HEADER    HYDROLASE                               05-DEC-07   2ZE4               
TITLE     CRYSTAL STRUCTURE OF PHOSPHOLIPASE D FROM STREPTOMYCES                 
TITLE    2 ANTIBIOTICUS                                                          
COMPND    MOL_ID: 1;                                                             
COMPND   2 MOLECULE: PHOSPHOLIPASE D;                                            
COMPND   3 CHAIN: A;                                                             
COMPND   4 SYNONYM: CHOLINE PHOSPHATASE;                                         
COMPND   5 EC: 3.1.4.4;                                                          
COMPND   6 ENGINEERED: YES                                                       
SOURCE    MOL_ID: 1;                                                             
SOURCE   2 ORGANISM_SCIENTIFIC: STREPTOMYCES ANTIBIOTICUS;                       
SOURCE   3 ORGANISM_TAXID: 1890;                                                 
SOURCE   4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);                        
SOURCE   5 EXPRESSION_SYSTEM_TAXID: 469008;                                      
SOURCE   6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);                                  
SOURCE   7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                               
SOURCE   8 EXPRESSION_SYSTEM_PLASMID: PPELB-PLD3                                 
KEYWDS    ALPHA-BETA-BETA-ALPHA-SANDWICH, HYDROLASE, LIPID                       
KEYWDS   2 DEGRADATION, SECRETED                                                 
EXPDTA    X-RAY DIFFRACTION                                                      
AUTHOR    A.SUZUKI,K.KAKUNO,R.SAITO,Y.IWASAKI,T.YAMANE,T.YAMANE                  
REVDAT   3   24-FEB-09 2ZE4    1       VERSN                                     
REVDAT   2   24-JUN-08 2ZE4    1       REMARK                                    
REVDAT   1   25-DEC-07 2ZE4    0                                                 
JRNL        AUTH   A.SUZUKI,K.KAKUNO,R.SAITO,Y.IWASAKI,T.YAMANE,                 
JRNL        AUTH 2 T.YAMANE                                                      
JRNL        TITL   CRYSTAL STRUCTURE OF PHOSPHOLIPASE D FROM                     
JRNL        TITL 2 STREPTOMYCES ANTIBIOTICUS                                     
JRNL        REF    TO BE PUBLISHED                                               
JRNL        REFN                                                                 
REMARK   1                                                                       
REMARK   1 REFERENCE 1                                                           
REMARK   1  AUTH   A.SUZUKI,K.KAKUNO,Y.IWASAKI,T.YAMANE,T.YAMANE                 
REMARK   1  TITL   CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION             
REMARK   1  TITL 2 STUDIES OF PHOSPHOLIPASE D FROM STREPTOMYCES                  
REMARK   1  TITL 3 ANTIBIOTICUS                                                  
REMARK   1  REF    ACTA CRYSTALLOGR.,SECT.D      V.  55   317 1999               
REMARK   1  REFN                   ISSN 0907-4449                                
REMARK   1  PMID   10089437                                                      
REMARK   1  DOI    10.1107/S0907444998010592                                     
REMARK   1 REFERENCE 2                                                           
REMARK   1  AUTH   A.MASAYAMA,T.TAKAHASHI,K.TSUKADA,S.NISHIKAWA,                 
REMARK   1  AUTH 2 R.TAKAHASHI,M.ADACHI,K.KOGA,A.SUZUKI,T.YAMANE,                
REMARK   1  AUTH 3 H.NAKANO,Y.IWASAKI                                            
REMARK   1  TITL   STREPTOMYCES PHOSPHOLIPASE D MUTANTS WITH ALTERED             
REMARK   1  TITL 2 SUBSTRATE SPECIFICITY CAPABLE OF                              
REMARK   1  TITL 3 PHOSPHATIDYLINOSITOL SYNTHESIS                                
REMARK   1  REF    CHEMBIOCHEM                   V.   9   974 2008               
REMARK   1  REFN                   ISSN 1439-4227                                
REMARK   1  PMID   18338352                                                      
REMARK   1  DOI    10.1002/CBIC.200700528                                        
REMARK   2                                                                       
REMARK   2 RESOLUTION.    2.50 ANGSTROMS.                                        
REMARK   3                                                                       
REMARK   3 REFINEMENT.                                                           
REMARK   3   PROGRAM     : REFMAC 5.3.0040                                       
REMARK   3   AUTHORS     : MURSHUDOV,VAGIN,DODSON                                
REMARK   3                                                                       
REMARK   3    REFINEMENT TARGET : MAXIMUM LIKELIHOOD                             
REMARK   3                                                                       
REMARK   3  DATA USED IN REFINEMENT.                                             
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50                            
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 64.55                           
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                           
REMARK   3   COMPLETENESS FOR RANGE        (%) : 90.7                            
REMARK   3   NUMBER OF REFLECTIONS             : 15916                           
REMARK   3                                                                       
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                      
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                       
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                           
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.124                            
REMARK   3   R VALUE            (WORKING SET) : 0.121                            
REMARK   3   FREE R VALUE                     : 0.171                            
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.100                            
REMARK   3   FREE R VALUE TEST SET COUNT      : 856                              
REMARK   3                                                                       
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                   
REMARK   3   TOTAL NUMBER OF BINS USED           : 20                            
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 2.50                          
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.56                          
REMARK   3   REFLECTION IN BIN     (WORKING SET) : 1012                          
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 79.53                         
REMARK   3   BIN R VALUE           (WORKING SET) : 0.1530                        
REMARK   3   BIN FREE R VALUE SET COUNT          : 64                            
REMARK   3   BIN FREE R VALUE                    : 0.2540                        
REMARK   3                                                                       
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                     
REMARK   3   PROTEIN ATOMS            : 3743                                     
REMARK   3   NUCLEIC ACID ATOMS       : 0                                        
REMARK   3   HETEROGEN ATOMS          : 12                                       
REMARK   3   SOLVENT ATOMS            : 204                                      
REMARK   3                                                                       
REMARK   3  B VALUES.                                                            
REMARK   3   FROM WILSON PLOT           (A**2) : 26.20                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 18.34                           
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                        
REMARK   3    B11 (A**2) : -0.16000                                              
REMARK   3    B22 (A**2) : 1.19000                                               
REMARK   3    B33 (A**2) : -1.03000                                              
REMARK   3    B12 (A**2) : 0.00000                                               
REMARK   3    B13 (A**2) : 0.00000                                               
REMARK   3    B23 (A**2) : 0.00000                                               
REMARK   3                                                                       
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.                                  
REMARK   3   ESU BASED ON R VALUE                            (A): 2.239          
REMARK   3   ESU BASED ON FREE R VALUE                       (A): 0.224          
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): 0.134          
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.979          
REMARK   3                                                                       
REMARK   3 CORRELATION COEFFICIENTS.                                             
REMARK   3   CORRELATION COEFFICIENT FO-FC      : 0.971                          
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : 0.948                          
REMARK   3                                                                       
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT       
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  3844 ; 0.021 ; 0.021        
REMARK   3   BOND LENGTHS OTHERS               (A):  NULL ;  NULL ;  NULL        
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES):  5248 ; 1.917 ; 1.964        
REMARK   3   BOND ANGLES OTHERS          (DEGREES):  NULL ;  NULL ;  NULL        
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):   500 ; 7.078 ; 5.000        
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):   158 ;37.624 ;24.114        
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):   586 ;17.006 ;15.000        
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):    26 ;24.565 ;15.000        
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):   585 ; 0.115 ; 0.200        
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  2953 ; 0.008 ; 0.020        
REMARK   3   GENERAL PLANES OTHERS             (A):  NULL ;  NULL ;  NULL        
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):  1659 ; 0.221 ; 0.200        
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):  NULL ;  NULL ;  NULL        
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  2605 ; 0.313 ; 0.200        
REMARK   3   NON-BONDED TORSION OTHERS         (A):  NULL ;  NULL ;  NULL        
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):   245 ; 0.125 ; 0.200        
REMARK   3   H-BOND (X...Y) OTHERS             (A):  NULL ;  NULL ;  NULL        
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):  NULL ;  NULL ;  NULL        
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL        
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):    11 ; 0.168 ; 0.200        
REMARK   3   SYMMETRY VDW OTHERS               (A):  NULL ;  NULL ;  NULL        
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):     5 ; 0.117 ; 0.200        
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL        
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL        
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL        
REMARK   3                                                                       
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT       
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2):  2547 ; 1.144 ; 1.500        
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL        
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  3995 ; 1.942 ; 2.000        
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):  1480 ; 3.159 ; 3.000        
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):  1253 ; 5.296 ; 4.500        
REMARK   3                                                                       
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT        
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  NULL ;  NULL ;  NULL        
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):  NULL ;  NULL ;  NULL        
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  NULL ;  NULL ;  NULL        
REMARK   3                                                                       
REMARK   3  NCS RESTRAINTS STATISTICS                                            
REMARK   3   NUMBER OF DIFFERENT NCS GROUPS : NULL                               
REMARK   3                                                                       
REMARK   3  TLS DETAILS                                                          
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                        
REMARK   3                                                                       
REMARK   3  BULK SOLVENT MODELLING.                                              
REMARK   3   METHOD USED : MASK                                                  
REMARK   3   PARAMETERS FOR MASK CALCULATION                                     
REMARK   3   VDW PROBE RADIUS   : 1.20                                           
REMARK   3   ION PROBE RADIUS   : 0.80                                           
REMARK   3   SHRINKAGE RADIUS   : 0.80                                           
REMARK   3                                                                       
REMARK   3  OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE           
REMARK   3  RIDING POSITIONS                                                     
REMARK   4                                                                       
REMARK   4 2ZE4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                          
REMARK 100                                                                       
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-DEC-07.                   
REMARK 100 THE RCSB ID CODE IS RCSB027856.                                       
REMARK 200                                                                       
REMARK 200 EXPERIMENTAL DETAILS                                                  
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                   
REMARK 200  DATE OF DATA COLLECTION        : 08-DEC-97                           
REMARK 200  TEMPERATURE           (KELVIN) : 100                                 
REMARK 200  PH                             : 6.0                                 
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                   
REMARK 200                                                                       
REMARK 200  SYNCHROTRON              (Y/N) : Y                                   
REMARK 200  RADIATION SOURCE               : SPRING-8                            
REMARK 200  BEAMLINE                       : BL41XU                              
REMARK 200  X-RAY GENERATOR MODEL          : NULL                                
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                   
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.00                                
REMARK 200  MONOCHROMATOR                  : DOUBLE-CRYSTAL                      
REMARK 200  OPTICS                         : MIRRORS                             
REMARK 200                                                                       
REMARK 200  DETECTOR TYPE                  : IMAGE PLATE                         
REMARK 200  DETECTOR MANUFACTURER          : FUJI                                
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : DENZO                               
REMARK 200  DATA SCALING SOFTWARE          : SCALEPACK                           
REMARK 200                                                                       
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 17415                               
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.500                               
REMARK 200  RESOLUTION RANGE LOW       (A) : 100.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 0.000                               
REMARK 200                                                                       
REMARK 200 OVERALL.                                                              
REMARK 200  COMPLETENESS FOR RANGE     (%) : 90.0                                
REMARK 200  DATA REDUNDANCY                : 2.900                               
REMARK 200  R MERGE                    (I) : 0.05600                             
REMARK 200  R SYM                      (I) : NULL                                
REMARK 200   FOR THE DATA SET  : 14.1000                             
REMARK 200                                                                       
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                      
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50                      
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.59                      
REMARK 200  COMPLETENESS FOR SHELL     (%) : 78.6                                
REMARK 200  DATA REDUNDANCY IN SHELL       : 2.40                                
REMARK 200  R MERGE FOR SHELL          (I) : 0.15100                             
REMARK 200  R SYM FOR SHELL            (I) : NULL                                
REMARK 200   FOR SHELL         : NULL                                
REMARK 200                                                                       
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                               
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR                           
REMARK 200 SOFTWARE USED: MLPHARE                                                
REMARK 200 STARTING MODEL: NULL                                                  
REMARK 200                                                                       
REMARK 200 REMARK: NULL                                                          
REMARK 280                                                                       
REMARK 280 CRYSTAL                                                               
REMARK 280 SOLVENT CONTENT, VS   (%): 50.80                                      
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50                      
REMARK 280                                                                       
REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 6000, 0.1M MES, PH 6.0,           
REMARK 280  VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K                      
REMARK 290                                                                       
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                             
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21                        
REMARK 290                                                                       
REMARK 290      SYMOP   SYMMETRY                                                 
REMARK 290     NNNMMM   OPERATOR                                                 
REMARK 290       1555   X,Y,Z                                                    
REMARK 290       2555   -X+1/2,-Y,Z+1/2                                          
REMARK 290       3555   -X,Y+1/2,-Z+1/2                                          
REMARK 290       4555   X+1/2,-Y+1/2,-Z                                          
REMARK 290                                                                       
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                      
REMARK 290           MMM -> TRANSLATION VECTOR                                   
REMARK 290                                                                       
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                             
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM              
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                 
REMARK 290 RELATED MOLECULES.                                                    
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000             
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000             
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000             
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000       30.50200             
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000             
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       49.67150             
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000        0.00000             
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       42.50400             
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000       49.67150             
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000       30.50200             
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000       42.50400             
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000             
REMARK 290                                                                       
REMARK 290 REMARK: NULL                                                          
REMARK 300                                                                       
REMARK 300 BIOMOLECULE: 1                                                        
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                 
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                   
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON                
REMARK 300 BURIED SURFACE AREA.                                                  
REMARK 350                                                                       
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN            
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                 
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS           
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                           
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                                
REMARK 350                                                                       
REMARK 350 BIOMOLECULE: 1                                                        
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                          
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC                   
REMARK 350 SOFTWARE USED: PISA                                                   
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                      
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000             
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000             
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000             
REMARK 465                                                                       
REMARK 465 MISSING RESIDUES                                                      
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                        
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN                
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                 
REMARK 465                                                                       
REMARK 465   M RES C SSSEQI                                                      
REMARK 465     ALA A     1                                                       
REMARK 465     ASP A     2                                                       
REMARK 465     THR A     3                                                       
REMARK 465     ALA A   505                                                       
REMARK 465     ARG A   506                                                       
REMARK 465     GLN A   507                                                       
REMARK 465     ALA A   508                                                       
REMARK 465     GLY A   509                                                       
REMARK 500                                                                       
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                          
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS                                       
REMARK 500                                                                       
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES               
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE                
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN                
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                  
REMARK 500                                                                       
REMARK 500 STANDARD TABLE:                                                       
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)                
REMARK 500                                                                       
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                         
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                      
REMARK 500                                                                       
REMARK 500  M RES CSSEQI ATM1   RES CSSEQI ATM2   DEVIATION                      
REMARK 500    SER A 282   CB    SER A 282   OG     -0.079                        
REMARK 500                                                                       
REMARK 500 REMARK: NULL                                                          
REMARK 500                                                                       
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                          
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                        
REMARK 500                                                                       
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES               
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE                
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN                
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                  
REMARK 500                                                                       
REMARK 500 STANDARD TABLE:                                                       
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)               
REMARK 500                                                                       
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                         
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                      
REMARK 500                                                                       
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                      
REMARK 500    PRO A   5   C   -  N   -  CA  ANGL. DEV. = -10.3 DEGREES           
REMARK 500    SER A 282   N   -  CA  -  CB  ANGL. DEV. =  -9.3 DEGREES           
REMARK 500    ASP A 373   CB  -  CG  -  OD2 ANGL. DEV. =  -5.7 DEGREES           
REMARK 500                                                                       
REMARK 500 REMARK: NULL                                                          
REMARK 500                                                                       
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                          
REMARK 500 SUBTOPIC: TORSION ANGLES                                              
REMARK 500                                                                       
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:             
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;                
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                              
REMARK 500                                                                       
REMARK 500 STANDARD TABLE:                                                       
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                     
REMARK 500                                                                       
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-            
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400             
REMARK 500                                                                       
REMARK 500  M RES CSSEQI        PSI       PHI                                    
REMARK 500    GLN A  29      131.95   -172.93                                    
REMARK 500    ASP A  42       69.68   -154.35                                    
REMARK 500    SER A 113       70.36   -118.93                                    
REMARK 500    LEU A 164       60.76     60.46                                    
REMARK 500    PRO A 257      128.50    -27.26                                    
REMARK 500    HIS A 286       76.83   -155.66                                    
REMARK 500    ALA A 307       38.29   -142.18                                    
REMARK 500    SER A 330      -49.87   -136.23                                    
REMARK 500    SER A 451      -38.41   -137.86                                    
REMARK 500    SER A 474      114.49   -167.25                                    
REMARK 500    LEU A 485      -54.30   -137.04                                    
REMARK 500                                                                       
REMARK 500 REMARK: NULL                                                          
REMARK 500                                                                       
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                          
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS                                          
REMARK 500                                                                       
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH           
REMARK 500 CIS AND TRANS CONFORMATION.  CIS BONDS, IF ANY, ARE LISTED            
REMARK 500 ON CISPEP RECORDS.  TRANS IS DEFINED AS 180 +/- 30 AND                
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.                                   
REMARK 500                                 MODEL     OMEGA                       
REMARK 500 GLY A  254     SER A  255                  148.45                     
REMARK 500                                                                       
REMARK 500 REMARK: NULL                                                          
REMARK 800                                                                       
REMARK 800 SITE                                                                  
REMARK 800 SITE_IDENTIFIER: AC1                                                  
REMARK 800 EVIDENCE_CODE: SOFTWARE                                               
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 510                  
REMARK 900                                                                       
REMARK 900 RELATED ENTRIES                                                       
REMARK 900 RELATED ID: 2ZE9   RELATED DB: PDB                                    
REMARK 900 H168A MUTANT OF PHOSPHOLIPASE D IN COMPLEX WITH                       
REMARK 900 PHOSPHATIDYLCHOLINE                                                   
REMARK 999                                                                       
REMARK 999 SEQUENCE                                                              
REMARK 999 THERE ARE DIFFERENCES BETWEEN THE SEQRES AND THE SEQUENCE             
REMARK 999 DATABASE. ACCORDING TO THE DEPOSITOR, THE SEQUENCE IN                 
REMARK 999 Q53728 CONTAINS SOME ERRORS AND RESIDUE NUMBER 107 IS SER,            
REMARK 999 211 IS ARG.                                                           
REMARK 999 THESE ERRORS WILL BE FIXED LATER.                                     
DBREF  2ZE4 A    1   509  UNP    Q53728   PLD_STRAT       48    556              
SEQADV 2ZE4 SER A  107  UNP  Q53728    VAL   154 SEE REMARK 999                  
SEQADV 2ZE4 ARG A  211  UNP  Q53728    ALA   258 SEE REMARK 999                  
SEQRES   1 A  509  ALA ASP THR PRO PRO THR PRO HIS LEU ASP ALA ILE GLU           
SEQRES   2 A  509  ARG SER LEU ARG ASP THR SER PRO GLY LEU GLU GLY SER           
SEQRES   3 A  509  VAL TRP GLN ARG THR ASP GLY ASN ARG LEU ASP ALA PRO           
SEQRES   4 A  509  ASP GLY ASP PRO ALA GLY TRP LEU LEU GLN THR PRO GLY           
SEQRES   5 A  509  CYS TRP GLY ASP ALA GLY CYS LYS ASP ARG ALA GLY THR           
SEQRES   6 A  509  ARG ARG LEU LEU ASP LYS MET THR ARG ASN ILE ALA ASP           
SEQRES   7 A  509  ALA ARG HIS THR VAL ASP ILE SER SER LEU ALA PRO PHE           
SEQRES   8 A  509  PRO ASN GLY GLY PHE GLU ASP ALA VAL VAL ASP GLY LEU           
SEQRES   9 A  509  LYS ALA SER VAL ALA ALA GLY HIS SER PRO ARG VAL ARG           
SEQRES  10 A  509  ILE LEU VAL GLY ALA ALA PRO ILE TYR HIS LEU ASN VAL           
SEQRES  11 A  509  VAL PRO SER ARG TYR ARG ASP GLU LEU ILE GLY LYS LEU           
SEQRES  12 A  509  GLY ALA ALA ALA GLY LYS VAL THR LEU ASN VAL ALA SER           
SEQRES  13 A  509  MET THR THR SER LYS THR SER LEU SER TRP ASN HIS SER           
SEQRES  14 A  509  LYS LEU LEU VAL VAL ASP GLY LYS THR ALA ILE THR GLY           
SEQRES  15 A  509  GLY ILE ASN GLY TRP LYS ASP ASP TYR LEU ASP THR ALA           
SEQRES  16 A  509  HIS PRO VAL SER ASP VAL ASP MET ALA LEU SER GLY PRO           
SEQRES  17 A  509  ALA ALA ARG SER ALA GLY LYS TYR LEU ASP THR LEU TRP           
SEQRES  18 A  509  ASP TRP THR CYS ARG ASN ALA SER ASP PRO ALA LYS VAL           
SEQRES  19 A  509  TRP LEU ALA THR SER ASN GLY ALA SER CYS MET PRO SER           
SEQRES  20 A  509  MET GLU GLN ASP GLU ALA GLY SER ALA PRO ALA GLU PRO           
SEQRES  21 A  509  THR GLY ASP VAL PRO VAL ILE ALA VAL GLY GLY LEU GLY           
SEQRES  22 A  509  VAL GLY ILE LYS GLU SER ASP PRO SER SER GLY TYR HIS           
SEQRES  23 A  509  PRO ASP LEU PRO THR ALA PRO ASP THR LYS CYS THR VAL           
SEQRES  24 A  509  GLY LEU HIS ASP ASN THR ASN ALA ASP ARG ASP TYR ASP           
SEQRES  25 A  509  THR VAL ASN PRO GLU GLU ASN ALA LEU ARG SER LEU ILE           
SEQRES  26 A  509  ALA SER ALA ARG SER HIS VAL GLU ILE SER GLN GLN ASP           
SEQRES  27 A  509  LEU ASN ALA THR CYS PRO PRO LEU PRO ARG TYR ASP ILE           
SEQRES  28 A  509  ARG THR TYR ASP THR LEU ALA GLY LYS LEU ALA ALA GLY           
SEQRES  29 A  509  VAL LYS VAL ARG ILE VAL VAL SER ASP PRO ALA ASN ARG           
SEQRES  30 A  509  GLY ALA VAL GLY SER GLY GLY TYR SER GLN ILE LYS SER           
SEQRES  31 A  509  LEU ASP GLU ILE SER ASP THR LEU ARG THR ARG LEU VAL           
SEQRES  32 A  509  ALA LEU THR GLY ASP ASN GLU LYS ALA SER ARG ALA LEU           
SEQRES  33 A  509  CYS GLY ASN LEU GLN LEU ALA SER PHE ARG SER SER ASP           
SEQRES  34 A  509  ALA ALA LYS TRP ALA ASP GLY LYS PRO TYR ALA LEU HIS           
SEQRES  35 A  509  HIS LYS LEU VAL SER VAL ASP ASP SER ALA PHE TYR ILE           
SEQRES  36 A  509  GLY SER LYS ASN LEU TYR PRO ALA TRP LEU GLN ASP PHE           
SEQRES  37 A  509  GLY TYR ILE VAL GLU SER PRO ALA ALA ALA GLN GLN LEU           
SEQRES  38 A  509  LYS THR GLU LEU LEU ASP PRO GLU TRP LYS TYR SER GLN           
SEQRES  39 A  509  GLN ALA ALA ALA THR PRO ALA GLY CYS PRO ALA ARG GLN           
SEQRES  40 A  509  ALA GLY                                                       
HET    MES  A 510      12                                                        
HETNAM     MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID                              
FORMUL   2  MES    C6 H13 N O4 S                                                 
FORMUL   3  HOH   *204(H2 O)                                                     
HELIX    1   1 THR A    6  SER A   20  1                                  15     
HELIX    2   2 PRO A   21  GLU A   24  5                                   4     
HELIX    3   3 ARG A   62  ASP A   78  1                                  17     
HELIX    4   4 ASN A   93  ALA A  110  1                                  18     
HELIX    5   5 VAL A  131  GLY A  144  1                                  14     
HELIX    6   6 ALA A  145  VAL A  150  5                                   6     
HELIX    7   7 TRP A  187  LEU A  192  1                                   6     
HELIX    8   8 GLY A  207  ALA A  228  1                                  22     
HELIX    9   9 SER A  247  GLY A  254  1                                   8     
HELIX   10  10 ASP A  308  ASN A  315  1                                   8     
HELIX   11  11 ASN A  315  SER A  327  1                                  13     
HELIX   12  12 ASP A  350  ALA A  363  1                                  14     
HELIX   13  13 ASP A  373  ARG A  377  5                                   5     
HELIX   14  14 LEU A  391  GLY A  407  1                                  17     
HELIX   15  15 ASP A  408  ASN A  419  1                                  12     
HELIX   16  16 SER A  474  LEU A  485  1                                  12     
HELIX   17  17 LEU A  485  GLN A  494  1                                  10     
HELIX   18  18 GLN A  495  ALA A  497  5                                   3     
SHEET    1   A 8 LEU A  47  THR A  50  0                                         
SHEET    2   A 8 ASP A 200  SER A 206 -1  O  ASP A 200   N  THR A  50            
SHEET    3   A 8 THR A 178  GLY A 182 -1  N  ALA A 179   O  LEU A 205            
SHEET    4   A 8 LEU A 171  VAL A 174 -1  N  VAL A 174   O  THR A 178            
SHEET    5   A 8 THR A  82  LEU A  88 -1  N  ASP A  84   O  VAL A 173            
SHEET    6   A 8 ARG A 115  GLY A 121  1  O  ARG A 117   N  ILE A  85            
SHEET    7   A 8 THR A 151  SER A 160  1  O  THR A 151   N  VAL A 116            
SHEET    8   A 8 VAL A 234  THR A 238 -1  O  ALA A 237   N  VAL A 154            
SHEET    1   B15 SER A 165  TRP A 166  0                                         
SHEET    2   B15 THR A 151  SER A 160 -1  N  SER A 160   O  SER A 165            
SHEET    3   B15 ARG A 115  GLY A 121  1  N  VAL A 116   O  THR A 151            
SHEET    4   B15 THR A  82  LEU A  88  1  N  ILE A  85   O  ARG A 117            
SHEET    5   B15 LEU A 171  VAL A 174 -1  O  VAL A 173   N  ASP A  84            
SHEET    6   B15 THR A 178  GLY A 182 -1  O  THR A 178   N  VAL A 174            
SHEET    7   B15 ASP A 200  SER A 206 -1  O  LEU A 205   N  ALA A 179            
SHEET    8   B15 TRP A  28  LEU A  36 -1  N  ARG A  35   O  SER A 206            
SHEET    9   B15 VAL A 264  LEU A 272 -1  O  ALA A 268   N  GLN A  29            
SHEET   10   B15 GLN A 466  GLU A 473 -1  O  ILE A 471   N  ILE A 267            
SHEET   11   B15 ALA A 452  GLY A 456 -1  N  ILE A 455   O  TYR A 470            
SHEET   12   B15 LYS A 444  VAL A 448 -1  N  VAL A 448   O  ALA A 452            
SHEET   13   B15 HIS A 331  GLN A 336 -1  N  GLU A 333   O  SER A 447            
SHEET   14   B15 LYS A 366  VAL A 371  1  O  ARG A 368   N  ILE A 334            
SHEET   15   B15 LEU A 420  SER A 424  1  O  GLN A 421   N  ILE A 369            
SSBOND   1 CYS A   53    CYS A   59                          1555   1555  2.01   
SSBOND   2 CYS A  225    CYS A  244                          1555   1555  2.03   
SSBOND   3 CYS A  297    CYS A  343                          1555   1555  2.03   
SSBOND   4 CYS A  417    CYS A  503                          1555   1555  2.01   
CISPEP   1 THR A   50    PRO A   51          0         0.18                      
CISPEP   2 ALA A   89    PRO A   90          0         3.27                      
CISPEP   3 CYS A  343    PRO A  344          0       -11.10                      
CISPEP   4 PRO A  344    PRO A  345          0         3.04                      
SITE     1 AC1  4 SER A 156  ALA A 232  LYS A 233  HOH A 596                     
CRYST1   61.004   85.008   99.343  90.00  90.00  90.00 P 21 21 21    4           
ORIGX1      1.000000  0.000000  0.000000        0.00000                          
ORIGX2      0.000000  1.000000  0.000000        0.00000                          
ORIGX3      0.000000  0.000000  1.000000        0.00000                          
SCALE1      0.016392  0.000000  0.000000        0.00000                          
SCALE2      0.000000  0.011764  0.000000        0.00000                          
SCALE3      0.000000  0.000000  0.010066        0.00000                          
END