HEADER    TRANSCRIPTION REGULATOR                 26-MAR-08   2K27               
TITLE     SOLUTION STRUCTURE OF HUMAN PAX8 PAIRED BOX DOMAIN                     
COMPND    MOL_ID: 1;                                                             
COMPND   2 MOLECULE: PAIRED BOX PROTEIN PAX-8;                                   
COMPND   3 CHAIN: A;                                                             
COMPND   4 FRAGMENT: PAX8 PAIRED BOX DOMAIN (UNP RESIDUES 1-143);                
COMPND   5 ENGINEERED: YES                                                       
SOURCE    MOL_ID: 1;                                                             
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                    
SOURCE   3 ORGANISM_COMMON: HUMAN;                                               
SOURCE   4 GENE: PAX8;                                                           
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                  
SOURCE   6 EXPRESSION_SYSTEM_STRAIN: BL21-DE3;                                   
SOURCE   7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                               
SOURCE   8 EXPRESSION_SYSTEM_VECTOR: PIVEX2.3;                                   
SOURCE   9 EXPRESSION_SYSTEM_PLASMID: PLYSS                                      
KEYWDS    PAIRED DOMAIN, PAX8, SOLUTION STRUCTURE, TRIPLE FREQUENCY, 3D NMR,     
KEYWDS   2 INDUCED FIT, ALTERNATIVE SPLICING, DEVELOPMENTAL PROTEIN,             
KEYWDS   3 DIFFERENTIATION, DISEASE MUTATION, DNA-BINDING, NUCLEUS, PAIRED BOX,  
KEYWDS   4 PHOSPHOPROTEIN, POLYMORPHISM, TRANSCRIPTION, TRANSCRIPTION            
KEYWDS   5 REGULATION, TRANSCRIPTION REGULATOR                                   
EXPDTA    SOLUTION NMR                                                           
NUMMDL    20                                                                     
AUTHOR    L.CODUTTI,G.ESPOSITO,A.CORAZZA,F.FOGOLARI,G.TELL,C.VASCOTTO,H.VAN      
AUTHOR   2 INGEN,R.BOELENS,P.VIGLINO,F.QUADRIFOGLIO                              
REVDAT   7   14-JUN-23 2K27    1       REMARK                                    
REVDAT   6   19-FEB-20 2K27    1       REMARK SEQADV                             
REVDAT   5   09-JUN-09 2K27    1       REVDAT                                    
REVDAT   4   24-FEB-09 2K27    1       VERSN                                     
REVDAT   3   23-DEC-08 2K27    1       JRNL                                      
REVDAT   2   04-NOV-08 2K27    1       JRNL                                      
REVDAT   1   30-SEP-08 2K27    0                                                 
JRNL        AUTH   L.CODUTTI,H.VAN INGEN,C.VASCOTTO,F.FOGOLARI,A.CORAZZA,        
JRNL        AUTH 2 G.TELL,F.QUADRIFOGLIO,P.VIGLINO,R.BOELENS,G.ESPOSITO          
JRNL        TITL   THE SOLUTION STRUCTURE OF DNA-FREE PAX-8 PAIRED BOX DOMAIN    
JRNL        TITL 2 ACCOUNTS FOR REDOX REGULATION OF TRANSCRIPTIONAL ACTIVITY IN  
JRNL        TITL 3 THE PAX PROTEIN FAMILY.                                       
JRNL        REF    J.BIOL.CHEM.                  V. 283 33321 2008               
JRNL        REFN                   ISSN 0021-9258                                
JRNL        PMID   18829450                                                      
JRNL        DOI    10.1074/JBC.M805717200                                        
REMARK   2                                                                       
REMARK   2 RESOLUTION. NOT APPLICABLE.                                           
REMARK   3                                                                       
REMARK   3 REFINEMENT.                                                           
REMARK   3   PROGRAM     : CYANA 2.1, DISCOVER 2.98                              
REMARK   3   AUTHORS     : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA),            
REMARK   3                 ACCELRYS SOFTWARE INC. (DISCOVER)                     
REMARK   3                                                                       
REMARK   3  OTHER REFINEMENT REMARKS:                                            
REMARK   3  MINIMIZATION WAS PERFORMED BY MEANS OF DISCOVER, WITH 200            
REMARK   3  ITERATIONS USING THE STEEP DESCENT AND 800 ITERATIONS USING THE      
REMARK   3  CONJUGATE GRADIENTS ALGORITHMS. C-TERMINAL SUPERPOSITION IS          
REMARK   3  PERFORMED BETWEEN RESIDUES 87-135 AND THE N-TERMINAL SUPERPOSITION   
REMARK   3  CAN BE PERFORMED BETWEEN 29-62.                                      
REMARK   4                                                                       
REMARK   4 2K27 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                          
REMARK 100                                                                       
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAR-08.                   
REMARK 100 THE DEPOSITION ID IS D_1000100582.                                    
REMARK 210                                                                       
REMARK 210 EXPERIMENTAL DETAILS                                                  
REMARK 210  EXPERIMENT TYPE                : NMR                                 
REMARK 210  TEMPERATURE           (KELVIN) : 298.00                              
REMARK 210  PH                             : 6.2                                 
REMARK 210  IONIC STRENGTH                 : 50                                  
REMARK 210  PRESSURE                       : AMBIENT                             
REMARK 210  SAMPLE CONTENTS                : 0.9 MM [U-100% 13C; U-100% 15N]     
REMARK 210                                   PAX8 PAIRED BOX DOMAIN, 40 UM       
REMARK 210                                   DSS, 50 MM SODIUM PHOSPHATE, 0.1    
REMARK 210                                   % SODIUM AZIDE, 15 MM [U-100% 2H]   
REMARK 210                                   DTT, 90% H2O/10% D2O                
REMARK 210                                                                       
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 2D 1H-15N HSQC; 2D 1H-13C HSQC      
REMARK 210                                   CT; 3D CBCA(CO)NH; 3D C(CO)NH;      
REMARK 210                                   3D HNCO; 3D HNCA; 3D HNCACB; 3D     
REMARK 210                                   HN(CO)CA; 3D HCCH-TOCSY; 3D 1H-     
REMARK 210                                   15N NOESY; 3D 1H-13C NOESY; 3D      
REMARK 210                                   CBCANH; 3D HN(COCA)CB               
REMARK 210  SPECTROMETER FIELD STRENGTH    : 500 MHZ; 750 MHZ                    
REMARK 210  SPECTROMETER MODEL             : AVANCE; AVANCE 2                    
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                              
REMARK 210                                                                       
REMARK 210  STRUCTURE DETERMINATION.                                             
REMARK 210   SOFTWARE USED                 : TALOS (NMR-PIPE 3.5),               
REMARK 210                                   PROCHECKNMR 3.4, TOPSPIN 1.3,       
REMARK 210                                   CARA 1.8.4, AQUA 3.2, WHAT IF       
REMARK 210   METHOD USED                   : MOLECULAR MECHANICS                 
REMARK 210                                                                       
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 300                                 
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                  
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LOWEST          
REMARK 210                                   ENERGY                              
REMARK 210                                                                       
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                    
REMARK 210                                                                       
REMARK 210 REMARK: NULL                                                          
REMARK 215                                                                       
REMARK 215 NMR STUDY                                                             
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION            
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                 
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON               
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                        
REMARK 300                                                                       
REMARK 300 BIOMOLECULE: 1                                                        
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                 
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                   
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON                
REMARK 300 BURIED SURFACE AREA.                                                  
REMARK 350                                                                       
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN            
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                 
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS           
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                           
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                                
REMARK 350                                                                       
REMARK 350 BIOMOLECULE: 1                                                        
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                          
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                      
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000             
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000             
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000             
REMARK 500                                                                       
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                          
REMARK 500 SUBTOPIC: TORSION ANGLES                                              
REMARK 500                                                                       
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:             
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;                
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                              
REMARK 500                                                                       
REMARK 500 STANDARD TABLE:                                                       
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                     
REMARK 500                                                                       
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-            
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400             
REMARK 500                                                                       
REMARK 500  M RES CSSEQI        PSI       PHI                                    
REMARK 500  1 ASN A   4      154.42     75.41                                    
REMARK 500  1 LEU A  16      141.56     70.90                                    
REMARK 500  1 ALA A  19       89.61    -60.26                                    
REMARK 500  1 VAL A  21      -83.60   -112.05                                    
REMARK 500  1 SER A  54     -105.84    -82.28                                    
REMARK 500  1 HIS A  55      -45.26   -154.65                                    
REMARK 500  1 TYR A  65       76.58     56.75                                    
REMARK 500  1 TYR A  66       94.07     68.50                                    
REMARK 500  1 THR A  68       48.08     35.43                                    
REMARK 500  1 ILE A  71       62.63     62.86                                    
REMARK 500  1 ARG A  72       66.63   -161.57                                    
REMARK 500  1 LYS A  80       71.79   -154.49                                    
REMARK 500  1 LEU A 142       79.95   -154.09                                    
REMARK 500  1 SER A 153       89.18   -152.86                                    
REMARK 500  2 SER A   5      -66.17   -155.14                                    
REMARK 500  2 GLN A  15      -62.70   -131.32                                    
REMARK 500  2 ASN A  22       96.21   -164.69                                    
REMARK 500  2 PRO A  27     -162.90    -76.14                                    
REMARK 500  2 HIS A  55      -34.84   -143.03                                    
REMARK 500  2 TYR A  65      -66.77   -159.66                                    
REMARK 500  2 TYR A  66       95.68   -160.47                                    
REMARK 500  2 GLN A  98      -70.68    -72.79                                    
REMARK 500  2 PRO A 100     -169.01    -75.30                                    
REMARK 500  2 THR A 121      -59.86   -154.34                                    
REMARK 500  2 SER A 124      115.33    -20.39                                    
REMARK 500  2 LYS A 135      -72.22    -70.30                                    
REMARK 500  3 HIS A   3      -58.51   -154.78                                    
REMARK 500  3 ASN A   4      157.93     69.90                                    
REMARK 500  3 PHE A  20      -80.08    -73.83                                    
REMARK 500  3 CYS A  45      -29.79    167.81                                    
REMARK 500  3 SER A  54      -88.76    -99.06                                    
REMARK 500  3 HIS A  55      -41.01   -143.97                                    
REMARK 500  3 TYR A  65      115.27     78.87                                    
REMARK 500  3 TYR A  66       75.40     51.00                                    
REMARK 500  3 THR A  68       90.21    -51.08                                    
REMARK 500  3 GLN A 137       39.03    -82.07                                    
REMARK 500  3 LEU A 142       89.18   -155.50                                    
REMARK 500  3 SER A 146       36.62   -146.67                                    
REMARK 500  3 HIS A 158     -168.73    -74.47                                    
REMARK 500  4 ASN A   4      163.20     68.69                                    
REMARK 500  4 ALA A  19     -177.65     63.05                                    
REMARK 500  4 VAL A  21      -81.44   -140.08                                    
REMARK 500  4 LEU A  26      -67.93   -156.42                                    
REMARK 500  4 PRO A  27     -159.37    -79.98                                    
REMARK 500  4 GLU A  28      -36.98    -39.58                                    
REMARK 500  4 SER A  54      -69.41   -104.42                                    
REMARK 500  4 HIS A  55      -42.69   -166.10                                    
REMARK 500  4 TYR A  65      -74.40    -94.23                                    
REMARK 500  4 TYR A  66       36.34   -164.14                                    
REMARK 500  4 GLU A  67     -141.97     51.54                                    
REMARK 500                                                                       
REMARK 500 THIS ENTRY HAS     267 RAMACHANDRAN OUTLIERS.                         
REMARK 500                                                                       
REMARK 500 REMARK: NULL                                                          
REMARK 500                                                                       
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                          
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS                                          
REMARK 500                                                                       
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH           
REMARK 500 CIS AND TRANS CONFORMATION.  CIS BONDS, IF ANY, ARE LISTED            
REMARK 500 ON CISPEP RECORDS.  TRANS IS DEFINED AS 180 +/- 30 AND                
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.                                   
REMARK 500                                 MODEL     OMEGA                       
REMARK 500 ASN A  119     ASP A  120         18       147.91                     
REMARK 500                                                                       
REMARK 500 REMARK: NULL                                                          
REMARK 500                                                                       
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                          
REMARK 500 SUBTOPIC: PLANAR GROUPS                                               
REMARK 500                                                                       
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL                  
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE                     
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN                     
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS                         
REMARK 500 AN RMSD GREATER THAN THIS VALUE                                       
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;                
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                              
REMARK 500                                                                       
REMARK 500  M RES CSSEQI        RMS     TYPE                                     
REMARK 500  2 TYR A  65         0.10    SIDE CHAIN                               
REMARK 500  5 TYR A  66         0.10    SIDE CHAIN                               
REMARK 500  8 TYR A  95         0.18    SIDE CHAIN                               
REMARK 500  9 TYR A  65         0.10    SIDE CHAIN                               
REMARK 500 12 TYR A  65         0.07    SIDE CHAIN                               
REMARK 500 13 TYR A  65         0.07    SIDE CHAIN                               
REMARK 500 14 TYR A  95         0.07    SIDE CHAIN                               
REMARK 500 18 ARG A  33         0.08    SIDE CHAIN                               
REMARK 500 18 TYR A  95         0.08    SIDE CHAIN                               
REMARK 500 20 ARG A  43         0.09    SIDE CHAIN                               
REMARK 500                                                                       
REMARK 500 REMARK: NULL                                                          
REMARK 900                                                                       
REMARK 900 RELATED ENTRIES                                                       
REMARK 900 RELATED ID: 15693   RELATED DB: BMRB                                  
DBREF  2K27 A    1   143  UNP    Q06710   PAX8_HUMAN       1    143              
SEQADV 2K27 MET A  144  UNP  Q06710              EXPRESSION TAG                  
SEQADV 2K27 ASP A  145  UNP  Q06710              EXPRESSION TAG                  
SEQADV 2K27 SER A  146  UNP  Q06710              EXPRESSION TAG                  
SEQADV 2K27 GLY A  147  UNP  Q06710              EXPRESSION TAG                  
SEQADV 2K27 ALA A  148  UNP  Q06710              EXPRESSION TAG                  
SEQADV 2K27 PRO A  149  UNP  Q06710              EXPRESSION TAG                  
SEQADV 2K27 GLY A  150  UNP  Q06710              EXPRESSION TAG                  
SEQADV 2K27 GLY A  151  UNP  Q06710              EXPRESSION TAG                  
SEQADV 2K27 GLY A  152  UNP  Q06710              EXPRESSION TAG                  
SEQADV 2K27 SER A  153  UNP  Q06710              EXPRESSION TAG                  
SEQADV 2K27 HIS A  154  UNP  Q06710              EXPRESSION TAG                  
SEQADV 2K27 HIS A  155  UNP  Q06710              EXPRESSION TAG                  
SEQADV 2K27 HIS A  156  UNP  Q06710              EXPRESSION TAG                  
SEQADV 2K27 HIS A  157  UNP  Q06710              EXPRESSION TAG                  
SEQADV 2K27 HIS A  158  UNP  Q06710              EXPRESSION TAG                  
SEQADV 2K27 HIS A  159  UNP  Q06710              EXPRESSION TAG                  
SEQRES   1 A  159  MET PRO HIS ASN SER ILE ARG SER GLY HIS GLY GLY LEU           
SEQRES   2 A  159  ASN GLN LEU GLY GLY ALA PHE VAL ASN GLY ARG PRO LEU           
SEQRES   3 A  159  PRO GLU VAL VAL ARG GLN ARG ILE VAL ASP LEU ALA HIS           
SEQRES   4 A  159  GLN GLY VAL ARG PRO CYS ASP ILE SER ARG GLN LEU ARG           
SEQRES   5 A  159  VAL SER HIS GLY CYS VAL SER LYS ILE LEU GLY ARG TYR           
SEQRES   6 A  159  TYR GLU THR GLY SER ILE ARG PRO GLY VAL ILE GLY GLY           
SEQRES   7 A  159  SER LYS PRO LYS VAL ALA THR PRO LYS VAL VAL GLU LYS           
SEQRES   8 A  159  ILE GLY ASP TYR LYS ARG GLN ASN PRO THR MET PHE ALA           
SEQRES   9 A  159  TRP GLU ILE ARG ASP ARG LEU LEU ALA GLU GLY VAL CYS           
SEQRES  10 A  159  ASP ASN ASP THR VAL PRO SER VAL SER SER ILE ASN ARG           
SEQRES  11 A  159  ILE ILE ARG THR LYS VAL GLN GLN PRO PHE ASN LEU PRO           
SEQRES  12 A  159  MET ASP SER GLY ALA PRO GLY GLY GLY SER HIS HIS HIS           
SEQRES  13 A  159  HIS HIS HIS                                                   
HELIX    1   1 PRO A   27  GLY A   41  1                                  15     
HELIX    2   2 ARG A   43  ARG A   52  1                                  10     
HELIX    3   3 HIS A   55  GLY A   63  1                                   9     
HELIX    4   4 LYS A   87  ASN A   99  1                                  13     
HELIX    5   5 PHE A  103  GLY A  115  1                                  13     
HELIX    6   6 SER A  124  VAL A  136  1                                  13     
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1           
ORIGX1      1.000000  0.000000  0.000000        0.00000                          
ORIGX2      0.000000  1.000000  0.000000        0.00000                          
ORIGX3      0.000000  0.000000  1.000000        0.00000                          
SCALE1      1.000000  0.000000  0.000000        0.00000                          
SCALE2      0.000000  1.000000  0.000000        0.00000                          
SCALE3      0.000000  0.000000  1.000000        0.00000                          
MODEL        1                                                                   
MODEL        2                                                                   
MODEL        3                                                                   
MODEL        4                                                                   
MODEL        5                                                                   
MODEL        6                                                                   
MODEL        7                                                                   
MODEL        8                                                                   
MODEL        9                                                                   
MODEL       10                                                                   
MODEL       11                                                                   
MODEL       12                                                                   
MODEL       13                                                                   
MODEL       14                                                                   
MODEL       15                                                                   
MODEL       16                                                                   
MODEL       17                                                                   
MODEL       18                                                                   
MODEL       19                                                                   
MODEL       20                                                                   
END