HEADER    DE NOVO PROTEIN                         30-MAR-06   2GJF               
TITLE     NMR STRUCTURE OF THE COMPUTATIONALLY DESIGNED PROCARBOXYPEPTIDASE-A    
TITLE    2 (1AYE) DOMAIN                                                         
COMPND    MOL_ID: 1;                                                             
COMPND   2 MOLECULE: DESIGNED PROTEIN;                                           
COMPND   3 CHAIN: A, B;                                                          
COMPND   4 ENGINEERED: YES                                                       
SOURCE    MOL_ID: 1;                                                             
SOURCE   2 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                  
SOURCE   3 EXPRESSION_SYSTEM_TAXID: 562;                                         
SOURCE   4 EXPRESSION_SYSTEM_STRAIN: ROSETTA BL21(DE3);                          
SOURCE   5 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                               
SOURCE   6 EXPRESSION_SYSTEM_PLASMID: PET 29(B)                                  
KEYWDS    DESIGNED PROTEIN, PROCARBOXYPEPTIDASE, DE NOVO PROTEIN                 
EXPDTA    SOLUTION NMR                                                           
NUMMDL    20                                                                     
AUTHOR    S.REICHOW                                                              
REVDAT   4   09-MAR-22 2GJF    1       REMARK                                    
REVDAT   3   24-FEB-09 2GJF    1       VERSN                                     
REVDAT   2   20-FEB-07 2GJF    1       JRNL                                      
REVDAT   1   16-JAN-07 2GJF    0                                                 
JRNL        AUTH   G.DANTAS,C.CORRENT,S.L.REICHOW,J.J.HAVRANEK,Z.M.ELETR,        
JRNL        AUTH 2 N.G.ISERN,B.KUHLMAN,G.VARANI,E.A.MERRITT,D.BAKER              
JRNL        TITL   HIGH-RESOLUTION STRUCTURAL AND THERMODYNAMIC ANALYSIS OF      
JRNL        TITL 2 EXTREME STABILIZATION OF HUMAN PROCARBOXYPEPTIDASE BY         
JRNL        TITL 3 COMPUTATIONAL PROTEIN DESIGN.                                 
JRNL        REF    J.MOL.BIOL.                   V. 366  1209 2007               
JRNL        REFN                   ISSN 0022-2836                                
JRNL        PMID   17196978                                                      
JRNL        DOI    10.1016/J.JMB.2006.11.080                                     
REMARK   2                                                                       
REMARK   2 RESOLUTION. NOT APPLICABLE.                                           
REMARK   3                                                                       
REMARK   3 REFINEMENT.                                                           
REMARK   3   PROGRAM     : CYANA 2.1                                             
REMARK   3   AUTHORS     : P.GUNTERT ET AL.                                      
REMARK   3                                                                       
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                       
REMARK   4                                                                       
REMARK   4 2GJF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                          
REMARK 100                                                                       
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-APR-06.                   
REMARK 100 THE DEPOSITION ID IS D_1000037192.                                    
REMARK 210                                                                       
REMARK 210 EXPERIMENTAL DETAILS                                                  
REMARK 210  EXPERIMENT TYPE                : NMR                                 
REMARK 210  TEMPERATURE           (KELVIN) : 298                                 
REMARK 210  PH                             : 7.0                                 
REMARK 210  IONIC STRENGTH                 : 150MM                               
REMARK 210  PRESSURE                       : AMBIENT                             
REMARK 210  SAMPLE CONTENTS                : 1MM AYE, 50MM PHOSPHATE BUFFER,     
REMARK 210                                   PH 7.0, 100MM KCL, 90% H2O, 10%     
REMARK 210                                   D2O; 1MM AYE, 50MM PHOSPHATE        
REMARK 210                                   BUFFER, PH 7.0, 100MM KCL, 100%     
REMARK 210                                   D2O; 1MM AYE U-15N, 13C, 50MM       
REMARK 210                                   PHOSPHATE BUFFER, PH 7.0, 100MM     
REMARK 210                                   KCL, 90% H2O, 10% D2O; 1MM AYE U-   
REMARK 210                                   15N, 50MM PHOSPHATE BUFFER, PH      
REMARK 210                                   7.0, 100MM KCL, 90% H2O, 10% D2O;   
REMARK 210                                   1.4MM AYE U-15N, 13C, 1.4MM 14N,    
REMARK 210                                   12C AYE, 50MM PHOSPHATE BUFFER,     
REMARK 210                                   PH 7.0, 100MM KCL,100% D2O          
REMARK 210                                                                       
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 2D NOESY; 3D_13C                    
REMARK 210                                   -SEPARATED_NOESY; 3D_15N-           
REMARK 210                                   SEPARATED_NOESY; 3D_13C-FILTERED_   
REMARK 210                                   NOESY                               
REMARK 210  SPECTROMETER FIELD STRENGTH    : 750 MHZ; 500 MHZ; 600 MHZ           
REMARK 210  SPECTROMETER MODEL             : DMX; DRX; INOVA                     
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER; VARIAN                      
REMARK 210                                                                       
REMARK 210  STRUCTURE DETERMINATION.                                             
REMARK 210   SOFTWARE USED                 : CYANA 2.1, TALOS, NMRPIPE 2.3,      
REMARK 210                                   SPARKY 3.112                        
REMARK 210   METHOD USED                   : TORSION ANGLE DYNAMICS              
REMARK 210                                                                       
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                 
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                  
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LEAST           
REMARK 210                                   RESTRAINT VIOLATIONS                
REMARK 210                                                                       
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                    
REMARK 210                                                                       
REMARK 210 REMARK: HYDROGEN BOND RESTRAINTS WERE DERIVED FROM D2O PROTECTION     
REMARK 210  ANALYSIS. TORSION ANGLE RESTRAINTS WERE DERIVED FROM TALOS           
REMARK 210  PREDICTIONS                                                          
REMARK 215                                                                       
REMARK 215 NMR STUDY                                                             
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION            
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                 
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON               
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                        
REMARK 300                                                                       
REMARK 300 BIOMOLECULE: 1                                                        
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                 
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                   
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON                
REMARK 300 BURIED SURFACE AREA.                                                  
REMARK 350                                                                       
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN            
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                 
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS           
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                           
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                                
REMARK 350                                                                       
REMARK 350 BIOMOLECULE: 1                                                        
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                            
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B                                   
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000             
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000             
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000             
REMARK 465                                                                       
REMARK 465 MISSING RESIDUES                                                      
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                        
REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER;                    
REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                             
REMARK 465   MODELS 1-20                                                         
REMARK 465     RES C SSSEQI                                                      
REMARK 465     HIS A    -5                                                       
REMARK 465     HIS A    -4                                                       
REMARK 465     HIS A    -3                                                       
REMARK 465     HIS A    -2                                                       
REMARK 465     HIS A    -1                                                       
REMARK 465     HIS A     0                                                       
REMARK 465     HIS B    -5                                                       
REMARK 465     HIS B    -4                                                       
REMARK 465     HIS B    -3                                                       
REMARK 465     HIS B    -2                                                       
REMARK 465     HIS B    -1                                                       
REMARK 465     HIS B     0                                                       
REMARK 500                                                                       
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                          
REMARK 500 SUBTOPIC: TORSION ANGLES                                              
REMARK 500                                                                       
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:             
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;                
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                              
REMARK 500                                                                       
REMARK 500 STANDARD TABLE:                                                       
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                     
REMARK 500                                                                       
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-            
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400             
REMARK 500                                                                       
REMARK 500  M RES CSSEQI        PSI       PHI                                    
REMARK 500  1 GLN A  25       99.02    -58.01                                    
REMARK 500  1 PRO A  36       78.56    -69.72                                    
REMARK 500  1 GLU A  71      104.52    -52.65                                    
REMARK 500  1 PRO B  36       76.82    -69.78                                    
REMARK 500  1 PRO B  65       97.02    -69.82                                    
REMARK 500  1 GLU B  71      108.41    -56.27                                    
REMARK 500  2 GLN A  25      100.49    -57.55                                    
REMARK 500  2 PRO A  36       78.40    -69.72                                    
REMARK 500  2 GLN B  25       95.24    -61.96                                    
REMARK 500  2 PRO B  36       75.24    -69.75                                    
REMARK 500  3 SER A   2       95.26    -69.69                                    
REMARK 500  3 GLN A  25      100.47    -55.69                                    
REMARK 500  3 PRO A  36       78.48    -69.75                                    
REMARK 500  3 GLN B  25       95.13    -61.99                                    
REMARK 500  3 PRO B  36       77.86    -69.76                                    
REMARK 500  4 GLN A  25      101.74    -55.66                                    
REMARK 500  4 PRO A  36       76.36    -69.75                                    
REMARK 500  4 GLU A  71      104.06    -51.63                                    
REMARK 500  4 ASN B  12      176.25    179.72                                    
REMARK 500  4 PRO B  36       76.22    -69.76                                    
REMARK 500  4 GLU B  71      103.98    -50.90                                    
REMARK 500  5 SER A   2       90.94    -65.78                                    
REMARK 500  5 GLN A  25       98.12    -59.85                                    
REMARK 500  5 PRO A  36       78.13    -69.80                                    
REMARK 500  5 THR A  37      -41.19   -138.07                                    
REMARK 500  5 GLN B  25       96.96    -60.71                                    
REMARK 500  5 PRO B  36       75.41    -69.78                                    
REMARK 500  6 PRO A  36       78.23    -69.79                                    
REMARK 500  6 GLU A  71      105.79    -51.25                                    
REMARK 500  6 GLN B  25       96.34    -60.50                                    
REMARK 500  6 PRO B  36       72.21    -69.80                                    
REMARK 500  6 GLU B  71      107.83    -52.55                                    
REMARK 500  7 GLN A  25      104.28    -58.62                                    
REMARK 500  7 PRO A  36       71.92    -69.79                                    
REMARK 500  7 PRO A  65       99.10    -69.74                                    
REMARK 500  7 SER B   2       38.59    -94.77                                    
REMARK 500  7 GLN B  25       95.55    -61.59                                    
REMARK 500  7 PRO B  36       79.25    -69.72                                    
REMARK 500  7 PRO B  65       97.20    -69.76                                    
REMARK 500  8 SER A   2       87.46    -68.60                                    
REMARK 500  8 GLN A  25      102.66    -54.56                                    
REMARK 500  8 PRO A  36       77.11    -69.71                                    
REMARK 500  8 PRO A  42       93.96    -69.70                                    
REMARK 500  8 GLN B  25       93.36    -63.54                                    
REMARK 500  8 PRO B  36       78.46    -69.78                                    
REMARK 500  8 PRO B  42       99.08    -69.81                                    
REMARK 500  9 GLN A  25       99.80    -58.44                                    
REMARK 500  9 PRO A  36       76.58    -69.85                                    
REMARK 500  9 GLU A  71      106.63    -51.85                                    
REMARK 500  9 GLN B  25       93.83    -63.30                                    
REMARK 500                                                                       
REMARK 500 THIS ENTRY HAS     119 RAMACHANDRAN OUTLIERS.                         
REMARK 500                                                                       
REMARK 500 REMARK: NULL                                                          
REMARK 900                                                                       
REMARK 900 RELATED ENTRIES                                                       
REMARK 900 RELATED ID: 1VJQ   RELATED DB: PDB                                    
REMARK 900 CRYSTAL STRUCTURE OF DESIGNED PROTEIN BASED ON BACKBONE               
REMARK 900 CONFORMATION OF PROCARBOXYPEPTIDASE-A (1AYE) WITH SIDECHAINS CHOSEN   
REMARK 900 FOR MAXIMAL PREDICTED STABILITY                                       
REMARK 999                                                                       
REMARK 999 SEQUENCE                                                              
REMARK 999 THE PROTEIN HAS BEEN COMPUTATIONALLY DESIGNED BASED ON                
REMARK 999 HUMAN PROCARBOXYPEPTIDASE-A (1AYE) WITH SIDECHAINS CHOSEN             
REMARK 999 FOR MAXIMAL PREDICTED STABILITY. A SIX RESIDUE HIS TAG IS             
REMARK 999 PRESENT AT THE N-TERMINUS.                                            
DBREF  2GJF A   -5    72  PDB    2GJF     2GJF            -5     72              
DBREF  2GJF B   -5    72  PDB    2GJF     2GJF            -5     72              
SEQRES   1 A   78  HIS HIS HIS HIS HIS HIS GLY SER LYS THR ILE PHE VAL           
SEQRES   2 A   78  ILE VAL PRO THR ASN GLU GLU GLN VAL ALA PHE LEU GLU           
SEQRES   3 A   78  ALA LEU ALA LYS GLN ASP GLU LEU ASN PHE ASP TRP GLN           
SEQRES   4 A   78  ASN PRO PRO THR GLU PRO GLY GLN PRO VAL VAL ILE LEU           
SEQRES   5 A   78  ILE PRO SER ASP MET VAL GLU TRP PHE LEU GLU MET LEU           
SEQRES   6 A   78  LYS ALA LYS GLY ILE PRO PHE THR VAL TYR VAL GLU GLU           
SEQRES   1 B   78  HIS HIS HIS HIS HIS HIS GLY SER LYS THR ILE PHE VAL           
SEQRES   2 B   78  ILE VAL PRO THR ASN GLU GLU GLN VAL ALA PHE LEU GLU           
SEQRES   3 B   78  ALA LEU ALA LYS GLN ASP GLU LEU ASN PHE ASP TRP GLN           
SEQRES   4 B   78  ASN PRO PRO THR GLU PRO GLY GLN PRO VAL VAL ILE LEU           
SEQRES   5 B   78  ILE PRO SER ASP MET VAL GLU TRP PHE LEU GLU MET LEU           
SEQRES   6 B   78  LYS ALA LYS GLY ILE PRO PHE THR VAL TYR VAL GLU GLU           
HELIX    1   1 ASN A   12  LYS A   24  1                                  13     
HELIX    2   2 MET A   51  GLY A   63  1                                  13     
HELIX    3   3 ASN B   12  ALA B   23  1                                  12     
HELIX    4   4 MET B   51  GLY B   63  1                                  13     
SHEET    1   A 8 ASP A  31  TRP A  32  0                                         
SHEET    2   A 8 VAL A  43  ILE A  47 -1  O  LEU A  46   N  ASP A  31            
SHEET    3   A 8 THR A   4  ILE A   8 -1  N  PHE A   6   O  ILE A  45            
SHEET    4   A 8 PHE A  66  GLU A  71 -1  O  TYR A  69   N  ILE A   5            
SHEET    5   A 8 PHE B  66  GLU B  71 -1  O  VAL B  70   N  VAL A  70            
SHEET    6   A 8 THR B   4  ILE B   8 -1  N  ILE B   5   O  TYR B  69            
SHEET    7   A 8 VAL B  43  ILE B  47 -1  O  VAL B  43   N  ILE B   8            
SHEET    8   A 8 ASP B  31  TRP B  32 -1  N  ASP B  31   O  LEU B  46            
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1           
ORIGX1      1.000000  0.000000  0.000000        0.00000                          
ORIGX2      0.000000  1.000000  0.000000        0.00000                          
ORIGX3      0.000000  0.000000  1.000000        0.00000                          
SCALE1      1.000000  0.000000  0.000000        0.00000                          
SCALE2      0.000000  1.000000  0.000000        0.00000                          
SCALE3      0.000000  0.000000  1.000000        0.00000                          
MODEL        1                                                                   
MODEL        2                                                                   
MODEL        3                                                                   
MODEL        4                                                                   
MODEL        5                                                                   
MODEL        6                                                                   
MODEL        7                                                                   
MODEL        8                                                                   
MODEL        9                                                                   
MODEL       10                                                                   
MODEL       11                                                                   
MODEL       12                                                                   
MODEL       13                                                                   
MODEL       14                                                                   
MODEL       15                                                                   
MODEL       16                                                                   
MODEL       17                                                                   
MODEL       18                                                                   
MODEL       19                                                                   
MODEL       20                                                                   
END