LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_107.5wLII_11068_90
Total number of 3D structures: 34
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
2zuo_A
812
112
82
2.30
3.66
59.425
3.414
T P
1ei3_C
397
112
66
2.06
7.58
51.692
3.052
T P
1m1j_C
390
112
63
1.93
6.35
50.392
3.108
T P
1f5n_A
570
112
69
2.32
1.45
48.554
2.856
T P
1y1u_A
544
112
71
2.41
7.04
47.792
2.826
T P
1gk4_A
79
112
56
1.78
5.36
46.773
2.986
T P
3cwg_B
507
112
64
2.42
14.06
46.387
2.541
T P
1c1g_A
284
112
71
2.50
5.63
45.908
2.727
T P
2h94_A
647
112
57
2.04
5.26
45.655
2.662
T P
2rd0_B
139
112
57
2.18
1.75
45.083
2.501
T P
1cii_A
602
112
61
2.56
9.84
44.583
2.291
T P
1jch_A
468
112
61
2.24
3.28
44.528
2.605
T P
1bg1_A
559
112
61
2.21
13.11
44.243
2.635
T P
2ve7_B
303
112
60
2.26
6.67
44.156
2.541
T P
2b5u_A
470
112
61
2.24
3.28
43.846
2.602
T P
2fxm_A
126
112
65
2.60
15.38
43.219
2.404
T P
2v1d_A
666
112
56
2.11
14.29
43.017
2.536
T P
2v71_A
160
112
58
2.49
8.62
41.057
2.242
T P
2b9c_B
142
112
61
2.52
9.84
39.879
2.329
T P
2iw5_A
666
112
55
2.13
5.45
39.790
2.470
T P
1qvr_A
803
112
51
2.07
7.84
39.661
2.353
T P
2fxo_A
129
112
62
2.63
8.06
39.429
2.273
T P
2efr_A
155
112
59
2.45
8.47
39.397
2.315
T P
1wle_B
469
112
51
2.11
7.84
39.064
2.303
T P
2hko_A
647
112
52
2.33
7.69
37.414
2.137
T P
2z3y_A
643
112
52
2.20
9.62
37.230
2.263
T P
2dw4_A
634
112
47
2.13
2.13
36.759
2.106
T P
2qzv_A
749
112
52
2.34
5.77
35.478
2.132
T P
1lrz_A
400
112
44
2.14
9.09
32.755
1.965
T P
1pix_A
586
112
46
2.16
10.87
31.940
2.037
T P
1ha0_A
494
112
44
2.37
4.55
30.758
1.781
T P
2wb7_A
525
112
45
2.47
6.67
28.832
1.750
T P
1d9x_A
590
112
36
2.20
11.11
27.100
1.568
T P
1vyh_C
310
112
21
2.71
4.76
12.728
0.747
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]