HEADER    LYASE                                   19-DEC-01   1KNW               
TITLE     CRYSTAL STRUCTURE OF DIAMINOPIMELATE DECARBOXYLASE                     
COMPND    MOL_ID: 1;                                                             
COMPND   2 MOLECULE: DIAMINOPIMELATE DECARBOXYLASE;                              
COMPND   3 CHAIN: A;                                                             
COMPND   4 SYNONYM: DAP DECARBOXYLASE;                                           
COMPND   5 EC: 4.1.1.20;                                                         
COMPND   6 ENGINEERED: YES                                                       
SOURCE    MOL_ID: 1;                                                             
SOURCE   2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI;                                
SOURCE   3 ORGANISM_TAXID: 562;                                                  
SOURCE   4 GENE: LYSA;                                                           
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);                        
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 469008;                                      
SOURCE   7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);                                  
SOURCE   8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                               
SOURCE   9 EXPRESSION_SYSTEM_PLASMID: PET28B                                     
KEYWDS    PYRIDOXAL-PHOSPHATE, DECARBOXYLATION, DIAMINOPIMELATE, LYSINE, TIM-    
KEYWDS   2 BARREL, LYASE                                                         
EXPDTA    X-RAY DIFFRACTION                                                      
AUTHOR    V.LEVDIKOV,L.BLAGOVA,N.BOSE,C.MOMANY                                   
REVDAT   3   13-JUL-11 1KNW    1       VERSN                                     
REVDAT   2   24-FEB-09 1KNW    1       VERSN                                     
REVDAT   1   11-NOV-03 1KNW    0                                                 
JRNL        AUTH   V.LEVDIKOV,L.BLAGOVA,N.BOSE,C.MOMANY                          
JRNL        TITL   DIAMINOPIMELATE DECARBOXYLASE USES A VERSATILE ACTIVE SITE    
JRNL        TITL 2 FOR STEREOSPECIFIC DECARBOXYLATION                            
JRNL        REF    TO BE PUBLISHED                                               
JRNL        REFN                                                                 
REMARK   2                                                                       
REMARK   2 RESOLUTION.    2.10 ANGSTROMS.                                        
REMARK   3                                                                       
REMARK   3 REFINEMENT.                                                           
REMARK   3   PROGRAM     : REFMAC                                                
REMARK   3   AUTHORS     : MURSHUDOV,VAGIN,DODSON                                
REMARK   3                                                                       
REMARK   3  DATA USED IN REFINEMENT.                                             
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10                            
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 10.00                           
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                           
REMARK   3   COMPLETENESS FOR RANGE        (%) : 98.0                            
REMARK   3   NUMBER OF REFLECTIONS             : 29454                           
REMARK   3                                                                       
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                      
REMARK   3   CROSS-VALIDATION METHOD          : NULL                             
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                           
REMARK   3   R VALUE     (WORKING + TEST SET) : NULL                             
REMARK   3   R VALUE            (WORKING SET) : 0.173                            
REMARK   3   FREE R VALUE                     : 0.220                            
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : NULL                             
REMARK   3   FREE R VALUE TEST SET COUNT      : 1495                             
REMARK   3                                                                       
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                     
REMARK   3   PROTEIN ATOMS            : 3264                                     
REMARK   3   NUCLEIC ACID ATOMS       : 0                                        
REMARK   3   HETEROGEN ATOMS          : 34                                       
REMARK   3   SOLVENT ATOMS            : 393                                      
REMARK   3                                                                       
REMARK   3  B VALUES.                                                            
REMARK   3   FROM WILSON PLOT           (A**2) : 20.70                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 20.70                           
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                        
REMARK   3    B11 (A**2) : NULL                                                  
REMARK   3    B22 (A**2) : NULL                                                  
REMARK   3    B33 (A**2) : NULL                                                  
REMARK   3    B12 (A**2) : NULL                                                  
REMARK   3    B13 (A**2) : NULL                                                  
REMARK   3    B23 (A**2) : NULL                                                  
REMARK   3                                                                       
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.                                  
REMARK   3   ESU BASED ON R VALUE                            (A): NULL           
REMARK   3   ESU BASED ON FREE R VALUE                       (A): NULL           
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): NULL           
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL           
REMARK   3                                                                       
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES.                                    
REMARK   3   DISTANCE RESTRAINTS.                    RMS    SIGMA                
REMARK   3    BOND LENGTH                     (A) : 0.010 ; NULL                 
REMARK   3    ANGLE DISTANCE                  (A) : 0.012 ; NULL                 
REMARK   3    INTRAPLANAR 1-4 DISTANCE        (A) : NULL  ; NULL                 
REMARK   3    H-BOND OR METAL COORDINATION    (A) : NULL  ; NULL                 
REMARK   3                                                                       
REMARK   3   PLANE RESTRAINT                  (A) : NULL  ; NULL                 
REMARK   3   CHIRAL-CENTER RESTRAINT       (A**3) : NULL  ; NULL                 
REMARK   3                                                                       
REMARK   3   NON-BONDED CONTACT RESTRAINTS.                                      
REMARK   3    SINGLE TORSION                  (A) : NULL  ; NULL                 
REMARK   3    MULTIPLE TORSION                (A) : NULL  ; NULL                 
REMARK   3    H-BOND (X...Y)                  (A) : NULL  ; NULL                 
REMARK   3    H-BOND (X-H...Y)                (A) : NULL  ; NULL                 
REMARK   3                                                                       
REMARK   3   CONFORMATIONAL TORSION ANGLE RESTRAINTS.                            
REMARK   3    SPECIFIED                 (DEGREES) : NULL  ; NULL                 
REMARK   3    PLANAR                    (DEGREES) : NULL  ; NULL                 
REMARK   3    STAGGERED                 (DEGREES) : NULL  ; NULL                 
REMARK   3    TRANSVERSE                (DEGREES) : NULL  ; NULL                 
REMARK   3                                                                       
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.    RMS    SIGMA                 
REMARK   3   MAIN-CHAIN BOND              (A**2) : NULL  ; NULL                  
REMARK   3   MAIN-CHAIN ANGLE             (A**2) : NULL  ; NULL                  
REMARK   3   SIDE-CHAIN BOND              (A**2) : NULL  ; NULL                  
REMARK   3   SIDE-CHAIN ANGLE             (A**2) : NULL  ; NULL                  
REMARK   3                                                                       
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                       
REMARK   4                                                                       
REMARK   4 1KNW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                          
REMARK 100                                                                       
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-02.                   
REMARK 100 THE RCSB ID CODE IS RCSB015156.                                       
REMARK 200                                                                       
REMARK 200 EXPERIMENTAL DETAILS                                                  
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                   
REMARK 200  DATE OF DATA COLLECTION        : NULL                                
REMARK 200  TEMPERATURE           (KELVIN) : 93                                  
REMARK 200  PH                             : 6.0                                 
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                   
REMARK 200                                                                       
REMARK 200  SYNCHROTRON              (Y/N) : N                                   
REMARK 200  RADIATION SOURCE               : ROTATING ANODE                      
REMARK 200  BEAMLINE                       : NULL                                
REMARK 200  X-RAY GENERATOR MODEL          : RIGAKU RU200                        
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                   
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.5418                              
REMARK 200  MONOCHROMATOR                  : NULL                                
REMARK 200  OPTICS                         : NULL                                
REMARK 200                                                                       
REMARK 200  DETECTOR TYPE                  : IMAGE PLATE                         
REMARK 200  DETECTOR MANUFACTURER          : MARRESEARCH                         
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : DENZO                               
REMARK 200  DATA SCALING SOFTWARE          : SCALEPACK                           
REMARK 200                                                                       
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 29807                               
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.100                               
REMARK 200  RESOLUTION RANGE LOW       (A) : 20.000                              
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : -3.000                              
REMARK 200                                                                       
REMARK 200 OVERALL.                                                              
REMARK 200  COMPLETENESS FOR RANGE     (%) : 98.0                                
REMARK 200  DATA REDUNDANCY                : 10.200                              
REMARK 200  R MERGE                    (I) : 0.06800                             
REMARK 200  R SYM                      (I) : 0.06800                             
REMARK 200   FOR THE DATA SET  : 27.8000                             
REMARK 200                                                                       
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                      
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10                      
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.17                      
REMARK 200  COMPLETENESS FOR SHELL     (%) : 73.1                                
REMARK 200  DATA REDUNDANCY IN SHELL       : 4.00                                
REMARK 200  R MERGE FOR SHELL          (I) : 0.20600                             
REMARK 200  R SYM FOR SHELL            (I) : 0.20600                             
REMARK 200   FOR SHELL         : 4.100                               
REMARK 200                                                                       
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                               
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR                           
REMARK 200 SOFTWARE USED: MLPHARE                                                
REMARK 200 STARTING MODEL: NULL                                                  
REMARK 200                                                                       
REMARK 200 REMARK: NULL                                                          
REMARK 280                                                                       
REMARK 280 CRYSTAL                                                               
REMARK 280 SOLVENT CONTENT, VS   (%): 53.48                                      
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64                      
REMARK 280                                                                       
REMARK 280 CRYSTALLIZATION CONDITIONS: LITHIUM SULFATE, MES, PYRIDOXAL-5'-       
REMARK 280  PHOSPHATE, PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K   
REMARK 290                                                                       
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                             
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2                          
REMARK 290                                                                       
REMARK 290      SYMOP   SYMMETRY                                                 
REMARK 290     NNNMMM   OPERATOR                                                 
REMARK 290       1555   X,Y,Z                                                    
REMARK 290       2555   -Y,X-Y,Z+1/3                                             
REMARK 290       3555   -X+Y,-X,Z+2/3                                            
REMARK 290       4555   -X,-Y,Z+1/2                                              
REMARK 290       5555   Y,-X+Y,Z+5/6                                             
REMARK 290       6555   X-Y,X,Z+1/6                                              
REMARK 290       7555   Y,X,-Z+1/3                                               
REMARK 290       8555   X-Y,-Y,-Z                                                
REMARK 290       9555   -X,-X+Y,-Z+2/3                                           
REMARK 290      10555   -Y,-X,-Z+5/6                                             
REMARK 290      11555   -X+Y,Y,-Z+1/2                                            
REMARK 290      12555   X,X-Y,-Z+1/6                                             
REMARK 290                                                                       
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                      
REMARK 290           MMM -> TRANSLATION VECTOR                                   
REMARK 290                                                                       
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                             
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM              
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                 
REMARK 290 RELATED MOLECULES.                                                    
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000             
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000             
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000             
REMARK 290   SMTRY1   2 -0.500000 -0.866025  0.000000        0.00000             
REMARK 290   SMTRY2   2  0.866025 -0.500000  0.000000        0.00000             
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       58.98333             
REMARK 290   SMTRY1   3 -0.500000  0.866025  0.000000        0.00000             
REMARK 290   SMTRY2   3 -0.866025 -0.500000  0.000000        0.00000             
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000      117.96667             
REMARK 290   SMTRY1   4 -1.000000  0.000000  0.000000        0.00000             
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000        0.00000             
REMARK 290   SMTRY3   4  0.000000  0.000000  1.000000       88.47500             
REMARK 290   SMTRY1   5  0.500000  0.866025  0.000000        0.00000             
REMARK 290   SMTRY2   5 -0.866025  0.500000  0.000000        0.00000             
REMARK 290   SMTRY3   5  0.000000  0.000000  1.000000      147.45833             
REMARK 290   SMTRY1   6  0.500000 -0.866025  0.000000        0.00000             
REMARK 290   SMTRY2   6  0.866025  0.500000  0.000000        0.00000             
REMARK 290   SMTRY3   6  0.000000  0.000000  1.000000       29.49167             
REMARK 290   SMTRY1   7 -0.500000  0.866025  0.000000        0.00000             
REMARK 290   SMTRY2   7  0.866025  0.500000  0.000000        0.00000             
REMARK 290   SMTRY3   7  0.000000  0.000000 -1.000000       58.98333             
REMARK 290   SMTRY1   8  1.000000  0.000000  0.000000        0.00000             
REMARK 290   SMTRY2   8  0.000000 -1.000000  0.000000        0.00000             
REMARK 290   SMTRY3   8  0.000000  0.000000 -1.000000        0.00000             
REMARK 290   SMTRY1   9 -0.500000 -0.866025  0.000000        0.00000             
REMARK 290   SMTRY2   9 -0.866025  0.500000  0.000000        0.00000             
REMARK 290   SMTRY3   9  0.000000  0.000000 -1.000000      117.96667             
REMARK 290   SMTRY1  10  0.500000 -0.866025  0.000000        0.00000             
REMARK 290   SMTRY2  10 -0.866025 -0.500000  0.000000        0.00000             
REMARK 290   SMTRY3  10  0.000000  0.000000 -1.000000      147.45833             
REMARK 290   SMTRY1  11 -1.000000  0.000000  0.000000        0.00000             
REMARK 290   SMTRY2  11  0.000000  1.000000  0.000000        0.00000             
REMARK 290   SMTRY3  11  0.000000  0.000000 -1.000000       88.47500             
REMARK 290   SMTRY1  12  0.500000  0.866025  0.000000        0.00000             
REMARK 290   SMTRY2  12  0.866025 -0.500000  0.000000        0.00000             
REMARK 290   SMTRY3  12  0.000000  0.000000 -1.000000       29.49167             
REMARK 290                                                                       
REMARK 290 REMARK: NULL                                                          
REMARK 300                                                                       
REMARK 300 BIOMOLECULE: 1                                                        
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                 
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                   
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON                
REMARK 300 BURIED SURFACE AREA.                                                  
REMARK 300 REMARK: THE ACTIVE BIOLOGICAL ENTITY IS A HOMODIMER. THE SECOND       
REMARK 300 MONOMER IS GENERATED FROM THE ASYMMETRYIC UNIT BY THE OPERATION: -    
REMARK 300 Y,-X,5/6-Z                                                            
REMARK 350                                                                       
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN            
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                 
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS           
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                           
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                                
REMARK 350                                                                       
REMARK 350 BIOMOLECULE: 1                                                        
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                            
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC                     
REMARK 350 SOFTWARE USED: PISA,PQS                                               
REMARK 350 TOTAL BURIED SURFACE AREA: 10710 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 28560 ANGSTROM**2                        
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                      
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000             
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000             
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000             
REMARK 350   BIOMT1   2  0.500000 -0.866025  0.000000       49.29000             
REMARK 350   BIOMT2   2 -0.866025 -0.500000  0.000000       85.37278             
REMARK 350   BIOMT3   2  0.000000  0.000000 -1.000000      147.45833             
REMARK 465                                                                       
REMARK 465 MISSING RESIDUES                                                      
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                        
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN                
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                 
REMARK 465                                                                       
REMARK 465   M RES C SSSEQI                                                      
REMARK 465     MET A     1                                                       
REMARK 465     HIS A   423                                                       
REMARK 465     HIS A   424                                                       
REMARK 465     HIS A   425                                                       
REMARK 500                                                                       
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                          
REMARK 500 SUBTOPIC: TORSION ANGLES                                              
REMARK 500                                                                       
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:             
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;                
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                              
REMARK 500                                                                       
REMARK 500 STANDARD TABLE:                                                       
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                     
REMARK 500                                                                       
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-            
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400             
REMARK 500                                                                       
REMARK 500  M RES CSSEQI        PSI       PHI                                    
REMARK 500    CYS A  56      101.89   -175.44                                    
REMARK 500    ASN A 161       34.62    -99.42                                    
REMARK 500    ILE A 192      -52.52   -122.52                                    
REMARK 500    GLN A 234      125.07    -36.55                                    
REMARK 500    THR A 349       78.56   -100.26                                    
REMARK 500    HIS A 421       57.83   -174.21                                    
REMARK 500                                                                       
REMARK 500 REMARK: NULL                                                          
REMARK 500                                                                       
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                          
REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY                                        
REMARK 500                                                                       
REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY                        
REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER                  
REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME;                      
REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;                             
REMARK 500 I=INSERTION CODE).                                                    
REMARK 500                                                                       
REMARK 500  M RES CSSEQI        ANGLE                                            
REMARK 500    LEU A 392        -10.53                                            
REMARK 500    HIS A 421         11.12                                            
REMARK 500                                                                       
REMARK 500 REMARK: NULL                                                          
REMARK 500                                                                       
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                          
REMARK 500 SUBTOPIC: CHIRAL CENTERS                                              
REMARK 500                                                                       
REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL                      
REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY                       
REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR                         
REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE                                     
REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN                             
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE                    
REMARK 500                                                                       
REMARK 500 STANDARD TABLE:                                                       
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16)        
REMARK 500                                                                       
REMARK 500  M RES CSSEQI    IMPROPER   EXPECTED   FOUND DETAILS                  
REMARK 500    ARG A 307        23.9      L          L   OUTSIDE RANGE            
REMARK 500                                                                       
REMARK 500 REMARK: NULL                                                          
REMARK 525                                                                       
REMARK 525 SOLVENT                                                               
REMARK 525                                                                       
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT                     
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST                   
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT                  
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE                        
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;                              
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE                   
REMARK 525 NUMBER; I=INSERTION CODE):                                            
REMARK 525                                                                       
REMARK 525  M RES CSSEQI                                                         
REMARK 525    HOH A 776        DISTANCE =  5.03 ANGSTROMS                        
REMARK 525    HOH A 801        DISTANCE =  6.16 ANGSTROMS                        
REMARK 525    HOH A 825        DISTANCE =  5.22 ANGSTROMS                        
REMARK 525    HOH A 881        DISTANCE =  5.03 ANGSTROMS                        
REMARK 620                                                                       
REMARK 620 METAL COORDINATION                                                    
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;                
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                              
REMARK 620                                                                       
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                          
REMARK 620                              LI A 530  LI                             
REMARK 620 N RES CSSEQI ATOM                                                     
REMARK 620 1 HOH A 645   O                                                       
REMARK 620 2 LYS A 154   O   117.4                                               
REMARK 620 3 HIS A 151   O   154.1  88.5                                         
REMARK 620 4 SER A 152   O    89.4 105.2  82.5                                   
REMARK 620 5 ASN A 156   OD1  87.6 107.7  84.9 144.3                             
REMARK 620 N                    1     2     3     4                              
REMARK 620                                                                       
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                          
REMARK 620                              LI A 540  LI                             
REMARK 620 N RES CSSEQI ATOM                                                     
REMARK 620 1 SER A 384   O                                                       
REMARK 620 2 HOH A 590   O   115.0                                               
REMARK 620 3 ASN A 303   ND2  69.2  86.3                                         
REMARK 620 4 PRO A 390   O   161.9  80.3 104.0                                   
REMARK 620 5 ARG A 389   O    89.6 150.3  87.5  73.1                             
REMARK 620 N                    1     2     3     4                              
REMARK 800                                                                       
REMARK 800 SITE                                                                  
REMARK 800 SITE_IDENTIFIER: AC1                                                  
REMARK 800 EVIDENCE_CODE: SOFTWARE                                               
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 520                  
REMARK 800                                                                       
REMARK 800 SITE_IDENTIFIER: AC2                                                  
REMARK 800 EVIDENCE_CODE: SOFTWARE                                               
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LI A 530                   
REMARK 800                                                                       
REMARK 800 SITE_IDENTIFIER: AC3                                                  
REMARK 800 EVIDENCE_CODE: SOFTWARE                                               
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LI A 540                   
REMARK 800                                                                       
REMARK 800 SITE_IDENTIFIER: AC4                                                  
REMARK 800 EVIDENCE_CODE: SOFTWARE                                               
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP A 554                  
REMARK 800                                                                       
REMARK 800 SITE_IDENTIFIER: AC5                                                  
REMARK 800 EVIDENCE_CODE: SOFTWARE                                               
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 510                  
REMARK 900                                                                       
REMARK 900 RELATED ENTRIES                                                       
REMARK 900 RELATED ID: 1KO0   RELATED DB: PDB                                    
REMARK 900 CRYSTAL STRUCTURE OF A D,L-LYSINE COMPLEX OF                          
REMARK 900 DIAMINOPIMELATE DECARBOXYLASE                                         
DBREF  1KNW A    1   420  UNP    P00861   DCDA_ECOLI       1    420              
SEQADV 1KNW HIS A  421  UNP  P00861              EXPRESSION TAG                  
SEQADV 1KNW HIS A  422  UNP  P00861              EXPRESSION TAG                  
SEQADV 1KNW HIS A  423  UNP  P00861              EXPRESSION TAG                  
SEQADV 1KNW HIS A  424  UNP  P00861              EXPRESSION TAG                  
SEQADV 1KNW HIS A  425  UNP  P00861              EXPRESSION TAG                  
SEQRES   1 A  425  MET PRO HIS SER LEU PHE SER THR ASP THR ASP LEU THR           
SEQRES   2 A  425  ALA GLU ASN LEU LEU ARG LEU PRO ALA GLU PHE GLY CYS           
SEQRES   3 A  425  PRO VAL TRP VAL TYR ASP ALA GLN ILE ILE ARG ARG GLN           
SEQRES   4 A  425  ILE ALA ALA LEU LYS GLN PHE ASP VAL VAL ARG PHE ALA           
SEQRES   5 A  425  GLN LYS ALA CYS SER ASN ILE HIS ILE LEU ARG LEU MET           
SEQRES   6 A  425  ARG GLU GLN GLY VAL LYS VAL ASP SER VAL SER LEU GLY           
SEQRES   7 A  425  GLU ILE GLU ARG ALA LEU ALA ALA GLY TYR ASN PRO GLN           
SEQRES   8 A  425  THR HIS PRO ASP ASP ILE VAL PHE THR ALA ASP VAL ILE           
SEQRES   9 A  425  ASP GLN ALA THR LEU GLU ARG VAL SER GLU LEU GLN ILE           
SEQRES  10 A  425  PRO VAL ASN ALA GLY SER VAL ASP MET LEU ASP GLN LEU           
SEQRES  11 A  425  GLY GLN VAL SER PRO GLY HIS ARG VAL TRP LEU ARG VAL           
SEQRES  12 A  425  ASN PRO GLY PHE GLY HIS GLY HIS SER GLN LYS THR ASN           
SEQRES  13 A  425  THR GLY GLY GLU ASN SER LYS HIS GLY ILE TRP TYR THR           
SEQRES  14 A  425  ASP LEU PRO ALA ALA LEU ASP VAL ILE GLN ARG HIS HIS           
SEQRES  15 A  425  LEU GLN LEU VAL GLY ILE HIS MET HIS ILE GLY SER GLY           
SEQRES  16 A  425  VAL ASP TYR ALA HIS LEU GLU GLN VAL CYS GLY ALA MET           
SEQRES  17 A  425  VAL ARG GLN VAL ILE GLU PHE GLY GLN ASP LEU GLN ALA           
SEQRES  18 A  425  ILE SER ALA GLY GLY GLY LEU SER VAL PRO TYR GLN GLN           
SEQRES  19 A  425  GLY GLU GLU ALA VAL ASP THR GLU HIS TYR TYR GLY LEU           
SEQRES  20 A  425  TRP ASN ALA ALA ARG GLU GLN ILE ALA ARG HIS LEU GLY           
SEQRES  21 A  425  HIS PRO VAL LYS LEU GLU ILE GLU PRO GLY ARG PHE LEU           
SEQRES  22 A  425  VAL ALA GLN SER GLY VAL LEU ILE THR GLN VAL ARG SER           
SEQRES  23 A  425  VAL LYS GLN MET GLY SER ARG HIS PHE VAL LEU VAL ASP           
SEQRES  24 A  425  ALA GLY PHE ASN ASP LEU MET ARG PRO ALA MET TYR GLY           
SEQRES  25 A  425  SER TYR HIS HIS ILE SER ALA LEU ALA ALA ASP GLY ARG           
SEQRES  26 A  425  SER LEU GLU HIS ALA PRO THR VAL GLU THR VAL VAL ALA           
SEQRES  27 A  425  GLY PRO LEU CYS GLU SER GLY ASP VAL PHE THR GLN GLN           
SEQRES  28 A  425  GLU GLY GLY ASN VAL GLU THR ARG ALA LEU PRO GLU VAL           
SEQRES  29 A  425  LYS ALA GLY ASP TYR LEU VAL LEU HIS ASP THR GLY ALA           
SEQRES  30 A  425  TYR GLY ALA SER MET SER SER ASN TYR ASN SER ARG PRO           
SEQRES  31 A  425  LEU LEU PRO GLU VAL LEU PHE ASP ASN GLY GLN ALA ARG           
SEQRES  32 A  425  LEU ILE ARG ARG ARG GLN THR ILE GLU GLU LEU LEU ALA           
SEQRES  33 A  425  LEU GLU LEU LEU HIS HIS HIS HIS HIS                           
HET    SO4  A 520       5                                                        
HET     LI  A 530       1                                                        
HET     LI  A 540       1                                                        
HET    PLP  A 554      15                                                        
HET    MES  A 510      12                                                        
HETNAM     SO4 SULFATE ION                                                       
HETNAM      LI LITHIUM ION                                                       
HETNAM     PLP PYRIDOXAL-5'-PHOSPHATE                                            
HETNAM     MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID                              
HETSYN     PLP VITAMIN B6 PHOSPHATE                                              
FORMUL   2  SO4    O4 S 2-                                                       
FORMUL   3   LI    2(LI 1+)                                                      
FORMUL   5  PLP    C8 H10 N O6 P                                                 
FORMUL   6  MES    C6 H13 N O4 S                                                 
FORMUL   7  HOH   *393(H2 O)                                                     
HELIX    1   1 THR A   13  GLY A   25  1                                  13     
HELIX    2   2 ALA A   33  ALA A   42  1                                  10     
HELIX    3   3 LYS A   54  CYS A   56  5                                   3     
HELIX    4   4 ASN A   58  GLN A   68  1                                  11     
HELIX    5   5 SER A   76  ALA A   86  1                                  11     
HELIX    6   6 ASP A  105  GLN A  116  1                                  12     
HELIX    7   7 SER A  123  SER A  134  1                                  12     
HELIX    8   8 ASP A  170  HIS A  181  1                                  12     
HELIX    9   9 ASP A  197  GLY A  216  1                                  20     
HELIX   10  10 ASP A  240  GLY A  260  1                                  21     
HELIX   11  11 GLY A  270  ALA A  275  1                                   6     
HELIX   12  12 MET A  306  GLY A  312  1                                   7     
HELIX   13  13 GLY A  379  SER A  383  5                                   5     
HELIX   14  14 THR A  410  ALA A  416  1                                   7     
SHEET    1   A11 GLN A 401  ARG A 406  0                                         
SHEET    2   A11 GLU A 394  ASP A 398 -1  O  GLU A 394   N  ILE A 405            
SHEET    3   A11 VAL A  28  ASP A  32  1  O  TRP A  29   N  VAL A 395            
SHEET    4   A11 GLY A 278  MET A 290 -1  N  VAL A 279   O  VAL A  30            
SHEET    5   A11 TYR A 369  LEU A 372 -1  N  LEU A 370   O  THR A 282            
SHEET    6   A11 ILE A 317  LEU A 320 -1  O  SER A 318   N  VAL A 371            
SHEET    7   A11 TYR A 369  LEU A 372 -1  O  TYR A 369   N  LEU A 320            
SHEET    8   A11 GLY A 278  MET A 290 -1  O  LEU A 280   N  LEU A 372            
SHEET    9   A11 ARG A 293  VAL A 298 -1  O  ARG A 293   N  MET A 290            
SHEET   10   A11 THR A 332  ALA A 338  1  N  VAL A 336   O  HIS A 294            
SHEET   11   A11 ARG A 359  PRO A 362 -1  O  ARG A 359   N  THR A 335            
SHEET    1   B11 VAL A  48  ALA A  52  0                                         
SHEET    2   B11 LYS A  71  SER A  74  1  O  LYS A  71   N  PHE A  51            
SHEET    3   B11 ILE A  97  ALA A 101  1  O  VAL A  98   N  SER A  74            
SHEET    4   B11 VAL A 119  ALA A 121  1  N  ASN A 120   O  PHE A  99            
SHEET    5   B11 ARG A 138  ASN A 144  1  O  ARG A 138   N  VAL A 119            
SHEET    6   B11 ILE A 166  TRP A 167  1  N  ILE A 166   O  ARG A 142            
SHEET    7   B11 ARG A 138  ASN A 144  1  O  ARG A 142   N  ILE A 166            
SHEET    8   B11 GLN A 184  HIS A 189  1  O  GLN A 184   N  VAL A 139            
SHEET    9   B11 ALA A 221  SER A 223  1  N  ALA A 221   O  VAL A 186            
SHEET   10   B11 LYS A 264  ILE A 267  1  O  LYS A 264   N  ILE A 222            
SHEET   11   B11 VAL A  48  ALA A  52  1  O  VAL A  48   N  ILE A 267            
LINK         NZ  LYS A  54                 C4A PLP A 554     1555   1555  1.31   
LINK        LI    LI A 530                 O   HOH A 645     1555   1555  2.74   
LINK        LI    LI A 530                 O   LYS A 154     1555   1555  2.75   
LINK        LI    LI A 530                 O   HIS A 151     1555   1555  2.93   
LINK        LI    LI A 530                 O   SER A 152     1555   1555  2.91   
LINK        LI    LI A 530                 OD1 ASN A 156     1555   1555  2.76   
LINK        LI    LI A 540                 O   SER A 384     1555   1555  2.66   
LINK        LI    LI A 540                 O   HOH A 590     1555   1555  2.72   
LINK        LI    LI A 540                 ND2 ASN A 303     1555   1555  3.13   
LINK        LI    LI A 540                 O   PRO A 390     1555   1555  3.06   
LINK        LI    LI A 540                 O   ARG A 389     1555   1555  2.96   
CISPEP   1 CYS A   26    PRO A   27          0         2.48                      
SITE     1 AC1  3 MES A 510  HOH A 704  HOH A 784                                
SITE     1 AC2  5 HIS A 151  SER A 152  LYS A 154  ASN A 156                     
SITE     2 AC2  5 HOH A 645                                                      
SITE     1 AC3  6 ASN A 303  SER A 384  ARG A 389  PRO A 390                     
SITE     2 AC3  6 LEU A 391  HOH A 590                                           
SITE     1 AC4 16 ALA A  52  LYS A  54  THR A 100  HIS A 191                     
SITE     2 AC4 16 GLY A 227  GLU A 268  GLY A 270  ARG A 271                     
SITE     3 AC4 16 CYS A 342  TYR A 378  MES A 510  HOH A 595                     
SITE     4 AC4 16 HOH A 602  HOH A 614  HOH A 629  HOH A 631                     
SITE     1 AC5 13 LYS A  54  THR A 157  HIS A 191  TYR A 311                     
SITE     2 AC5 13 GLU A 343  SER A 344  TYR A 378  SO4 A 520                     
SITE     3 AC5 13 PLP A 554  HOH A 609  HOH A 614  HOH A 704                     
SITE     4 AC5 13 HOH A 864                                                      
CRYST1   98.580   98.580  176.950  90.00  90.00 120.00 P 61 2 2     12           
ORIGX1      1.000000  0.000000  0.000000        0.00000                          
ORIGX2      0.000000  1.000000  0.000000        0.00000                          
ORIGX3      0.000000  0.000000  1.000000        0.00000                          
SCALE1      0.010140  0.005860  0.000000        0.00000                          
SCALE2      0.000000  0.011710  0.000000        0.00000                          
SCALE3      0.000000  0.000000  0.005650        0.00000                          
END