HEADER    STRUCTURAL GENOMICS, UNKNOWN FUNCTION   05-DEC-07   3BK5               
TITLE     CRYSTAL STRUCTURE OF PUTATIVE OUTER MEMBRANE LIPOPROTEIN-SORTING       
TITLE    2 PROTEIN DOMAIN FROM VIBRIO PARAHAEMOLYTICUS                           
COMPND    MOL_ID: 1;                                                             
COMPND   2 MOLECULE: PUTATIVE OUTER MEMBRANE LIPOPROTEIN-SORTING PROTEIN;        
COMPND   3 CHAIN: A;                                                             
COMPND   4 FRAGMENT: RESIDUES 28-261;                                            
COMPND   5 ENGINEERED: YES                                                       
SOURCE    MOL_ID: 1;                                                             
SOURCE   2 ORGANISM_SCIENTIFIC: VIBRIO PARAHAEMOLYTICUS RIMD 2210633;            
SOURCE   3 ORGANISM_TAXID: 223926;                                               
SOURCE   4 STRAIN: RIMD 2210633 / SEROTYPE O3:K6;                                
SOURCE   5 GENE: VP1287;                                                         
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21;                             
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 511693;                                      
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: BL21;                                       
SOURCE   9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                               
SOURCE  10 EXPRESSION_SYSTEM_PLASMID: PDM68                                      
KEYWDS    PUTATIVE OUTER MEMBRANE PROTEIN DOMAIN, PSI-2, PROTEIN STRUCTURE       
KEYWDS   2 INITIATIVE, STRUCTURAL GENOMICS, MIDWEST CENTER FOR STRUCTURAL        
KEYWDS   3 GENOMICS (MCSG), UNKNOWN FUNCTION                                     
EXPDTA    X-RAY DIFFRACTION                                                      
AUTHOR    R.WU,J.ABDULLAH,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL GENOMICS    
AUTHOR   2 (MCSG)                                                                
REVDAT   3   13-JUL-11 3BK5    1       VERSN                                     
REVDAT   2   24-FEB-09 3BK5    1       VERSN                                     
REVDAT   1   05-FEB-08 3BK5    0                                                 
JRNL        AUTH   R.WU,J.ABDULLAH,A.JOACHIMIAK                                  
JRNL        TITL   THE CRYSTAL STRUCTURE OF PUTATIVE OUTER MEMBRANE              
JRNL        TITL 2 LIPOPROTEIN-SORTING PROTEIN DOMAIN FROM VIBRIO                
JRNL        TITL 3 PARAHAEMOLYTICUS.                                             
JRNL        REF    TO BE PUBLISHED                                               
JRNL        REFN                                                                 
REMARK   2                                                                       
REMARK   2 RESOLUTION.    2.00 ANGSTROMS.                                        
REMARK   3                                                                       
REMARK   3 REFINEMENT.                                                           
REMARK   3   PROGRAM     : REFMAC 5.2.0019                                       
REMARK   3   AUTHORS     : MURSHUDOV,VAGIN,DODSON                                
REMARK   3                                                                       
REMARK   3    REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES                 
REMARK   3                                                                       
REMARK   3  DATA USED IN REFINEMENT.                                             
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00                            
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 41.96                           
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                           
REMARK   3   COMPLETENESS FOR RANGE        (%) : 98.8                            
REMARK   3   NUMBER OF REFLECTIONS             : 17275                           
REMARK   3                                                                       
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                      
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                       
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                           
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.181                            
REMARK   3   R VALUE            (WORKING SET) : 0.179                            
REMARK   3   FREE R VALUE                     : 0.226                            
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.100                            
REMARK   3   FREE R VALUE TEST SET COUNT      : 937                              
REMARK   3                                                                       
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                   
REMARK   3   TOTAL NUMBER OF BINS USED           : 20                            
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 2.00                          
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.05                          
REMARK   3   REFLECTION IN BIN     (WORKING SET) : 1128                          
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 92.26                         
REMARK   3   BIN R VALUE           (WORKING SET) : 0.2170                        
REMARK   3   BIN FREE R VALUE SET COUNT          : 76                            
REMARK   3   BIN FREE R VALUE                    : 0.2610                        
REMARK   3                                                                       
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                     
REMARK   3   PROTEIN ATOMS            : 1920                                     
REMARK   3   NUCLEIC ACID ATOMS       : 0                                        
REMARK   3   HETEROGEN ATOMS          : 1                                        
REMARK   3   SOLVENT ATOMS            : 203                                      
REMARK   3                                                                       
REMARK   3  B VALUES.                                                            
REMARK   3   B VALUE TYPE : LIKELY RESIDUAL                                      
REMARK   3   FROM WILSON PLOT           (A**2) : 28.45                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 30.77                           
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                        
REMARK   3    B11 (A**2) : -0.63000                                              
REMARK   3    B22 (A**2) : -0.72000                                              
REMARK   3    B33 (A**2) : 1.35000                                               
REMARK   3    B12 (A**2) : 0.00000                                               
REMARK   3    B13 (A**2) : 0.00000                                               
REMARK   3    B23 (A**2) : 0.00000                                               
REMARK   3                                                                       
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.                                  
REMARK   3   ESU BASED ON R VALUE                            (A): 0.181          
REMARK   3   ESU BASED ON FREE R VALUE                       (A): 0.163          
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): 0.117          
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.004          
REMARK   3                                                                       
REMARK   3 CORRELATION COEFFICIENTS.                                             
REMARK   3   CORRELATION COEFFICIENT FO-FC      : 0.960                          
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : 0.935                          
REMARK   3                                                                       
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT       
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  1979 ; 0.015 ; 0.022        
REMARK   3   BOND LENGTHS OTHERS               (A):  NULL ;  NULL ;  NULL        
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES):  2661 ; 1.641 ; 1.947        
REMARK   3   BOND ANGLES OTHERS          (DEGREES):  NULL ;  NULL ;  NULL        
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):   237 ; 9.325 ; 5.000        
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):   104 ;34.487 ;24.327        
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):   372 ;15.228 ;15.000        
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):    14 ;22.270 ;15.000        
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):   279 ; 0.120 ; 0.200        
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  1506 ; 0.007 ; 0.020        
REMARK   3   GENERAL PLANES OTHERS             (A):  NULL ;  NULL ;  NULL        
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):   769 ; 0.213 ; 0.200        
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):  NULL ;  NULL ;  NULL        
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  1302 ; 0.306 ; 0.200        
REMARK   3   NON-BONDED TORSION OTHERS         (A):  NULL ;  NULL ;  NULL        
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):   175 ; 0.168 ; 0.200        
REMARK   3   H-BOND (X...Y) OTHERS             (A):  NULL ;  NULL ;  NULL        
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):     1 ; 0.028 ; 0.200        
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL        
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):    33 ; 0.254 ; 0.200        
REMARK   3   SYMMETRY VDW OTHERS               (A):  NULL ;  NULL ;  NULL        
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):     9 ; 0.189 ; 0.200        
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL        
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL        
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL        
REMARK   3                                                                       
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT       
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2):  1219 ; 1.002 ; 1.500        
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL        
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  1887 ; 1.546 ; 2.000        
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):   876 ; 2.501 ; 3.000        
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):   774 ; 3.812 ; 4.500        
REMARK   3                                                                       
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT        
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  NULL ;  NULL ;  NULL        
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):  NULL ;  NULL ;  NULL        
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  NULL ;  NULL ;  NULL        
REMARK   3                                                                       
REMARK   3  NCS RESTRAINTS STATISTICS                                            
REMARK   3   NUMBER OF DIFFERENT NCS GROUPS : NULL                               
REMARK   3                                                                       
REMARK   3  TLS DETAILS                                                          
REMARK   3   NUMBER OF TLS GROUPS  : 1                                           
REMARK   3                                                                       
REMARK   3   TLS GROUP : 1                                                       
REMARK   3    NUMBER OF COMPONENTS GROUP : 5                                     
REMARK   3    COMPONENTS        C SSSEQI   TO  C SSSEQI                          
REMARK   3    RESIDUE RANGE :   A    -1        A    50                           
REMARK   3    RESIDUE RANGE :   A    51        A   100                           
REMARK   3    RESIDUE RANGE :   A   101        A   150                           
REMARK   3    RESIDUE RANGE :   A   151        A   200                           
REMARK   3    RESIDUE RANGE :   A   201        A   234                           
REMARK   3    ORIGIN FOR THE GROUP (A):  12.3809  18.4107   9.9460               
REMARK   3    T TENSOR                                                           
REMARK   3      T11:  -0.0660 T22:  -0.0817                                      
REMARK   3      T33:  -0.1090 T12:   0.0214                                      
REMARK   3      T13:   0.0207 T23:   0.0107                                      
REMARK   3    L TENSOR                                                           
REMARK   3      L11:   2.7984 L22:   1.6796                                      
REMARK   3      L33:   0.5194 L12:   0.3608                                      
REMARK   3      L13:  -0.0915 L23:  -0.1237                                      
REMARK   3    S TENSOR                                                           
REMARK   3      S11:  -0.0438 S12:   0.0372 S13:   0.0547                        
REMARK   3      S21:  -0.0473 S22:   0.0365 S23:   0.0776                        
REMARK   3      S31:  -0.0033 S32:   0.0060 S33:   0.0073                        
REMARK   3                                                                       
REMARK   3  BULK SOLVENT MODELLING.                                              
REMARK   3   METHOD USED : MASK                                                  
REMARK   3   PARAMETERS FOR MASK CALCULATION                                     
REMARK   3   VDW PROBE RADIUS   : 1.20                                           
REMARK   3   ION PROBE RADIUS   : 0.80                                           
REMARK   3   SHRINKAGE RADIUS   : 0.80                                           
REMARK   3                                                                       
REMARK   3  OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING    
REMARK   3  POSITIONS                                                            
REMARK   4                                                                       
REMARK   4 3BK5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                          
REMARK 100                                                                       
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-DEC-07.                   
REMARK 100 THE RCSB ID CODE IS RCSB045619.                                       
REMARK 200                                                                       
REMARK 200 EXPERIMENTAL DETAILS                                                  
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                   
REMARK 200  DATE OF DATA COLLECTION        : 17-JUN-07                           
REMARK 200  TEMPERATURE           (KELVIN) : 100                                 
REMARK 200  PH                             : 4.5                                 
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                   
REMARK 200                                                                       
REMARK 200  SYNCHROTRON              (Y/N) : Y                                   
REMARK 200  RADIATION SOURCE               : APS                                 
REMARK 200  BEAMLINE                       : 19-ID                               
REMARK 200  X-RAY GENERATOR MODEL          : NULL                                
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                   
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.97980                             
REMARK 200  MONOCHROMATOR                  : SI(111) CHANNEL                     
REMARK 200  OPTICS                         : MIRRORS                             
REMARK 200                                                                       
REMARK 200  DETECTOR TYPE                  : CCD                                 
REMARK 200  DETECTOR MANUFACTURER          : ADSC QUANTUM 315                    
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : HKL-3000                            
REMARK 200  DATA SCALING SOFTWARE          : HKL-3000                            
REMARK 200                                                                       
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 17574                               
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.000                               
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                              
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                                
REMARK 200                                                                       
REMARK 200 OVERALL.                                                              
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.6                                
REMARK 200  DATA REDUNDANCY                : 7.500                               
REMARK 200  R MERGE                    (I) : 0.16100                             
REMARK 200  R SYM                      (I) : NULL                                
REMARK 200   FOR THE DATA SET  : 16.8000                             
REMARK 200                                                                       
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                      
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00                      
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.07                      
REMARK 200  COMPLETENESS FOR SHELL     (%) : 97.1                                
REMARK 200  DATA REDUNDANCY IN SHELL       : 4.90                                
REMARK 200  R MERGE FOR SHELL          (I) : 0.49300                             
REMARK 200  R SYM FOR SHELL            (I) : NULL                                
REMARK 200   FOR SHELL         : 2.100                               
REMARK 200                                                                       
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                               
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD                           
REMARK 200 SOFTWARE USED: MLPHARE                                                
REMARK 200 STARTING MODEL: NULL                                                  
REMARK 200                                                                       
REMARK 200 REMARK: NULL                                                          
REMARK 280                                                                       
REMARK 280 CRYSTAL                                                               
REMARK 280 SOLVENT CONTENT, VS   (%): 47.68                                      
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35                      
REMARK 280                                                                       
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA ACETATE, 20% PEG 8000, 0.2M       
REMARK 280  MGCL2, PH 4.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K       
REMARK 290                                                                       
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                             
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2                         
REMARK 290                                                                       
REMARK 290      SYMOP   SYMMETRY                                                 
REMARK 290     NNNMMM   OPERATOR                                                 
REMARK 290       1555   X,Y,Z                                                    
REMARK 290       2555   -X,-Y,Z                                                  
REMARK 290       3555   -X+1/2,Y+1/2,-Z                                          
REMARK 290       4555   X+1/2,-Y+1/2,-Z                                          
REMARK 290                                                                       
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                      
REMARK 290           MMM -> TRANSLATION VECTOR                                   
REMARK 290                                                                       
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                             
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM              
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                 
REMARK 290 RELATED MOLECULES.                                                    
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000             
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000             
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000             
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000             
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000             
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000        0.00000             
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000       24.07850             
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       64.43700             
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000        0.00000             
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000       24.07850             
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000       64.43700             
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000             
REMARK 290                                                                       
REMARK 290 REMARK: NULL                                                          
REMARK 300                                                                       
REMARK 300 BIOMOLECULE: 1                                                        
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                 
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                   
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON                
REMARK 300 BURIED SURFACE AREA.                                                  
REMARK 350                                                                       
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN            
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                 
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS           
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                           
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                                
REMARK 350                                                                       
REMARK 350 BIOMOLECULE: 1                                                        
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                          
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC                   
REMARK 350 SOFTWARE USED: PISA                                                   
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                      
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000             
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000             
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000             
REMARK 375                                                                       
REMARK 375 SPECIAL POSITION                                                      
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS             
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL           
REMARK 375 POSITIONS.                                                            
REMARK 375                                                                       
REMARK 375 ATOM RES CSSEQI                                                       
REMARK 375      HOH A 373  LIES ON A SPECIAL POSITION.                           
REMARK 465                                                                       
REMARK 465 MISSING RESIDUES                                                      
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                        
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN                
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                 
REMARK 465                                                                       
REMARK 465   M RES C SSSEQI                                                      
REMARK 465     SER A    -2                                                       
REMARK 465     GLY A    33                                                       
REMARK 500                                                                       
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                          
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS                                       
REMARK 500                                                                       
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES               
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE                
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN                
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                  
REMARK 500                                                                       
REMARK 500 STANDARD TABLE:                                                       
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)                
REMARK 500                                                                       
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                         
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                      
REMARK 500                                                                       
REMARK 500  M RES CSSEQI ATM1   RES CSSEQI ATM2   DEVIATION                      
REMARK 500    ALA A  31   C     GLN A  32   N       0.178                        
REMARK 500                                                                       
REMARK 500 REMARK: NULL                                                          
REMARK 500                                                                       
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                          
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                        
REMARK 500                                                                       
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES               
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE                
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN                
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                  
REMARK 500                                                                       
REMARK 500 STANDARD TABLE:                                                       
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)               
REMARK 500                                                                       
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                         
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                      
REMARK 500                                                                       
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                      
REMARK 500    ALA A  31   O   -  C   -  N   ANGL. DEV. = -12.1 DEGREES           
REMARK 500    ARG A  93   NE  -  CZ  -  NH2 ANGL. DEV. =  -3.3 DEGREES           
REMARK 500                                                                       
REMARK 500 REMARK: NULL                                                          
REMARK 500                                                                       
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                          
REMARK 500 SUBTOPIC: TORSION ANGLES                                              
REMARK 500                                                                       
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:             
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;                
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                              
REMARK 500                                                                       
REMARK 500 STANDARD TABLE:                                                       
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                     
REMARK 500                                                                       
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-            
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400             
REMARK 500                                                                       
REMARK 500  M RES CSSEQI        PSI       PHI                                    
REMARK 500    ALA A  31     -155.91   -149.77                                    
REMARK 500    MSE A 104       60.24     34.14                                    
REMARK 500    ASP A 190       10.63     57.65                                    
REMARK 500    LYS A 191      -54.70   -131.40                                    
REMARK 500                                                                       
REMARK 500 REMARK: NULL                                                          
REMARK 500                                                                       
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                          
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS                                          
REMARK 500                                                                       
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH           
REMARK 500 CIS AND TRANS CONFORMATION.  CIS BONDS, IF ANY, ARE LISTED            
REMARK 500 ON CISPEP RECORDS.  TRANS IS DEFINED AS 180 +/- 30 AND                
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.                                   
REMARK 500                                 MODEL     OMEGA                       
REMARK 500 THR A  205     GLY A  206                  -47.79                     
REMARK 500                                                                       
REMARK 500 REMARK: NULL                                                          
REMARK 500                                                                       
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                          
REMARK 500 SUBTOPIC: CHIRAL CENTERS                                              
REMARK 500                                                                       
REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL                      
REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY                       
REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR                         
REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE                                     
REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN                             
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE                    
REMARK 500                                                                       
REMARK 500 STANDARD TABLE:                                                       
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16)        
REMARK 500                                                                       
REMARK 500  M RES CSSEQI    IMPROPER   EXPECTED   FOUND DETAILS                  
REMARK 500    THR A 205        21.4      L          L   OUTSIDE RANGE            
REMARK 500                                                                       
REMARK 500 REMARK: NULL                                                          
REMARK 620                                                                       
REMARK 620 METAL COORDINATION                                                    
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;                
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                              
REMARK 620                                                                       
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                          
REMARK 620                              MG A 235  MG                             
REMARK 620 N RES CSSEQI ATOM                                                     
REMARK 620 1 HIS A 125   NE2                                                     
REMARK 620 2 ASP A 128   OD1 105.7                                               
REMARK 620 N                    1                                                
REMARK 800                                                                       
REMARK 800 SITE                                                                  
REMARK 800 SITE_IDENTIFIER: AC1                                                  
REMARK 800 EVIDENCE_CODE: SOFTWARE                                               
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 235                   
REMARK 900                                                                       
REMARK 900 RELATED ENTRIES                                                       
REMARK 900 RELATED ID: APC87289.2   RELATED DB: TARGETDB                         
DBREF  3BK5 A    1   234  UNP    Q87Q63   Q87Q63_VIBPA    28    261              
SEQADV 3BK5 SER A   -2  UNP  Q87Q63              EXPRESSION TAG                  
SEQADV 3BK5 ASN A   -1  UNP  Q87Q63              EXPRESSION TAG                  
SEQADV 3BK5 ALA A    0  UNP  Q87Q63              EXPRESSION TAG                  
SEQRES   1 A  237  SER ASN ALA GLU LYS GLY LEU GLU ILE ALA GLN GLU ARG           
SEQRES   2 A  237  LYS ALA ARG ASP GLU GLY TRP GLY ASP SER ILE ALA THR           
SEQRES   3 A  237  MSE GLU MSE ILE LEU LYS ASN ALA GLN GLY GLU SER SER           
SEQRES   4 A  237  THR ARG LEU MSE ARG LEU LYS SER LEU GLU VAL GLU GLY           
SEQRES   5 A  237  ASP GLY ASP LYS GLY LEU THR ILE PHE ASP GLN PRO ARG           
SEQRES   6 A  237  ASP VAL THR GLY THR ALA PHE LEU ASN HIS SER HIS THR           
SEQRES   7 A  237  ILE GLY ALA ASP ASP GLN TRP LEU TYR LEU PRO ALA LEU           
SEQRES   8 A  237  LYS ARG VAL LYS ARG ILE SER SER ARG ASN LYS SER GLY           
SEQRES   9 A  237  PRO PHE MSE GLY SER GLU PHE ALA TYR GLU ASP LEU SER           
SEQRES  10 A  237  SER PHE GLU ILE GLU LYS TYR ARG PHE ASN HIS LEU LYS           
SEQRES  11 A  237  ASP GLU LYS PHE ASN GLY GLN ASP VAL PHE VAL LEU GLU           
SEQRES  12 A  237  GLN ILE PRO THR ASP LYS ASN SER GLY TYR THR LYS GLN           
SEQRES  13 A  237  VAL VAL TRP LEU ASP LYS ALA HIS TYR ARG PRO LEU LYS           
SEQRES  14 A  237  VAL GLU PHE TYR ASP ARG LYS GLY ALA LEU LEU LYS THR           
SEQRES  15 A  237  LEU THR PHE ALA ASN TYR LYS GLN TYR LEU ASP LYS TYR           
SEQRES  16 A  237  TRP ARG ALA HIS THR MSE ALA MSE THR ASN HIS GLN THR           
SEQRES  17 A  237  GLY LYS SER THR GLU LEU ASN THR SER ASP LEU ARG PHE           
SEQRES  18 A  237  GLN THR GLY LEU GLU GLU ASN ASP PHE ASN LYS ASN VAL           
SEQRES  19 A  237  LEU LYS ARG                                                   
MODRES 3BK5 MSE A   24  MET  SELENOMETHIONINE                                    
MODRES 3BK5 MSE A   26  MET  SELENOMETHIONINE                                    
MODRES 3BK5 MSE A   40  MET  SELENOMETHIONINE                                    
MODRES 3BK5 MSE A  104  MET  SELENOMETHIONINE                                    
MODRES 3BK5 MSE A  198  MET  SELENOMETHIONINE                                    
MODRES 3BK5 MSE A  200  MET  SELENOMETHIONINE                                    
HET    MSE  A  24       8                                                        
HET    MSE  A  26       8                                                        
HET    MSE  A  40       8                                                        
HET    MSE  A 104      16                                                        
HET    MSE  A 198       8                                                        
HET    MSE  A 200       8                                                        
HET     MG  A 235       1                                                        
HETNAM     MSE SELENOMETHIONINE                                                  
HETNAM      MG MAGNESIUM ION                                                     
FORMUL   1  MSE    6(C5 H11 N O2 SE)                                             
FORMUL   2   MG    MG 2+                                                         
FORMUL   3  HOH   *203(H2 O)                                                     
HELIX    1   1 ASN A   -1  ARG A   13  1                                  15     
HELIX    2   2 SER A   95  LYS A   99  5                                   5     
HELIX    3   3 ALA A  109  SER A  114  5                                   6     
HELIX    4   4 GLU A  117  GLU A  119  5                                   3     
HELIX    5   5 GLU A  223  LEU A  232  5                                  10     
SHEET    1   A13 ARG A  90  ARG A  93  0                                         
SHEET    2   A13 ASP A  80  LEU A  85 -1  N  LEU A  83   O  LYS A  92            
SHEET    3   A13 ALA A  68  HIS A  72 -1  N  ALA A  68   O  TYR A  84            
SHEET    4   A13 LYS A  53  GLN A  60 -1  N  THR A  56   O  PHE A  69            
SHEET    5   A13 SER A  36  LEU A  45 -1  N  LEU A  39   O  ASP A  59            
SHEET    6   A13 ASP A  19  LYS A  29 -1  N  LEU A  28   O  SER A  36            
SHEET    7   A13 SER A 208  PHE A 218 -1  O  SER A 208   N  LYS A  29            
SHEET    8   A13 TYR A 192  ASN A 202 -1  N  MSE A 198   O  LEU A 211            
SHEET    9   A13 LEU A 176  TYR A 188 -1  N  TYR A 188   O  TYR A 192            
SHEET   10   A13 PRO A 164  ASP A 171 -1  N  PHE A 169   O  LEU A 177            
SHEET   11   A13 TYR A 150  ASP A 158 -1  N  TRP A 156   O  LEU A 165            
SHEET   12   A13 GLN A 134  PRO A 143 -1  N  PHE A 137   O  LEU A 157            
SHEET   13   A13 TYR A 121  PHE A 131 -1  N  GLU A 129   O  VAL A 136            
LINK         NE2 HIS A 125                MG    MG A 235     1555   1555  2.00   
LINK         OD1 ASP A 128                MG    MG A 235     1555   1555  2.40   
LINK         C   THR A  23                 N   MSE A  24     1555   1555  1.33   
LINK         C   MSE A  24                 N   GLU A  25     1555   1555  1.31   
LINK         C   GLU A  25                 N   MSE A  26     1555   1555  1.33   
LINK         C   MSE A  26                 N   ILE A  27     1555   1555  1.33   
LINK         C   LEU A  39                 N   MSE A  40     1555   1555  1.33   
LINK         C   MSE A  40                 N   ARG A  41     1555   1555  1.32   
LINK         C   PHE A 103                 N  AMSE A 104     1555   1555  1.33   
LINK         C   PHE A 103                 N  BMSE A 104     1555   1555  1.34   
LINK         C  AMSE A 104                 N   GLY A 105     1555   1555  1.32   
LINK         C  BMSE A 104                 N   GLY A 105     1555   1555  1.34   
LINK         C   THR A 197                 N   MSE A 198     1555   1555  1.32   
LINK         C   MSE A 198                 N   ALA A 199     1555   1555  1.34   
LINK         C   ALA A 199                 N   MSE A 200     1555   1555  1.34   
LINK         C   MSE A 200                 N   THR A 201     1555   1555  1.33   
CISPEP   1 GLN A   60    PRO A   61          0        -7.12                      
SITE     1 AC1  4 LYS A   2  HIS A 125  LYS A 127  ASP A 128                     
CRYST1   48.157  128.874   41.968  90.00  90.00  90.00 P 21 21 2     4           
ORIGX1      1.000000  0.000000  0.000000        0.00000                          
ORIGX2      0.000000  1.000000  0.000000        0.00000                          
ORIGX3      0.000000  0.000000  1.000000        0.00000                          
SCALE1      0.020765  0.000000  0.000000        0.00000                          
SCALE2      0.000000  0.007760  0.000000        0.00000                          
SCALE3      0.000000  0.000000  0.023828        0.00000                          
END