LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_112.5wLII_11068_117
Total number of 3D structures: 112
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1zoy_B
239
228
192
1.67
18.75
77.924
10.870
T P
2h88_B
239
228
193
1.66
17.10
77.859
10.965
T P
1nek_B
238
228
186
1.74
16.67
74.613
10.134
T P
1kf6_B
243
228
182
2.08
13.19
64.976
8.366
T P
2bs3_B
239
228
178
2.05
15.17
62.407
8.267
T P
2bs2_B
239
228
177
2.06
15.25
62.291
8.205
T P
3c8y_A
574
228
67
2.41
13.43
20.093
2.672
T P
1n62_A
161
228
70
2.66
7.14
19.813
2.534
T P
3cf4_A
766
228
66
2.57
7.58
19.278
2.473
T P
1i7h_A
109
228
63
2.30
15.87
19.023
2.621
T P
1uwm_A
106
228
61
2.17
19.67
18.466
2.690
T P
1qof_A
98
228
62
2.40
14.52
18.025
2.480
T P
1dgj_A
906
228
63
2.53
6.35
17.972
2.396
T P
1qob_A
98
228
61
2.40
13.11
17.759
2.444
T P
1rm6_C
157
228
62
2.64
4.84
17.682
2.265
T P
1qod
98
228
63
2.63
11.11
17.633
2.311
T P
1qoe
98
228
60
2.52
10.00
17.493
2.290
T P
1j7c_A
98
228
61
2.56
11.48
17.472
2.290
T P
1czp_A
98
228
61
2.62
13.11
17.394
2.244
T P
1frr_A
95
228
59
2.51
10.17
17.340
2.265
T P
1qoc
98
228
60
2.54
11.67
17.273
2.276
T P
1j7a_A
98
228
60
2.51
11.67
17.267
2.303
T P
1qog_A
98
228
60
2.62
13.33
17.051
2.203
T P
1e0z_A
128
228
62
2.71
8.06
16.890
2.205
T P
2fug_1
432
228
57
2.37
12.28
16.885
2.305
T P
2c3m_A
1231
228
61
2.69
3.28
16.825
2.189
T P
1doi_A
128
228
55
2.38
12.73
16.673
2.217
T P
1awd_A
94
228
58
2.50
10.34
16.278
2.229
T P
1j7b_A
98
228
57
2.54
10.53
16.198
2.159
T P
1rfk_B
97
228
59
2.70
10.17
16.106
2.108
T P
2v4j_B
380
228
52
2.66
5.77
15.832
1.883
T P
1t3q_A
162
228
56
2.62
7.14
15.806
2.057
T P
2nap_A
720
228
54
2.79
5.56
15.490
1.865
T P
1hlr_A
907
228
57
2.81
1.75
15.302
1.957
T P
1vlb_A
907
228
57
2.81
1.75
15.302
1.957
T P
2pia_A
321
228
53
2.67
3.77
15.189
1.917
T P
2nya_A
791
228
53
2.54
0.00
14.993
2.006
T P
1y4z_B
509
228
51
2.64
7.84
14.766
1.864
T P
1v9d_B
321
228
44
2.50
6.82
14.519
1.690
T P
1e61_C
767
228
49
2.66
8.16
14.314
1.774
T P
2v3v_A
721
228
50
2.87
4.00
14.281
1.682
T P
1h0h_A
976
228
47
2.79
8.51
14.025
1.627
T P
3bk7_A
593
228
47
2.66
2.13
13.763
1.703
T P
2vpz_A
734
228
47
2.59
8.51
13.758
1.749
T P
2ivf_A
912
228
42
2.65
9.52
13.591
1.527
T P
2fug_3
737
228
46
2.62
4.35
13.509
1.694
T P
1h0h_B
214
228
44
2.58
6.82
13.169
1.644
T P
1eu1_A
767
228
44
2.80
6.82
12.921
1.516
T P
1e08_A
371
228
42
2.53
7.14
12.775
1.598
T P
1roe_A
97
228
42
2.55
7.14
12.754
1.585
T P
1ogy_A
789
228
44
2.88
13.64
12.709
1.474
T P
1dms_A
766
228
44
2.79
11.36
12.678
1.520
T P
2c42_A
1231
228
43
2.57
11.63
12.642
1.613
T P
1cxs_A
768
228
43
2.90
6.98
12.465
1.435
T P
2ivf_B
337
228
42
2.70
4.76
12.452
1.501
T P
1jnr_B
149
228
42
2.59
7.14
12.312
1.562
T P
1q16_B
509
228
41
2.64
7.32
11.951
1.494
T P
1mc8_A
331
228
35
2.39
2.86
11.897
1.405
T P
2e7z_A
727
228
41
2.97
9.76
11.803
1.335
T P
1kqf_A
981
228
41
2.89
4.88
11.445
1.373
T P
1hfe_L
396
228
34
2.63
8.82
11.385
1.245
T P
1ti6_B
274
228
39
3.05
5.13
11.382
1.237
T P
1e18_A
779
228
42
2.91
4.76
11.197
1.396
T P
1frk_A
106
228
34
2.54
5.88
11.005
1.286
T P
2iv2_X
696
228
38
2.88
7.89
10.956
1.275
T P
1fri_A
106
228
35
2.71
5.71
10.934
1.244
T P
1b0v_A
106
228
36
2.83
5.56
10.916
1.231
T P
1frj_A
106
228
36
2.82
8.33
10.859
1.231
T P
1g3o_A
106
228
39
3.01
7.69
10.811
1.253
T P
1d3w_A
106
228
37
2.88
13.51
10.776
1.243
T P
2fd2_A
106
228
37
2.84
8.11
10.760
1.261
T P
1f5c_A
106
228
36
2.84
5.56
10.739
1.224
T P
1frh_A
106
228
37
2.88
8.11
10.723
1.241
T P
1frx_A
106
228
36
2.70
8.33
10.715
1.287
T P
7fd1_A
106
228
37
2.78
2.70
10.710
1.284
T P
1pc5_A
106
228
36
2.91
8.33
10.704
1.196
T P
2fug_9
154
228
36
2.69
5.56
10.651
1.291
T P
1frm_A
106
228
36
2.83
8.33
10.613
1.229
T P
1ftc_A
106
228
35
2.77
8.57
10.599
1.219
T P
1fdd_A
106
228
36
2.80
8.33
10.552
1.241
T P
1frl_A
106
228
36
2.87
11.11
10.542
1.212
T P
1gao_A
106
228
35
2.68
2.86
10.508
1.258
T P
1ff2_A
106
228
34
2.89
5.88
10.469
1.136
T P
4dmr_A
773
228
34
2.70
8.82
10.461
1.215
T P
1pc4_A
106
228
33
2.60
3.03
10.459
1.224
T P
1f5b_A
106
228
33
2.57
6.06
10.451
1.238
T P
1dmr_A
779
228
31
2.80
9.68
10.421
1.071
T P
2fdn_A
55
228
31
2.34
19.35
10.328
1.270
T P
1b0t_A
106
228
33
2.63
6.06
10.311
1.207
T P
1a6l_A
106
228
34
2.69
0.00
10.240
1.218
T P
1bqx_A
77
228
37
2.69
2.70
10.212
1.326
T P
2pa8_D
264
228
34
2.80
5.88
9.987
1.174
T P
2o01_C
80
228
33
2.84
6.06
9.737
1.122
T P
1jb0_C
80
228
33
2.61
0.00
9.628
1.220
T P
1kqf_B
289
228
32
2.67
12.50
9.625
1.155
T P
1dur_A
55
228
28
2.14
17.86
9.523
1.248
T P
1h98_A
77
228
36
2.88
2.78
9.478
1.209
T P
1k0t_A
80
228
34
2.80
8.82
9.194
1.172
T P
2vkr_A
103
228
29
2.43
3.45
9.114
1.148
T P
1h7x_B
1019
228
33
2.89
9.09
9.113
1.104
T P
1xer_A
102
228
32
2.64
0.00
9.077
1.169
T P
1blu_A
80
228
29
2.49
6.90
9.042
1.119
T P
1fdx
54
228
28
2.31
17.86
9.042
1.162
T P
2vpz_B
193
228
28
2.43
10.71
9.013
1.108
T P
1gte_D
1014
228
33
2.91
9.09
8.982
1.096
T P
1fca_A
55
228
29
2.40
10.34
8.965
1.159
T P
2fgo_A
81
228
28
2.19
7.14
8.921
1.222
T P
1bc6_A
77
228
25
2.50
16.00
8.888
0.961
T P
1g6b_A
106
228
27
2.62
3.70
8.161
0.993
T P
1clf_A
55
228
24
2.48
4.17
8.025
0.932
T P
1fd2_A
106
228
28
2.82
3.57
7.804
0.959
T P
2v2k_A
104
228
24
2.63
8.33
7.255
0.879
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]