LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_102.5wLII_11068_84
Total number of 3D structures: 74
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1ynd_A
164
177
154
1.10
18.83
84.074
12.810
T P
2z6w_A
164
177
154
1.13
20.13
83.760
12.473
T P
2alf_A
164
177
154
1.16
18.83
83.750
12.218
T P
2bit_X
164
177
154
1.18
20.13
83.584
12.002
T P
2cfe_A
162
177
153
1.17
20.26
83.249
12.016
T P
1qnh_B
170
177
153
1.16
18.95
83.244
12.104
T P
1zcx_A
164
177
154
1.23
16.88
83.140
11.571
T P
2r99_A
164
177
154
1.23
16.88
83.140
11.571
T P
1awq_A
164
177
154
1.22
18.83
83.118
11.671
T P
2hqj_A
179
177
154
1.24
16.23
83.043
11.452
T P
2igv_A
172
177
153
1.19
18.95
83.036
11.889
T P
2cmt_A
164
177
153
1.19
18.95
82.991
11.892
T P
1cyn_A
178
177
152
1.21
23.03
82.984
11.643
T P
1m9e_A
164
177
153
1.19
18.95
82.967
11.865
T P
1aws_A
164
177
154
1.24
18.18
82.957
11.492
T P
1vdn_A
161
177
153
1.20
17.65
82.910
11.788
T P
2esl_A
181
177
152
1.33
21.71
82.870
10.637
T P
2rmc_A
182
177
152
1.24
21.71
82.870
11.340
T P
1qng_A
170
177
153
1.22
19.61
82.632
11.590
T P
1zmf_A
162
177
153
1.25
16.99
82.488
11.373
T P
1ihg_A
364
177
152
1.22
19.08
82.186
11.509
T P
2gw2_A
173
177
152
1.36
15.79
81.856
10.395
T P
1mzw_A
173
177
151
1.34
17.88
81.728
10.481
T P
1z81_A
186
177
151
1.33
18.54
81.586
10.596
T P
1a58_A
177
177
152
1.41
18.42
81.353
10.092
T P
2he9_A
172
177
152
1.38
16.45
81.306
10.287
T P
1xo7_A
166
177
150
1.26
20.00
81.284
11.048
T P
1h0p_A
182
177
149
1.24
18.79
81.257
11.110
T P
2poy_B
172
177
150
1.23
19.33
81.180
11.246
T P
2haq_A
166
177
150
1.29
19.33
81.029
10.794
T P
3bt8_A
166
177
150
1.30
19.33
80.801
10.703
T P
1zkc_A
187
177
146
1.52
15.75
78.048
9.002
T P
2ok3_A
160
177
147
1.60
15.65
77.416
8.633
T P
2oju_B
166
177
145
1.48
16.55
77.079
9.184
T P
2poe_A
162
177
145
1.47
16.55
76.742
9.235
T P
2hq6_A
170
177
145
1.61
17.24
76.452
8.493
T P
2a2n_C
165
177
143
1.56
15.38
75.280
8.606
T P
2fu0_A
155
177
143
1.52
16.78
75.183
8.828
T P
1xwn_A
166
177
140
1.94
14.29
66.049
6.872
T P
2c3b_A
141
177
97
1.84
11.34
50.651
4.999
T P
1nm8_A
591
177
53
2.68
7.55
19.800
1.910
T P
2v2b_A
272
177
50
2.64
8.00
18.999
1.824
T P
1gt7_A
274
177
46
2.52
2.17
18.526
1.758
T P
2v9n_A
274
177
50
2.78
6.00
18.335
1.738
T P
1dzz_P
208
177
41
2.38
14.63
16.538
1.656
T P
2v9l_A
274
177
42
2.65
4.76
16.433
1.528
T P
1ojr_A
274
177
42
2.54
4.76
16.404
1.590
T P
2zco_A
284
177
44
2.89
4.55
16.379
1.472
T P
2opi_B
209
177
42
2.76
7.14
16.164
1.466
T P
2v9g_B
274
177
41
2.53
9.76
16.152
1.559
T P
1e48_P
206
177
40
2.50
10.00
16.081
1.541
T P
1fua_A
206
177
39
2.47
7.69
15.967
1.519
T P
1e4c_P
206
177
39
2.31
10.26
15.688
1.616
T P
1e49_P
206
177
38
2.35
5.26
15.425
1.549
T P
2v9e_A
274
177
38
2.81
7.89
15.336
1.307
T P
1ezf_B
324
177
40
2.64
2.50
15.314
1.458
T P
2z7b_A
237
177
38
2.49
2.63
15.056
1.468
T P
1e4b_P
206
177
37
2.37
2.70
14.997
1.499
T P
1e4a_P
205
177
35
2.32
5.71
14.954
1.445
T P
1e47_P
206
177
37
2.28
5.41
14.864
1.557
T P
1dzu_P
209
177
37
2.38
5.41
14.817
1.494
T P
1dzx_P
208
177
36
2.41
5.56
14.784
1.437
T P
1jdi_A
223
177
42
2.91
2.38
14.733
1.397
T P
1dzv_P
206
177
35
2.16
5.71
14.636
1.546
T P
1e46_P
206
177
34
2.42
2.94
13.818
1.348
T P
1pvt_A
232
177
33
2.50
0.00
13.460
1.269
T P
1k0w_A
223
177
31
2.82
6.45
13.160
1.062
T P
2v2a_A
274
177
35
2.82
8.57
12.897
1.197
T P
2v9m_A
274
177
34
2.63
2.94
12.854
1.245
T P
2v9i_A
272
177
32
2.36
3.12
12.790
1.302
T P
2v29_A
274
177
34
2.79
5.88
12.147
1.175
T P
2fk5_A
195
177
31
2.69
12.90
11.879
1.110
T P
2irp_A
206
177
20
2.42
10.00
8.990
0.793
T P
1dzw_P
206
177
22
2.78
0.00
8.893
0.765
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]