HEADER    SIGNALING PROTEIN,TRANSFERASE           28-JUL-06   2HVD               
TITLE     HUMAN NUCLEOSIDE DIPHOSPHATE KINASE A COMPLEXED WITH ADP               
COMPND    MOL_ID: 1;                                                             
COMPND   2 MOLECULE: NUCLEOSIDE DIPHOSPHATE KINASE A;                            
COMPND   3 CHAIN: A, B, C;                                                       
COMPND   4 SYNONYM: NDK A; NDP KINASE A; TUMOR METASTATIC PROCESS-ASSOCIATED     
COMPND   5 PROTEIN; METASTASIS INHIBITION FACTOR NM23; NM23-H1; GRANZYME A-      
COMPND   6 ACTIVATED DNASE; GAAD;                                                
COMPND   7 EC: 2.7.4.6;                                                          
COMPND   8 ENGINEERED: YES                                                       
SOURCE    MOL_ID: 1;                                                             
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                    
SOURCE   3 ORGANISM_COMMON: HUMAN;                                               
SOURCE   4 ORGANISM_TAXID: 9606;                                                 
SOURCE   5 GENE: NME1, NDPKA, NM23;                                              
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                  
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                         
SOURCE   8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                               
SOURCE   9 EXPRESSION_SYSTEM_PLASMID: PET-21                                     
KEYWDS    COMPLEX ADP, SIGNALING PROTEIN, TRANSFERASE                            
EXPDTA    X-RAY DIFFRACTION                                                      
AUTHOR    M.-F.GIRAUD,F.GEORGESCAULD,I.LASCU,A.DAUTANT                           
REVDAT   6   30-AUG-23 2HVD    1       REMARK                                    
REVDAT   5   18-OCT-17 2HVD    1       REMARK                                    
REVDAT   4   13-JUL-11 2HVD    1       VERSN                                     
REVDAT   3   24-FEB-09 2HVD    1       VERSN                                     
REVDAT   2   13-FEB-07 2HVD    1       JRNL                                      
REVDAT   1   19-SEP-06 2HVD    0                                                 
JRNL        AUTH   M.-F.GIRAUD,F.GEORGESCAULD,I.LASCU,A.DAUTANT                  
JRNL        TITL   CRYSTAL STRUCTURES OF S120G MUTANT AND WILD TYPE OF HUMAN     
JRNL        TITL 2 NUCLEOSIDE DIPHOSPHATE KINASE A IN COMPLEX WITH ADP           
JRNL        REF    J.BIOENERG.BIOMEMBR.          V.  38   261 2006               
JRNL        REFN                   ISSN 0145-479X                                
JRNL        PMID   16944299                                                      
JRNL        DOI    10.1007/S10863-006-9043-0                                     
REMARK   1                                                                       
REMARK   1 REFERENCE 1                                                           
REMARK   1  AUTH   K.MIN,H.K.SONG,C.CHANG,S.Y.KIM,K.J.LEE,S.W.SUH                
REMARK   1  TITL   CRYSTAL STRUCTURE OF HUMAN NUCLEOSIDE DIPHOSPHATE KINASE A,   
REMARK   1  TITL 2 A METASTASIS SUPPRESSOR                                       
REMARK   1  REF    PROTEINS                      V.  46   340 2002               
REMARK   1  REFN                   ISSN 0887-3585                                
REMARK   1  PMID   11835509                                                      
REMARK   1  DOI    10.1002/PROT.10038                                            
REMARK   1 REFERENCE 2                                                           
REMARK   1  AUTH   Y.CHEN,S.GALLOIS-MONTBRUN,B.SCHNEIDER,D.DEVILLE-BONNE,        
REMARK   1  AUTH 2 J.JANIN                                                       
REMARK   1  TITL   NUCLEOTIDE BINDING TO NUCLEOSIDE DIPHOSPHATE KINASES: X-RAY   
REMARK   1  TITL 2 STRUCTURE OF HUMAN NDPK-A IN COMPLEX WITH ADP AND COMPARISON  
REMARK   1  TITL 3 TO PROTEIN KINASES                                            
REMARK   1  REF    J.MOL.BIOL.                   V. 332   915 2003               
REMARK   1  REFN                   ISSN 0022-2836                                
REMARK   1  PMID   12972261                                                      
REMARK   1  DOI    10.1016/J.JMB.2003.07.004                                     
REMARK   2                                                                       
REMARK   2 RESOLUTION.    2.15 ANGSTROMS.                                        
REMARK   3                                                                       
REMARK   3 REFINEMENT.                                                           
REMARK   3   PROGRAM     : REFMAC 5.2                                            
REMARK   3   AUTHORS     : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,               
REMARK   3               : NICHOLLS,WINN,LONG,VAGIN                              
REMARK   3                                                                       
REMARK   3    REFINEMENT TARGET : MAXIMUM LIKELIHOOD                             
REMARK   3                                                                       
REMARK   3  DATA USED IN REFINEMENT.                                             
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15                            
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 17.65                           
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                           
REMARK   3   COMPLETENESS FOR RANGE        (%) : 98.8                            
REMARK   3   NUMBER OF REFLECTIONS             : 30827                           
REMARK   3                                                                       
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                      
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                       
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                           
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.249                            
REMARK   3   R VALUE            (WORKING SET) : 0.247                            
REMARK   3   FREE R VALUE                     : 0.294                            
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.000                            
REMARK   3   FREE R VALUE TEST SET COUNT      : 1639                             
REMARK   3                                                                       
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                   
REMARK   3   TOTAL NUMBER OF BINS USED           : 20                            
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 2.15                          
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.21                          
REMARK   3   REFLECTION IN BIN     (WORKING SET) : 2232                          
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 99.54                         
REMARK   3   BIN R VALUE           (WORKING SET) : 0.2980                        
REMARK   3   BIN FREE R VALUE SET COUNT          : 124                           
REMARK   3   BIN FREE R VALUE                    : 0.3710                        
REMARK   3                                                                       
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                     
REMARK   3   PROTEIN ATOMS            : 3594                                     
REMARK   3   NUCLEIC ACID ATOMS       : 0                                        
REMARK   3   HETEROGEN ATOMS          : 81                                       
REMARK   3   SOLVENT ATOMS            : 190                                      
REMARK   3                                                                       
REMARK   3  B VALUES.                                                            
REMARK   3   FROM WILSON PLOT           (A**2) : 39.08                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 42.20                           
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                        
REMARK   3    B11 (A**2) : -0.69000                                              
REMARK   3    B22 (A**2) : -0.69000                                              
REMARK   3    B33 (A**2) : 1.39000                                               
REMARK   3    B12 (A**2) : 0.00000                                               
REMARK   3    B13 (A**2) : 0.00000                                               
REMARK   3    B23 (A**2) : 0.00000                                               
REMARK   3                                                                       
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.                                  
REMARK   3   ESU BASED ON R VALUE                            (A): 0.272          
REMARK   3   ESU BASED ON FREE R VALUE                       (A): 0.229          
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): 0.197          
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.653          
REMARK   3                                                                       
REMARK   3 CORRELATION COEFFICIENTS.                                             
REMARK   3   CORRELATION COEFFICIENT FO-FC      : 0.926                          
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : 0.894                          
REMARK   3                                                                       
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT       
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  3763 ; 0.010 ; 0.022        
REMARK   3   BOND LENGTHS OTHERS               (A):  3372 ; 0.006 ; 0.020        
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES):  5094 ; 1.299 ; 1.979        
REMARK   3   BOND ANGLES OTHERS          (DEGREES):  7848 ; 0.787 ; 3.000        
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):   450 ; 6.298 ; 5.000        
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):   174 ;35.739 ;23.966        
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):   645 ;14.412 ;15.000        
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):    24 ;22.990 ;15.000        
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):   540 ; 0.073 ; 0.200        
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  4137 ; 0.004 ; 0.020        
REMARK   3   GENERAL PLANES OTHERS             (A):   783 ; 0.001 ; 0.020        
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):   866 ; 0.197 ; 0.200        
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):  3741 ; 0.194 ; 0.200        
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  1829 ; 0.178 ; 0.200        
REMARK   3   NON-BONDED TORSION OTHERS         (A):  1965 ; 0.084 ; 0.200        
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):   222 ; 0.172 ; 0.200        
REMARK   3   H-BOND (X...Y) OTHERS             (A):     2 ; 0.021 ; 0.200        
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):  NULL ;  NULL ;  NULL        
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL        
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):    21 ; 0.388 ; 0.200        
REMARK   3   SYMMETRY VDW OTHERS               (A):   103 ; 0.202 ; 0.200        
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):     6 ; 0.088 ; 0.200        
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL        
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL        
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL        
REMARK   3                                                                       
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT       
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2):  2930 ; 1.132 ; 1.500        
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2):   940 ; 0.100 ; 1.500        
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  3603 ; 1.033 ; 2.000        
REMARK   3   MAIN-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL        
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):  1810 ; 1.514 ; 3.000        
REMARK   3   SIDE-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL        
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):  1491 ; 2.084 ; 4.500        
REMARK   3   SIDE-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL        
REMARK   3   LONG RANGE B REFINED ATOMS     (A**2):  NULL ;  NULL ;  NULL        
REMARK   3   LONG RANGE B OTHER ATOMS       (A**2):  NULL ;  NULL ;  NULL        
REMARK   3                                                                       
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT        
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  NULL ;  NULL ;  NULL        
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):  NULL ;  NULL ;  NULL        
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  NULL ;  NULL ;  NULL        
REMARK   3                                                                       
REMARK   3  NCS RESTRAINTS STATISTICS                                            
REMARK   3   NUMBER OF DIFFERENT NCS GROUPS : NULL                               
REMARK   3                                                                       
REMARK   3  TLS DETAILS                                                          
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                        
REMARK   3                                                                       
REMARK   3  BULK SOLVENT MODELLING.                                              
REMARK   3   METHOD USED : BABINET MODEL WITH MASK                               
REMARK   3   PARAMETERS FOR MASK CALCULATION                                     
REMARK   3   VDW PROBE RADIUS   : 1.20                                           
REMARK   3   ION PROBE RADIUS   : 0.80                                           
REMARK   3   SHRINKAGE RADIUS   : 0.80                                           
REMARK   3                                                                       
REMARK   3  OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING    
REMARK   3  POSITIONS                                                            
REMARK   4                                                                       
REMARK   4 2HVD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                          
REMARK 100                                                                       
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-AUG-06.                   
REMARK 100 THE DEPOSITION ID IS D_1000038807.                                    
REMARK 200                                                                       
REMARK 200 EXPERIMENTAL DETAILS                                                  
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                   
REMARK 200  DATE OF DATA COLLECTION        : 07-MAR-05                           
REMARK 200  TEMPERATURE           (KELVIN) : 100.0                               
REMARK 200  PH                             : 6.0                                 
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                   
REMARK 200                                                                       
REMARK 200  SYNCHROTRON              (Y/N) : Y                                   
REMARK 200  RADIATION SOURCE               : ESRF                                
REMARK 200  BEAMLINE                       : BM30A                               
REMARK 200  X-RAY GENERATOR MODEL          : NULL                                
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                   
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.973                               
REMARK 200  MONOCHROMATOR                  : NULL                                
REMARK 200  OPTICS                         : NULL                                
REMARK 200                                                                       
REMARK 200  DETECTOR TYPE                  : CCD                                 
REMARK 200  DETECTOR MANUFACTURER          : MARRESEARCH                         
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : MOSFLM                              
REMARK 200  DATA SCALING SOFTWARE          : CCP4 (SCALA)                        
REMARK 200                                                                       
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 30827                               
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.150                               
REMARK 200  RESOLUTION RANGE LOW       (A) : 17.650                              
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 0.000                               
REMARK 200                                                                       
REMARK 200 OVERALL.                                                              
REMARK 200  COMPLETENESS FOR RANGE     (%) : 97.2                                
REMARK 200  DATA REDUNDANCY                : 3.200                               
REMARK 200  R MERGE                    (I) : NULL                                
REMARK 200  R SYM                      (I) : 0.08000                             
REMARK 200   FOR THE DATA SET  : 10.2000                             
REMARK 200                                                                       
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                      
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15                      
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.27                      
REMARK 200  COMPLETENESS FOR SHELL     (%) : 99.0                                
REMARK 200  DATA REDUNDANCY IN SHELL       : 3.10                                
REMARK 200  R MERGE FOR SHELL          (I) : NULL                                
REMARK 200  R SYM FOR SHELL            (I) : 0.52000                             
REMARK 200   FOR SHELL         : 3.100                               
REMARK 200                                                                       
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                               
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT         
REMARK 200 SOFTWARE USED: NULL                                                   
REMARK 200 STARTING MODEL: PDB ENTRY 1UCN                                        
REMARK 200                                                                       
REMARK 200 REMARK: NULL                                                          
REMARK 280                                                                       
REMARK 280 CRYSTAL                                                               
REMARK 280 SOLVENT CONTENT, VS   (%): 56.50                                      
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85                      
REMARK 280                                                                       
REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4 M AMMONIUM SULPHATE,10 MM ADP, 20     
REMARK 280  MM MGCL2, 4 MM DTT, 0.1 M MES, PH 6.0, VAPOR DIFFUSION, SITTING      
REMARK 280  DROP, TEMPERATURE 293K                                               
REMARK 290                                                                       
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                             
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2                         
REMARK 290                                                                       
REMARK 290      SYMOP   SYMMETRY                                                 
REMARK 290     NNNMMM   OPERATOR                                                 
REMARK 290       1555   X,Y,Z                                                    
REMARK 290       2555   -X,-Y,Z+1/2                                              
REMARK 290       3555   -Y+1/2,X+1/2,Z+1/4                                       
REMARK 290       4555   Y+1/2,-X+1/2,Z+3/4                                       
REMARK 290       5555   -X+1/2,Y+1/2,-Z+1/4                                      
REMARK 290       6555   X+1/2,-Y+1/2,-Z+3/4                                      
REMARK 290       7555   Y,X,-Z                                                   
REMARK 290       8555   -Y,-X,-Z+1/2                                             
REMARK 290                                                                       
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                      
REMARK 290           MMM -> TRANSLATION VECTOR                                   
REMARK 290                                                                       
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                             
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM              
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                 
REMARK 290 RELATED MOLECULES.                                                    
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000             
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000             
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000             
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000             
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000             
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       44.89450             
REMARK 290   SMTRY1   3  0.000000 -1.000000  0.000000       57.13000             
REMARK 290   SMTRY2   3  1.000000  0.000000  0.000000       57.13000             
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000       22.44725             
REMARK 290   SMTRY1   4  0.000000  1.000000  0.000000       57.13000             
REMARK 290   SMTRY2   4 -1.000000  0.000000  0.000000       57.13000             
REMARK 290   SMTRY3   4  0.000000  0.000000  1.000000       67.34175             
REMARK 290   SMTRY1   5 -1.000000  0.000000  0.000000       57.13000             
REMARK 290   SMTRY2   5  0.000000  1.000000  0.000000       57.13000             
REMARK 290   SMTRY3   5  0.000000  0.000000 -1.000000       22.44725             
REMARK 290   SMTRY1   6  1.000000  0.000000  0.000000       57.13000             
REMARK 290   SMTRY2   6  0.000000 -1.000000  0.000000       57.13000             
REMARK 290   SMTRY3   6  0.000000  0.000000 -1.000000       67.34175             
REMARK 290   SMTRY1   7  0.000000  1.000000  0.000000        0.00000             
REMARK 290   SMTRY2   7  1.000000  0.000000  0.000000        0.00000             
REMARK 290   SMTRY3   7  0.000000  0.000000 -1.000000        0.00000             
REMARK 290   SMTRY1   8  0.000000 -1.000000  0.000000        0.00000             
REMARK 290   SMTRY2   8 -1.000000  0.000000  0.000000        0.00000             
REMARK 290   SMTRY3   8  0.000000  0.000000 -1.000000       44.89450             
REMARK 290                                                                       
REMARK 290 REMARK: NULL                                                          
REMARK 300                                                                       
REMARK 300 BIOMOLECULE: 1                                                        
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                 
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                   
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON                
REMARK 300 BURIED SURFACE AREA.                                                  
REMARK 350                                                                       
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN            
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                 
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS           
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                           
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                                
REMARK 350                                                                       
REMARK 350 BIOMOLECULE: 1                                                        
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC                          
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC                   
REMARK 350 SOFTWARE USED: PISA,PQS                                               
REMARK 350 TOTAL BURIED SURFACE AREA: 21280 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 32710 ANGSTROM**2                        
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -124.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C                                
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000             
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000             
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000             
REMARK 350   BIOMT1   2  0.000000 -1.000000  0.000000      114.26000             
REMARK 350   BIOMT2   2 -1.000000  0.000000  0.000000      114.26000             
REMARK 350   BIOMT3   2  0.000000  0.000000 -1.000000       44.89450             
REMARK 375                                                                       
REMARK 375 SPECIAL POSITION                                                      
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS             
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL           
REMARK 375 POSITIONS.                                                            
REMARK 375                                                                       
REMARK 375 ATOM RES CSSEQI                                                       
REMARK 375      HOH A 161  LIES ON A SPECIAL POSITION.                           
REMARK 375      HOH A 162  LIES ON A SPECIAL POSITION.                           
REMARK 375      HOH B 161  LIES ON A SPECIAL POSITION.                           
REMARK 375      HOH C 161  LIES ON A SPECIAL POSITION.                           
REMARK 465                                                                       
REMARK 465 MISSING RESIDUES                                                      
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                        
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN                
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                 
REMARK 465                                                                       
REMARK 465   M RES C SSSEQI                                                      
REMARK 465     MET A     1                                                       
REMARK 465     MET B     1                                                       
REMARK 465     MET C     1                                                       
REMARK 500                                                                       
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                          
REMARK 500 SUBTOPIC: TORSION ANGLES                                              
REMARK 500                                                                       
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:             
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;                
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                              
REMARK 500                                                                       
REMARK 500 STANDARD TABLE:                                                       
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                     
REMARK 500                                                                       
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-            
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400             
REMARK 500                                                                       
REMARK 500  M RES CSSEQI        PSI       PHI                                    
REMARK 500    ASN A   3      130.41    170.15                                    
REMARK 500    ILE A 116      -26.00     53.99                                    
REMARK 500    ASN B   3      142.30    178.37                                    
REMARK 500    ILE B 110      -51.97   -125.24                                    
REMARK 500    ILE B 116      -19.86     59.18                                    
REMARK 500    ASN C   3      132.67    168.45                                    
REMARK 500    TYR C  52       31.93    -90.87                                    
REMARK 500    ASP C  54        4.10    -66.35                                    
REMARK 500    ILE C 110      -57.73   -127.70                                    
REMARK 500    ILE C 116      -20.45     50.23                                    
REMARK 500                                                                       
REMARK 500 REMARK: NULL                                                          
REMARK 800                                                                       
REMARK 800 SITE                                                                  
REMARK 800 SITE_IDENTIFIER: AC1                                                  
REMARK 800 EVIDENCE_CODE: SOFTWARE                                               
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 160                  
REMARK 800                                                                       
REMARK 800 SITE_IDENTIFIER: AC2                                                  
REMARK 800 EVIDENCE_CODE: SOFTWARE                                               
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 160                  
REMARK 800                                                                       
REMARK 800 SITE_IDENTIFIER: AC3                                                  
REMARK 800 EVIDENCE_CODE: SOFTWARE                                               
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP C 160                  
REMARK 900                                                                       
REMARK 900 RELATED ENTRIES                                                       
REMARK 900 RELATED ID: 2HVE   RELATED DB: PDB                                    
REMARK 900 S120G MUTANT OF HUMAN NUCLEOSIDE DIPHOSPHATE KINASE A COMPLEXED       
REMARK 900 WITH ADP                                                              
REMARK 900 RELATED ID: 1UCN   RELATED DB: PDB                                    
REMARK 900 X-RAY STRUCTURE OF HUMAN F60W/H118G DOUBLE MUTANT OF HUMAN            
REMARK 900 NUCLEOSIDE DIPHOSPHATE KINASE A COMPLEXED WITH ADP AT 2 A RESOLUTION  
REMARK 900 RELATED ID: 1JXV   RELATED DB: PDB                                    
REMARK 900 CRYSTAL STRUCTURE OF HUMAN NUCLEOSIDE DIPHOSPHATE KINASE A            
DBREF  2HVD A    1   152  UNP    P15531   NDKA_HUMAN       1    152              
DBREF  2HVD B    1   152  UNP    P15531   NDKA_HUMAN       1    152              
DBREF  2HVD C    1   152  UNP    P15531   NDKA_HUMAN       1    152              
SEQRES   1 A  152  MET ALA ASN CYS GLU ARG THR PHE ILE ALA ILE LYS PRO           
SEQRES   2 A  152  ASP GLY VAL GLN ARG GLY LEU VAL GLY GLU ILE ILE LYS           
SEQRES   3 A  152  ARG PHE GLU GLN LYS GLY PHE ARG LEU VAL GLY LEU LYS           
SEQRES   4 A  152  PHE MET GLN ALA SER GLU ASP LEU LEU LYS GLU HIS TYR           
SEQRES   5 A  152  VAL ASP LEU LYS ASP ARG PRO PHE PHE ALA GLY LEU VAL           
SEQRES   6 A  152  LYS TYR MET HIS SER GLY PRO VAL VAL ALA MET VAL TRP           
SEQRES   7 A  152  GLU GLY LEU ASN VAL VAL LYS THR GLY ARG VAL MET LEU           
SEQRES   8 A  152  GLY GLU THR ASN PRO ALA ASP SER LYS PRO GLY THR ILE           
SEQRES   9 A  152  ARG GLY ASP PHE CYS ILE GLN VAL GLY ARG ASN ILE ILE           
SEQRES  10 A  152  HIS GLY SER ASP SER VAL GLU SER ALA GLU LYS GLU ILE           
SEQRES  11 A  152  GLY LEU TRP PHE HIS PRO GLU GLU LEU VAL ASP TYR THR           
SEQRES  12 A  152  SER CYS ALA GLN ASN TRP ILE TYR GLU                           
SEQRES   1 B  152  MET ALA ASN CYS GLU ARG THR PHE ILE ALA ILE LYS PRO           
SEQRES   2 B  152  ASP GLY VAL GLN ARG GLY LEU VAL GLY GLU ILE ILE LYS           
SEQRES   3 B  152  ARG PHE GLU GLN LYS GLY PHE ARG LEU VAL GLY LEU LYS           
SEQRES   4 B  152  PHE MET GLN ALA SER GLU ASP LEU LEU LYS GLU HIS TYR           
SEQRES   5 B  152  VAL ASP LEU LYS ASP ARG PRO PHE PHE ALA GLY LEU VAL           
SEQRES   6 B  152  LYS TYR MET HIS SER GLY PRO VAL VAL ALA MET VAL TRP           
SEQRES   7 B  152  GLU GLY LEU ASN VAL VAL LYS THR GLY ARG VAL MET LEU           
SEQRES   8 B  152  GLY GLU THR ASN PRO ALA ASP SER LYS PRO GLY THR ILE           
SEQRES   9 B  152  ARG GLY ASP PHE CYS ILE GLN VAL GLY ARG ASN ILE ILE           
SEQRES  10 B  152  HIS GLY SER ASP SER VAL GLU SER ALA GLU LYS GLU ILE           
SEQRES  11 B  152  GLY LEU TRP PHE HIS PRO GLU GLU LEU VAL ASP TYR THR           
SEQRES  12 B  152  SER CYS ALA GLN ASN TRP ILE TYR GLU                           
SEQRES   1 C  152  MET ALA ASN CYS GLU ARG THR PHE ILE ALA ILE LYS PRO           
SEQRES   2 C  152  ASP GLY VAL GLN ARG GLY LEU VAL GLY GLU ILE ILE LYS           
SEQRES   3 C  152  ARG PHE GLU GLN LYS GLY PHE ARG LEU VAL GLY LEU LYS           
SEQRES   4 C  152  PHE MET GLN ALA SER GLU ASP LEU LEU LYS GLU HIS TYR           
SEQRES   5 C  152  VAL ASP LEU LYS ASP ARG PRO PHE PHE ALA GLY LEU VAL           
SEQRES   6 C  152  LYS TYR MET HIS SER GLY PRO VAL VAL ALA MET VAL TRP           
SEQRES   7 C  152  GLU GLY LEU ASN VAL VAL LYS THR GLY ARG VAL MET LEU           
SEQRES   8 C  152  GLY GLU THR ASN PRO ALA ASP SER LYS PRO GLY THR ILE           
SEQRES   9 C  152  ARG GLY ASP PHE CYS ILE GLN VAL GLY ARG ASN ILE ILE           
SEQRES  10 C  152  HIS GLY SER ASP SER VAL GLU SER ALA GLU LYS GLU ILE           
SEQRES  11 C  152  GLY LEU TRP PHE HIS PRO GLU GLU LEU VAL ASP TYR THR           
SEQRES  12 C  152  SER CYS ALA GLN ASN TRP ILE TYR GLU                           
HET    ADP  A 160      27                                                        
HET    ADP  B 160      27                                                        
HET    ADP  C 160      27                                                        
HETNAM     ADP ADENOSINE-5'-DIPHOSPHATE                                          
FORMUL   4  ADP    3(C10 H15 N5 O10 P2)                                          
FORMUL   7  HOH   *190(H2 O)                                                     
HELIX    1   1 LYS A   12  ARG A   18  1                                   7     
HELIX    2   2 LEU A   20  GLY A   32  1                                  13     
HELIX    3   3 SER A   44  TYR A   52  1                                   9     
HELIX    4   4 VAL A   53  LYS A   56  5                                   4     
HELIX    5   5 PHE A   60  SER A   70  1                                  11     
HELIX    6   6 ASN A   82  GLY A   92  1                                  11     
HELIX    7   7 THR A  103  CYS A  109  1                                   7     
HELIX    8   8 GLN A  111  ASN A  115  5                                   5     
HELIX    9   9 SER A  122  PHE A  134  1                                  13     
HELIX   10  10 ALA A  146  TYR A  151  1                                   6     
HELIX   11  11 LYS B   12  ARG B   18  1                                   7     
HELIX   12  12 LEU B   20  LYS B   31  1                                  12     
HELIX   13  13 SER B   44  TYR B   52  1                                   9     
HELIX   14  14 VAL B   53  LYS B   56  5                                   4     
HELIX   15  15 PHE B   60  SER B   70  1                                  11     
HELIX   16  16 ASN B   82  GLY B   92  1                                  11     
HELIX   17  17 ASN B   95  SER B   99  5                                   5     
HELIX   18  18 THR B  103  CYS B  109  1                                   7     
HELIX   19  19 GLN B  111  ASN B  115  5                                   5     
HELIX   20  20 SER B  122  PHE B  134  1                                  13     
HELIX   21  21 HIS B  135  LEU B  139  5                                   5     
HELIX   22  22 ALA B  146  TYR B  151  1                                   6     
HELIX   23  23 LYS C   12  ARG C   18  1                                   7     
HELIX   24  24 LEU C   20  GLY C   32  1                                  13     
HELIX   25  25 SER C   44  TYR C   52  1                                   9     
HELIX   26  26 VAL C   53  LYS C   56  5                                   4     
HELIX   27  27 PHE C   60  SER C   70  1                                  11     
HELIX   28  28 ASN C   82  GLY C   92  1                                  11     
HELIX   29  29 THR C  103  CYS C  109  1                                   7     
HELIX   30  30 GLN C  111  ASN C  115  5                                   5     
HELIX   31  31 SER C  122  PHE C  134  1                                  13     
HELIX   32  32 HIS C  135  LEU C  139  5                                   5     
HELIX   33  33 ALA C  146  TYR C  151  1                                   6     
SHEET    1   A 4 ARG A  34  MET A  41  0                                         
SHEET    2   A 4 VAL A  73  GLU A  79 -1  O  ALA A  75   N  LYS A  39            
SHEET    3   A 4 ARG A   6  ILE A  11 -1  N  ILE A  11   O  VAL A  74            
SHEET    4   A 4 ILE A 117  GLY A 119 -1  O  HIS A 118   N  ALA A  10            
SHEET    1   B 4 ARG B  34  MET B  41  0                                         
SHEET    2   B 4 VAL B  73  GLU B  79 -1  O  VAL B  77   N  VAL B  36            
SHEET    3   B 4 ARG B   6  ILE B  11 -1  N  ILE B  11   O  VAL B  74            
SHEET    4   B 4 ILE B 117  GLY B 119 -1  O  HIS B 118   N  ALA B  10            
SHEET    1   C 4 ARG C  34  MET C  41  0                                         
SHEET    2   C 4 VAL C  73  GLU C  79 -1  O  VAL C  73   N  MET C  41            
SHEET    3   C 4 ARG C   6  ILE C  11 -1  N  ILE C  11   O  VAL C  74            
SHEET    4   C 4 ILE C 117  GLY C 119 -1  O  HIS C 118   N  ALA C  10            
SSBOND   1 CYS A    4    CYS A    4                          1555   7465  2.06   
SITE     1 AC1  9 LYS A  12  LEU A  55  PHE A  60  LEU A  64                     
SITE     2 AC1  9 ARG A  88  THR A  94  VAL A 112  ASN A 115                     
SITE     3 AC1  9 HOH A 185                                                      
SITE     1 AC2 14 LYS B  12  LEU B  55  PHE B  60  LEU B  64                     
SITE     2 AC2 14 ARG B  88  THR B  94  VAL B 112  ASN B 115                     
SITE     3 AC2 14 HOH B 178  HOH B 180  HOH B 181  HOH B 221                     
SITE     4 AC2 14 HOH B 229  HOH B 230                                           
SITE     1 AC3  9 LYS C  12  TYR C  52  LEU C  55  PHE C  60                     
SITE     2 AC3  9 ARG C  88  THR C  94  VAL C 112  ASN C 115                     
SITE     3 AC3  9 HOH C 202                                                      
CRYST1  114.260  114.260   89.789  90.00  90.00  90.00 P 41 21 2    24           
ORIGX1      1.000000  0.000000  0.000000        0.00000                          
ORIGX2      0.000000  1.000000  0.000000        0.00000                          
ORIGX3      0.000000  0.000000  1.000000        0.00000                          
SCALE1      0.008752  0.000000  0.000000        0.00000                          
SCALE2      0.000000  0.008752  0.000000        0.00000                          
SCALE3      0.000000  0.000000  0.011137        0.00000                          
END