.00 13.12 N0 ATOM 107 C2 A A 5 14.940 13.835 9.276 1.00 14.87 C0 ATOM 108 N3 A A 5 15.549 14.996 9.137 1.00 14.76 N0 ATOM 109 C4 A A 5 14.680 15.989 8.898 1.00 13.98 C0 ATOM 110 P A A 6 16.787 18.656 4.009 1.00 20.34 P0 ATOM 111 OP1 A A 6 17.696 19.399 3.079 1.00 24.00 O0 ATOM 112 OP2 A A 6 15.332 18.816 3.805 1.00 20.14 O0 ATOM 113 O5' A A 6 16.979 17.076 3.923 1.00 18.27 O0 ATOM 114 C5' A A 6 18.319 16.548 4.082 1.00 18.05 C0 ATOM 115 C4' A A 6 18.220 15.054 4.267 1.00 16.96 C0 ATOM 116 O4' A A 6 17.543 14.787 5.520 1.00 16.00 O0 ATOM 117 C3' A A 6 17.385 14.258 3.278 1.00 18.11 C0 ATOM 118 O3' A A 6 18.160 14.079 2.123 1.00 19.36 O0 ATOM 119 C2' A A 6 17.209 12.954 4.053 1.00 15.91 C0 ATOM 120 O2' A A 6 18.397 12.222 4.133 1.00 17.28 O0 ATOM 121 C1' A A 6 16.854 13.555 5.420 1.00 16.05 C0 ATOM 122 N9 A A 6 15.417 13.783 5.548 1.00 16.02 N0 ATOM 123 C8 A A 6 14.706 14.941 5.375 1.00 15.83 C0 ATOM 124 N7 A A 6 13.403 14.804 5.509 1.00 16.71 N0 ATOM 125 C5 A A 6 13.258 13.454 5.781 1.00 14.89 C0 ATOM 126 C6 A A 6 12.124 12.646 6.050 1.00 16.28 C0 ATOM 127 N6 A A 6 10.882 13.090 6.065 1.00 18.55 N0 ATOM 128 N1 A A 6 12.324 11.326 6.262 1.00 14.91 N0 ATOM 129 C2 A A 6 13.559 10.849 6.283 1.00 16.79 C0 ATOM 130 N3 A A 6 14.694 11.498 6.024 1.00 16.48 N0 ATOM 131 C4 A A 6 14.475 12.807 5.797 1.00 16.47 C0 ATOM 132 P G A 7 17.461 13.780 0.722 1.00 22.71 P0 ATOM 133 OP1 G A 7 18.446 13.687 -0.392 1.00 28.91 O0 ATOM 134 OP2 G A 7 16.178 14.450 0.512 1.00 22.33 O0 ATOM 135 O5' G A 7 16.620 12.411 0.869 1.00 21.89 O0 ATOM 136 C5' G A 7 17.261 11.187 0.665 1.00 19.37 C0 ATOM 137 C4' G A 7 16.343 10.059 1.073 1.00 15.65 C0 ATOM 138 O4' G A 7 15.743 10.291 2.372 1.00 14.23 O0 ATOM 139 C3' G A 7 15.139 9.667 0.227 1.00 14.57 C0 ATOM 140 O3' G A 7 15.586 9.021 -0.930 1.00 14.45 O0 ATOM 141 C2' G A 7 14.545 8.633 1.175 1.00 12.75 C0 ATOM 142 O2' G A 7 15.355 7.482 1.258 1.00 14.15 O0 ATOM 143 C1' G A 7 14.583 9.474 2.448 1.00 13.19 C0 ATOM 144 N9 G A 7 13.403 10.308 2.641 1.00 12.44 N0 ATOM 145 C8 G A 7 13.308 11.677 2.573 1.00 11.16 C0 ATOM 146 N7 G A 7 12.100 12.128 2.810 1.00 11.89 N0 ATOM 147 C5 G A 7 11.373 10.977 3.100 1.00 11.58 C0 ATOM 148 C6 G A 7 10.027 10.820 3.498 1.00 11.72 C0 ATOM 149 O6 G A 7 9.169 11.695 3.641 1.00 13.82 O0 ATOM 150 N1 G A 7 9.704 9.484 3.716 1.00 11.31 N0 ATOM 151 C2 G A 7 10.533 8.412 3.565 1.00 11.42 C0 ATOM 152 N2 G A 7 10.039 7.176 3.776 1.00 12.50 N0 ATOM 153 N3 G A 7 11.802 8.562 3.208 1.00 11.64 N0 ATOM 154 C4 G A 7 12.152 9.855 3.016 1.00 12.18 C0 ATOM 155 P A A 8 14.662 8.852 -2.236 1.00 15.27 P0 ATOM 156 OP1 A A 8 15.559 8.427 -3.351 1.00 17.74 O0 ATOM 157 OP2 A A 8 13.825 10.050 -2.428 1.00 17.76 O0 ATOM 158 O5' A A 8 13.635 7.698 -1.852 1.00 16.32 O0 ATOM 159 C5' A A 8 14.114 6.372 -1.672 1.00 16.76 C0 ATOM 160 C4' A A 8 12.946 5.501 -1.279 1.00 14.65 C0 ATOM 161 O4' A A 8 12.395 5.910 0.005 1.00 14.02 O0 ATOM 162 C3' A A 8 11.743 5.577 -2.222 1.00 15.56 C0 ATOM 163 O3' A A 8 12.000 4.740 -3.332 1.00 16.11 O0 ATOM 164 C2' A A 8 10.658 5.001 -1.327 1.00 15.24 C0 ATOM 165 O2' A A 8 10.768 3.610 -1.106 1.00 18.06 O0 ATOM 166 C1' A A 8 10.984 5.745 -0.042 1.00 14.44 C0 ATOM 167 N9 A A 8 10.386 7.073 0.056 1.00 12.30 N0 ATOM 168 C8 A A 8 10.995 8.287 -0.151 1.00 12.44 C0 ATOM 169 N7 A A 8 10.228 9.326 0.091 1.00 13.53 N0 ATOM 170 C5 A A 8 9.049 8.750 0.505 1.00 12.14 C0 ATOM 171 C6 A A 8 7.844 9.322 0.933 1.00 11.18 C0 ATOM 172 N6 A A 8 7.616 10.620 1.012 1.00 11.63 N0 ATOM 173 N1 A A 8 6.847 8.466 1.258 1.00 12.99 N0 ATOM 174 C2 A A 8 7.059 7.146 1.181 1.00 13.52 C0 ATOM 175 N3 A A 8 8.152 6.501 0.795 1.00 13.23 N0 ATOM 176 C4 A A 8 9.120 7.371 0.481 1.00 12.69 C0 HETATM 177 P SUR A 9 11.455 5.161 -4.786 1.00 18.31 P0 HETATM 178 OP1 SUR A 9 12.078 4.089 -5.552 1.00 20.43 O0 HETATM 179 OP2 SUR A 9 11.546 6.539 -5.047 1.00 17.78 O0 HETATM 180 O5' SUR A 9 9.927 4.856 -4.654 1.00 18.18 O0 HETATM 181 C5' SUR A 9 9.456 3.515 -4.632 1.00 18.86 C0 HETATM 182 C4' SUR A 9 7.984 3.503 -4.236 1.00 17.23 C0 HETATM 183 O4' SUR A 9 7.849 4.145 -2.952 1.00 17.34 O0 HETATM 184 C3' SUR A 9 7.106 4.370 -5.098 1.00 17.93 C0 HETATM 185 C1' SUR A 9 6.593 4.871 -2.902 1.00 15.84 C0 HETATM 186 N1 SUR A 9 6.839 6.315 -2.718 1.00 14.13 N0 HETATM 187 C2' SUR A 9 5.957 4.537 -4.195 1.00 16.94 C0 HETATM 188 C6 SUR A 9 8.064 6.912 -3.032 1.00 13.44 C0 HETATM 189 C2 SUR A 9 5.840 7.090 -2.250 1.00 13.68 C0 HETATM 190 C5 SUR A 9 8.321 8.245 -2.836 1.00 12.83 C0 HETATM 191 S2 SUR A 9 4.275 6.506 -1.893 1.00 16.48 S0 HETATM 192 N3 SUR A 9 6.079 8.427 -2.096 1.00 12.70 N0 HETATM 193 C4 SUR A 9 7.272 9.039 -2.346 1.00 12.63 C0 HETATM 194 O4 SUR A 9 7.388 10.237 -2.110 1.00 14.89 O0 HETATM 195 O2' SUR A 9 5.173 3.358 -4.000 1.00 19.73 O0 HETATM 196 O3' SUR A 9 6.781 3.677 -6.318 1.00 19.50 O0 ATOM 197 P C A 10 6.620 4.552 -7.637 1.00 22.54 P0 ATOM 198 OP1 C A 10 6.441 3.598 -8.836 1.00 27.99 O0 ATOM 199 OP2 C A 10 7.619 5.680 -7.885 1.00 23.50 O0 ATOM 200 O5' C A 10 5.222 5.342 -7.480 1.00 20.12 O0 ATOM 201 C5' C A 10 4.010 4.579 -7.256 1.00 19.74 C0 ATOM 202 C4' C A 10 2.909 5.473 -6.719 1.00 18.62 C0 ATOM 203 O4' C A 10 3.305 6.024 -5.442 1.00 18.23 O0 ATOM 204 C3' C A 10 2.549 6.711 -7.550 1.00 18.42 C0 ATOM 205 O3' C A 10 1.794 6.372 -8.706 1.00 20.83 O0 ATOM 206 C2' C A 10 1.769 7.478 -6.491 1.00 17.22 C0 ATOM 207 O2' C A 10 0.498 6.960 -6.206 1.00 19.48 O0 ATOM 208 C1' C A 10 2.678 7.272 -5.276 1.00 16.08 C0 ATOM 209 N1 C A 10 3.726 8.311 -5.194 1.00 14.05 N0 ATOM 210 C2 C A 10 3.332 9.562 -4.696 1.00 13.27 C0 ATOM 211 O2 C A 10 2.137 9.724 -4.399 1.00 14.90 O0 ATOM 212 N3 C A 10 4.258 10.544 -4.627 1.00 12.42 N0 ATOM 213 C4 C A 10 5.508 10.319 -5.023 1.00 12.85 C0 ATOM 214 N4 C A 10 6.385 11.291 -4.899 1.00 12.75 N0 ATOM 215 C5 C A 10 5.914 9.060 -5.550 1.00 12.85 C0 ATOM 216 C6 C A 10 4.987 8.104 -5.647 1.00 13.97 C0 ATOM 217 P U A 11 1.858 7.287 -10.019 1.00 21.23 P0 ATOM 218 OP1 U A 11 1.121 6.573 -11.106 1.00 25.46 O0 ATOM 219 OP2 U A 11 3.225 7.791 -10.310 1.00 22.56 O0 ATOM 220 O5' U A 11 1.057 8.603 -9.568 1.00 18.60 O0 ATOM 221 C5' U A 11 -0.301 8.496 -9.131 1.00 18.75 C0 ATOM 222 C4' U A 11 -0.801 9.831 -8.609 1.00 17.67 C0 ATOM 223 O4' U A 11 -0.137 10.207 -7.381 1.00 20.10 O0 ATOM 224 C3' U A 11 -0.537 11.052 -9.497 1.00 19.32 C0 ATOM 225 O3' U A 11 -1.463 11.070 -10.560 1.00 19.28 O0 ATOM 226 C2' U A 11 -0.830 12.172 -8.497 1.00 18.26 C0 ATOM 227 O2' U A 11 -2.172 12.295 -8.066 1.00 19.99 O0 ATOM 228 C1' U A 11 -0.029 11.625 -7.327 1.00 17.71 C0 ATOM 229 N1 U A 11 1.381 12.023 -7.352 1.00 16.39 N0 ATOM 230 C2 U A 11 1.682 13.314 -6.918 1.00 14.61 C0 ATOM 231 O2 U A 11 0.818 14.106 -6.604 1.00 20.46 O0 ATOM 232 N3 U A 11 3.002 13.618 -6.880 1.00 16.51 N0 ATOM 233 C4 U A 11 4.061 12.821 -7.215 1.00 14.20 C0 ATOM 234 O4 U A 11 5.207 13.253 -7.176 1.00 20.19 O0 ATOM 235 C5 U A 11 3.672 11.541 -7.724 1.00 16.53 C0 ATOM 236 C6 U A 11 2.385 11.193 -7.741 1.00 14.85 C0 ATOM 237 P U A 12 -1.152 11.724 -11.995 1.00 19.56 P0 ATOM 238 OP1 U A 12 -2.260 11.210 -12.832 1.00 21.03 O0 ATOM 239 OP2 U A 12 0.255 11.467 -12.391 1.00 20.64 O0 ATOM 240 O5' U A 12 -1.198 13.304 -11.788 1.00 15.55 O0 ATOM 241 C5' U A 12 -2.449 13.929 -11.408 1.00 15.02 C0 ATOM 242 C4' U A 12 -2.155 15.381 -11.196 1.00 15.02 C0 ATOM 243 O4' U A 12 -1.343 15.539 -10.009 1.00 16.86 O0 ATOM 244 C3' U A 12 -1.321 16.073 -12.272 1.00 15.24 C0 ATOM 245 O3' U A 12 -2.139 16.271 -13.407 1.00 14.51 O0 ATOM 246 C2' U A 12 -0.923 17.324 -11.509 1.00 14.71 C0 ATOM 247 O2' U A 12 -2.025 18.174 -11.282 1.00 15.05 O0 ATOM 248 C1' U A 12 -0.530 16.674 -10.188 1.00 15.55 C0 ATOM 249 N1 U A 12 0.859 16.204 -10.120 1.00 15.93 N0 ATOM 250 C2 U A 12 1.781 17.165 -9.782 1.00 15.01 C0 ATOM 251 O2 U A 12 1.501 18.351 -9.659 1.00 16.23 O0 ATOM 252 N3 U A 12 3.055 16.696 -9.642 1.00 14.44 N0 ATOM 253 C4 U A 12 3.473 15.396 -9.796 1.00 15.37 C0 ATOM 254 O4 U A 12 4.655 15.155 -9.604 1.00 16.98 O0 ATOM 255 C5 U A 12 2.455 14.455 -10.157 1.00 15.01 C0 ATOM 256 C6 U A 12 1.193 14.886 -10.311 1.00 15.02 C0 ATOM 257 P C A 13 -1.485 16.342 -14.851 1.00 14.24 P0 ATOM 258 OP1 C A 13 -2.641 16.387 -15.793 1.00 15.13 O0 ATOM 259 OP2 C A 13 -0.445 15.292 -15.120 1.00 15.84 O0 ATOM 260 O5' C A 13 -0.600 17.659 -14.937 1.00 13.92 O0 ATOM 261 C5' C A 13 -1.266 18.901 -14.951 1.00 12.52 C0 ATOM 262 C4' C A 13 -0.261 20.009 -14.793 1.00 11.89 C0 ATOM 263 O4' C A 13 0.383 19.857 -13.513 1.00 12.49 O0 ATOM 264 C3' C A 13 0.914 20.055 -15.778 1.00 11.83 C0 ATOM 265 O3' C A 13 0.513 20.604 -17.018 1.00 11.44 O0 ATOM 266 C2' C A 13 1.850 20.981 -14.999 1.00 11.58 C0 ATOM 267 O2' C A 13 1.449 22.332 -15.011 1.00 12.55 O0 ATOM 268 C1' C A 13 1.695 20.394 -13.597 1.00 12.31 C0 ATOM 269 N1 C A 13 2.689 19.324 -13.304 1.00 12.10 N0 ATOM 270 C2 C A 13 3.983 19.726 -12.926 1.00 11.66 C0 ATOM 271 O2 C A 13 4.248 20.934 -12.932 1.00 13.20 O0 ATOM 272 N3 C A 13 4.915 18.778 -12.672 1.00 12.08 N0 ATOM 273 C4 C A 13 4.586 17.481 -12.712 1.00 11.20 C0 ATOM 274 N4 C A 13 5.502 16.586 -12.395 1.00 11.39 N0 ATOM 275 C5 C A 13 3.275 17.052 -13.085 1.00 11.74 C0 ATOM 276 C6 C A 13 2.380 18.004 -13.377 1.00 11.53 C0 ATOM 277 P U A 14 1.211 20.225 -18.392 1.00 12.62 P0 ATOM 278 OP1 U A 14 0.425 20.843 -19.497 1.00 14.95 O0 ATOM 279 OP2 U A 14 1.456 18.795 -18.377 1.00 13.99 O0 ATOM 280 O5' U A 14 2.695 20.838 -18.319 1.00 11.27 O0 ATOM 281 C5' U A 14 2.824 22.256 -18.460 1.00 12.55 C0 ATOM 282 C4' U A 14 4.201 22.698 -18.056 1.00 9.95 C0 ATOM 283 O4' U A 14 4.538 22.300 -16.731 1.00 9.56 O0 ATOM 284 C3' U A 14 5.378 22.203 -18.902 1.00 8.81 C0 ATOM 285 O3' U A 14 5.462 22.961 -20.097 1.00 9.54 O0 ATOM 286 C2' U A 14 6.533 22.533 -17.962 1.00 8.45 C0 ATOM 287 O2' U A 14 6.690 23.945 -17.909 1.00 8.66 O0 ATOM 288 C1' U A 14 5.932 22.022 -16.659 1.00 8.73 C0 ATOM 289 N1 U A 14 6.151 20.588 -16.398 1.00 8.25 N0 ATOM 290 C2 U A 14 7.383 20.239 -15.861 1.00 7.89 C0 ATOM 291 O2 U A 14 8.318 21.031 -15.770 1.00 8.65 O0 ATOM 292 N3 U A 14 7.490 18.906 -15.546 1.00 7.54 N0 ATOM 293 C4 U A 14 6.525 17.944 -15.662 1.00 8.39 C0 ATOM 294 O4 U A 14 6.785 16.798 -15.335 1.00 9.87 O0 ATOM 295 C5 U A 14 5.278 18.398 -16.184 1.00 8.92 C0 ATOM 296 C6 U A 14 5.135 19.675 -16.541 1.00 8.86 C0 ATOM 297 P C A 15 6.143 22.383 -21.419 1.00 10.65 P0 ATOM 298 OP1 C A 15 5.782 23.306 -22.519 1.00 12.84 O0 ATOM 299 OP2 C A 15 5.863 20.935 -21.584 1.00 12.00 O0 ATOM 300 O5' C A 15 7.697 22.447 -21.098 1.00 9.55 O0 ATOM 301 C5' C A 15 8.374 23.711 -21.000 1.00 9.33 C0 ATOM 302 C4' C A 15 9.734 23.462 -20.382 1.00 9.46 C0 ATOM 303 O4' C A 15 9.642 22.813 -19.087 1.00 8.08 O0 ATOM 304 C3' C A 15 10.647 22.530 -21.177 1.00 9.76 C0 ATOM 305 O3' C A 15 11.286 23.224 -22.237 1.00 11.02 O0 ATOM 306 C2' C A 15 11.662 22.170 -20.119 1.00 9.15 C0 ATOM 307 O2' C A 15 12.504 23.249 -19.768 1.00 9.88 O0 ATOM 308 C1' C A 15 10.737 21.918 -18.941 1.00 7.96 C0 ATOM 309 N1 C A 15 10.202 20.537 -18.852 1.00 8.50 N0 ATOM 310 C2 C A 15 11.011 19.554 -18.268 1.00 8.33 C0 ATOM 311 O2 C A 15 12.187 19.850 -17.947 1.00 8.81 O0 ATOM 312 N3 C A 15 10.422 18.351 -18.021 1.00 7.73 N0 ATOM 313 C4 C A 15 9.171 18.092 -18.384 1.00 8.32 C0 ATOM 314 N4 C A 15 8.700 16.874 -18.114 1.00 8.94 N0 ATOM 315 C5 C A 15 8.388 19.048 -19.048 1.00 7.86 C0 ATOM 316 C6 C A 15 8.933 20.253 -19.254 1.00 8.34 C0 ATOM 317 P U A 16 11.503 22.528 -23.640 1.00 12.41 P0 ATOM 318 OP1 U A 16 12.056 23.647 -24.453 1.00 13.95 O0 ATOM 319 OP2 U A 16 10.325 21.800 -24.087 1.00 13.68 O0 ATOM 320 O5' U A 16 12.585 21.380 -23.336 1.00 9.94 O0 ATOM 321 C5' U A 16 13.919 21.819 -22.979 1.00 9.60 C0 ATOM 322 C4' U A 16 14.719 20.631 -22.533 1.00 9.22 C0 ATOM 323 O4' U A 16 14.170 20.111 -21.300 1.00 8.33 O0 ATOM 324 C3' U A 16 14.763 19.413 -23.468 1.00 8.90 C0 ATOM 325 O3' U A 16 15.646 19.602 -24.578 1.00 10.19 O0 ATOM 326 C2' U A 16 15.225 18.365 -22.488 1.00 8.99 C0 ATOM 327 O2' U A 16 16.609 18.496 -22.229 1.00 10.08 O0 ATOM 328 C1' U A 16 14.400 18.719 -21.248 1.00 8.66 C0 ATOM 329 N1 U A 16 13.082 18.042 -21.175 1.00 8.49 N0 ATOM 330 C2 U A 16 13.089 16.770 -20.638 1.00 8.68 C0 ATOM 331 O2 U A 16 14.099 16.203 -20.278 1.00 9.19 O0 ATOM 332 N3 U A 16 11.869 16.175 -20.570 1.00 7.98 N0 ATOM 333 C4 U A 16 10.680 16.667 -21.040 1.00 8.65 C0 ATOM 334 O4 U A 16 9.676 15.943 -20.939 1.00 9.87 O0 ATOM 335 C5 U A 16 10.736 17.993 -21.603 1.00 8.32 C0 ATOM 336 C6 U A 16 11.927 18.615 -21.669 1.00 8.07 C0 TER 337 U A 16 HETATM 338 MG MG A 101 10.083 15.992 3.369 1.00 25.36 MG0 HETATM 339 MG MG A 102 7.222 15.824 10.181 1.00 27.60 MG0 HETATM 340 MG MG A 103 0.000 23.668 -16.691 0.33 23.03 MG0 HETATM 341 O HOH A 201 -0.179 18.330 9.761 1.00 25.80 O0 HETATM 342 O HOH A 202 15.237 8.713 -5.782 1.00 48.38 O0 HETATM 343 O HOH A 203 -4.181 11.125 -8.913 1.00 28.27 O0 HETATM 344 O HOH A 204 16.601 9.948 6.376 1.00 50.88 O0 HETATM 345 O HOH A 205 0.378 20.581 -10.010 1.00 39.49 O0 HETATM 346 O HOH A 206 9.433 24.809 5.698 1.00 23.58 O0 HETATM 347 O HOH A 207 -0.753 20.345 -21.677 1.00 35.90 O0 HETATM 348 O HOH A 208 -3.318 14.369 -17.157 1.00 40.63 O0 HETATM 349 O HOH A 209 15.434 23.775 12.752 1.00 41.50 O0 HETATM 350 O HOH A 210 1.265 10.273 16.374 1.00 44.18 O0 HETATM 351 O HOH A 211 8.889 15.259 10.804 1.00 25.48 O0 HETATM 352 O HOH A 212 9.093 7.331 -6.541 1.00 24.31 O0 HETATM 353 O HOH A 213 11.906 26.176 -24.989 1.00 49.12 O0 HETATM 354 O HOH A 214 1.378 21.722 -21.743 1.00 49.46 O0 HETATM 355 O HOH A 215 5.373 14.650 -15.683 1.00 24.17 O0 HETATM 356 O HOH A 216 11.846 24.938 -17.911 1.00 23.29 O0 HETATM 357 O HOH A 217 11.184 16.129 5.244 1.00 25.25 O0 HETATM 358 O HOH A 218 8.608 19.389 9.694 1.00 28.40 O0 HETATM 359 O HOH A 219 8.731 14.293 3.607 1.00 27.56 O0 HETATM 360 O HOH A 220 15.949 17.399 -26.012 1.00 27.54 O0 HETATM 361 O HOH A 221 7.522 12.494 -8.211 1.00 39.63 O0 HETATM 362 O HOH A 222 4.437 15.066 14.123 1.00 26.32 O0 HETATM 363 O HOH A 223 9.114 26.819 8.533 1.00 33.26 O0 HETATM 364 O HOH A 224 3.441 17.547 -19.668 1.00 26.84 O0 HETATM 365 O HOH A 225 19.220 15.116 -2.526 1.00 31.12 O0 HETATM 366 O HOH A 226 10.699 22.624 4.553 1.00 35.14 O0 HETATM 367 O HOH A 227 -2.029 20.833 -11.700 1.00 19.97 O0 HETATM 368 O HOH A 228 -0.384 8.752 -4.395 1.00 33.27 O0 HETATM 369 O HOH A 229 18.229 14.820 8.887 1.00 28.03 O0 HETATM 370 O HOH A 230 13.074 25.315 4.775 1.00 37.68 O0 HETATM 371 O HOH A 231 6.276 13.269 -10.678 1.00 41.08 O0 HETATM 372 O HOH A 232 7.123 16.415 -21.749 1.00 19.85 O0 HETATM 373 O HOH A 233 5.869 25.989 -22.033 1.00 37.76 O0 HETATM 374 O HOH A 234 7.333 3.952 1.343 1.00 51.61 O0 HETATM 375 O HOH A 235 20.497 11.834 2.408 0.33 21.42 O0 HETATM 376 O HOH A 236 6.381 16.106 12.074 1.00 17.68 O0 HETATM 377 O HOH A 237 2.769 11.327 -11.290 1.00 38.40 O0 HETATM 378 O HOH A 238 9.848 20.316 7.058 1.00 25.60 O0 HETATM 379 O HOH A 239 -0.372 16.399 -5.663 1.00 37.16 O0 HETATM 380 O HOH A 240 10.340 25.020 -26.126 1.00 50.83 O0 HETATM 381 O HOH A 241 5.390 23.152 16.401 1.00 23.15 O0 HETATM 382 O HOH A 242 20.497 11.834 -0.301 0.33 26.55 O0 HETATM 383 O HOH A 243 8.517 2.367 -0.073 1.00 37.57 O0 HETATM 384 O HOH A 244 10.225 17.663 7.480 1.00 19.13 O0 HETATM 385 O HOH A 245 6.368 19.590 9.549 1.00 35.27 O0 HETATM 386 O HOH A 246 5.924 26.219 -19.328 1.00 16.37 O0 HETATM 387 O HOH A 247 16.458 14.712 -20.259 1.00 25.95 O0 HETATM 388 O HOH A 248 11.456 14.850 2.621 1.00 20.29 O0 HETATM 389 O HOH A 249 5.961 25.196 7.518 1.00 28.87 O0 HETATM 390 O HOH A 250 7.257 13.923 16.005 1.00 16.61 O0 HETATM 391 O HOH A 251 9.243 12.320 -2.450 1.00 24.70 O0 HETATM 392 O HOH A 252 15.710 21.869 -26.244 1.00 14.24 O0 HETATM 393 O HOH A 253 11.933 11.373 -0.817 1.00 25.78 O0 HETATM 394 O HOH A 254 3.961 17.145 11.240 1.00 33.28 O0 HETATM 395 O HOH A 255 1.543 13.759 -13.837 1.00 23.02 O0 HETATM 396 O HOH A 256 1.398 19.333 18.580 1.00 23.46 O0 HETATM 397 O HOH A 257 0.000 23.668 -19.675 0.33 21.36 O0 HETATM 398 O HOH A 258 8.618 26.458 11.580 1.00 23.86 O0 HETATM 399 O HOH A 259 17.484 6.334 -0.311 1.00 21.90 O0 HETATM 400 O HOH A 260 12.663 18.877 5.228 1.00 25.75 O0 HETATM 401 O HOH A 261 5.577 11.472 18.252 1.00 43.89 O0 HETATM 402 O HOH A 262 14.340 24.495 -26.016 1.00 28.48 O0 HETATM 403 O HOH A 263 8.361 19.907 -23.112 1.00 23.13 O0 HETATM 404 O HOH A 264 11.694 4.803 3.511 1.00 34.35 O0 HETATM 405 O HOH A 265 2.020 16.517 -16.653 1.00 22.70 O0 HETATM 406 O HOH A 266 11.365 9.176 -3.824 1.00 21.54 O0 HETATM 407 O HOH A 267 16.713 21.524 1.330 1.00 43.69 O0 HETATM 408 O HOH A 268 16.814 6.071 -4.547 1.00 29.44 O0 HETATM 409 O HOH A 269 13.013 23.011 -27.164 1.00 35.87 O0 HETATM 410 O HOH A 270 -1.608 12.626 -15.616 1.00 36.20 O0 HETATM 411 O HOH A 271 5.980 16.273 -19.117 1.00 18.18 O0 HETATM 412 O HOH A 272 4.616 13.812 -13.094 1.00 26.43 O0 HETATM 413 O HOH A 273 13.965 15.640 2.144 1.00 37.65 O0 HETATM 414 O HOH A 274 7.599 8.530 -8.904 1.00 47.34 O0 HETATM 415 O HOH A 275 5.814 22.307 6.528 1.00 38.22 O0 HETATM 416 O HOH A 276 12.689 1.716 -2.485 1.00 35.23 O0 HETATM 417 O HOH A 277 9.101 13.202 0.454 1.00 29.93 O0 HETATM 418 O HOH A 278 10.072 23.329 -14.836 1.00 32.87 O0 HETATM 419 O HOH A 279 7.751 13.546 13.149 1.00 23.00 O0 HETATM 420 O HOH A 280 8.087 17.655 10.051 1.00 24.77 O0 HETATM 421 O HOH A 281 9.339 10.645 -5.647 1.00 24.15 O0 HETATM 422 O HOH A 282 17.343 13.000 -3.343 1.00 42.12 O0 HETATM 423 O HOH A 283 0.345 5.145 -3.396 1.00 36.90 O0 HETATM 424 O HOH A 284 6.800 11.866 20.464 0.50 36.81 O0 HETATM 425 O HOH A 285 0.000 23.668 -12.238 0.33 21.00 O0 HETATM 426 O HOH A 286 8.451 15.776 8.282 1.00 29.21 O0 HETATM 427 O HOH A 287 20.497 11.834 6.874 0.33 36.64 O0 HETATM 428 O HOH A 288 8.165 12.204 17.913 1.00 39.92 O0 HETATM 429 O HOH A 289 12.769 13.790 -0.509 1.00 32.23 O0 HETATM 430 O HOH A 290 14.373 22.347 2.121 1.00 55.21 O0 HETATM 431 O HOH A 291 2.506 22.033 18.618 1.00 38.89 O0 HETATM 432 O HOH A 292 11.731 7.587 -8.981 1.00 37.01 O0 HETATM 433 O HOH A 293 14.646 1.923 -0.441 1.00 36.85 O0 HETATM 434 O HOH A 294 7.854 19.700 4.725 1.00 47.71 O0 HETATM 435 O HOH A 295 11.054 17.813 2.977 1.00 29.12 O0 HETATM 436 O HOH A 296 10.167 27.913 10.169 1.00 42.67 O0 HETATM 437 O HOH A 297 1.308 23.323 -23.668 1.00 49.81 O0 HETATM 438 O HOH A 298 4.480 3.360 0.907 1.00 53.99 O0 HETATM 439 O HOH A 299 9.213 16.138 1.615 1.00 39.72 O0 HETATM 440 O HOH A 300 8.365 17.102 4.246 1.00 34.79 O0 CONECT 163 177 CONECT 177 163 178 179 180 CONECT 178 177 CONECT 179 177 CONECT 180 177 181 CONECT 181 180 182 CONECT 182 181 183 184 CONECT 183 182 185 CONECT 184 182 187 196 CONECT 185 183 186 187 CONECT 186 185 188 189 CONECT 187 184 185 195 CONECT 188 186 190 CONECT 189 186 191 192 CONECT 190 188 193 CONECT 191 189 CONECT 192 189 193 CONECT 193 190 192 194 CONECT 194 193 CONECT 195 187 CONECT 196 184 197 CONECT 197 196 CONECT 267 340 CONECT 338 357 359 388 435 CONECT 338 439 440 CONECT 339 351 376 420 426 CONECT 340 267 397 CONECT 351 339 CONECT 357 338 CONECT 359 338 CONECT 376 339 CONECT 388 338 CONECT 397 340 CONECT 420 339 CONECT 426 339 CONECT 435 338 CONECT 439 338 CONECT 440 338 MASTER 391 0 4 0 0 0 0 6 439 1 38 2 END