LGA
Sequence Independent Analysis (LGA)
Frame of reference: Cat.Q2246_545_112.5wLII_11068_117
Total number of 3D structures: 112
LGA calculations using distance cutoff DIST: 4.0 A
Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY
Structure Deviation Summary
Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)
Structures ordered by LGA_S - score
Structure |
NS |
NT |
N(dist=4.0) |
RMSD(N) |
Seq_ID(N) |
LGA_S |
LGA_Q |
PLOTS |
1zoy_B |
239 |
228 |
192 |
1.67 |
18.75 |
77.924 |
10.870 |
T P |
2h88_B |
239 |
228 |
193 |
1.66 |
17.10 |
77.859 |
10.965 |
T P |
1nek_B |
238 |
228 |
186 |
1.74 |
16.67 |
74.613 |
10.134 |
T P |
1kf6_B |
243 |
228 |
182 |
2.08 |
13.19 |
64.976 |
8.366 |
T P |
2bs3_B |
239 |
228 |
178 |
2.05 |
15.17 |
62.407 |
8.267 |
T P |
2bs2_B |
239 |
228 |
177 |
2.06 |
15.25 |
62.291 |
8.205 |
T P |
3c8y_A |
574 |
228 |
67 |
2.41 |
13.43 |
20.093 |
2.672 |
T P |
1n62_A |
161 |
228 |
70 |
2.66 |
7.14 |
19.813 |
2.534 |
T P |
3cf4_A |
766 |
228 |
66 |
2.57 |
7.58 |
19.278 |
2.473 |
T P |
1i7h_A |
109 |
228 |
63 |
2.30 |
15.87 |
19.023 |
2.621 |
T P |
1uwm_A |
106 |
228 |
61 |
2.17 |
19.67 |
18.466 |
2.690 |
T P |
1qof_A |
98 |
228 |
62 |
2.40 |
14.52 |
18.025 |
2.480 |
T P |
1dgj_A |
906 |
228 |
63 |
2.53 |
6.35 |
17.972 |
2.396 |
T P |
1qob_A |
98 |
228 |
61 |
2.40 |
13.11 |
17.759 |
2.444 |
T P |
1rm6_C |
157 |
228 |
62 |
2.64 |
4.84 |
17.682 |
2.265 |
T P |
1qod |
98 |
228 |
63 |
2.63 |
11.11 |
17.633 |
2.311 |
T P |
1qoe |
98 |
228 |
60 |
2.52 |
10.00 |
17.493 |
2.290 |
T P |
1j7c_A |
98 |
228 |
61 |
2.56 |
11.48 |
17.472 |
2.290 |
T P |
1czp_A |
98 |
228 |
61 |
2.62 |
13.11 |
17.394 |
2.244 |
T P |
1frr_A |
95 |
228 |
59 |
2.51 |
10.17 |
17.340 |
2.265 |
T P |
1qoc |
98 |
228 |
60 |
2.54 |
11.67 |
17.273 |
2.276 |
T P |
1j7a_A |
98 |
228 |
60 |
2.51 |
11.67 |
17.267 |
2.303 |
T P |
1qog_A |
98 |
228 |
60 |
2.62 |
13.33 |
17.051 |
2.203 |
T P |
1e0z_A |
128 |
228 |
62 |
2.71 |
8.06 |
16.890 |
2.205 |
T P |
2fug_1 |
432 |
228 |
57 |
2.37 |
12.28 |
16.885 |
2.305 |
T P |
2c3m_A |
1231 |
228 |
61 |
2.69 |
3.28 |
16.825 |
2.189 |
T P |
1doi_A |
128 |
228 |
55 |
2.38 |
12.73 |
16.673 |
2.217 |
T P |
1awd_A |
94 |
228 |
58 |
2.50 |
10.34 |
16.278 |
2.229 |
T P |
1j7b_A |
98 |
228 |
57 |
2.54 |
10.53 |
16.198 |
2.159 |
T P |
1rfk_B |
97 |
228 |
59 |
2.70 |
10.17 |
16.106 |
2.108 |
T P |
2v4j_B |
380 |
228 |
52 |
2.66 |
5.77 |
15.832 |
1.883 |
T P |
1t3q_A |
162 |
228 |
56 |
2.62 |
7.14 |
15.806 |
2.057 |
T P |
2nap_A |
720 |
228 |
54 |
2.79 |
5.56 |
15.490 |
1.865 |
T P |
1hlr_A |
907 |
228 |
57 |
2.81 |
1.75 |
15.302 |
1.957 |
T P |
1vlb_A |
907 |
228 |
57 |
2.81 |
1.75 |
15.302 |
1.957 |
T P |
2pia_A |
321 |
228 |
53 |
2.67 |
3.77 |
15.189 |
1.917 |
T P |
2nya_A |
791 |
228 |
53 |
2.54 |
0.00 |
14.993 |
2.006 |
T P |
1y4z_B |
509 |
228 |
51 |
2.64 |
7.84 |
14.766 |
1.864 |
T P |
1v9d_B |
321 |
228 |
44 |
2.50 |
6.82 |
14.519 |
1.690 |
T P |
1e61_C |
767 |
228 |
49 |
2.66 |
8.16 |
14.314 |
1.774 |
T P |
2v3v_A |
721 |
228 |
50 |
2.87 |
4.00 |
14.281 |
1.682 |
T P |
1h0h_A |
976 |
228 |
47 |
2.79 |
8.51 |
14.025 |
1.627 |
T P |
3bk7_A |
593 |
228 |
47 |
2.66 |
2.13 |
13.763 |
1.703 |
T P |
2vpz_A |
734 |
228 |
47 |
2.59 |
8.51 |
13.758 |
1.749 |
T P |
2ivf_A |
912 |
228 |
42 |
2.65 |
9.52 |
13.591 |
1.527 |
T P |
2fug_3 |
737 |
228 |
46 |
2.62 |
4.35 |
13.509 |
1.694 |
T P |
1h0h_B |
214 |
228 |
44 |
2.58 |
6.82 |
13.169 |
1.644 |
T P |
1eu1_A |
767 |
228 |
44 |
2.80 |
6.82 |
12.921 |
1.516 |
T P |
1e08_A |
371 |
228 |
42 |
2.53 |
7.14 |
12.775 |
1.598 |
T P |
1roe_A |
97 |
228 |
42 |
2.55 |
7.14 |
12.754 |
1.585 |
T P |
1ogy_A |
789 |
228 |
44 |
2.88 |
13.64 |
12.709 |
1.474 |
T P |
1dms_A |
766 |
228 |
44 |
2.79 |
11.36 |
12.678 |
1.520 |
T P |
2c42_A |
1231 |
228 |
43 |
2.57 |
11.63 |
12.642 |
1.613 |
T P |
1cxs_A |
768 |
228 |
43 |
2.90 |
6.98 |
12.465 |
1.435 |
T P |
2ivf_B |
337 |
228 |
42 |
2.70 |
4.76 |
12.452 |
1.501 |
T P |
1jnr_B |
149 |
228 |
42 |
2.59 |
7.14 |
12.312 |
1.562 |
T P |
1q16_B |
509 |
228 |
41 |
2.64 |
7.32 |
11.951 |
1.494 |
T P |
1mc8_A |
331 |
228 |
35 |
2.39 |
2.86 |
11.897 |
1.405 |
T P |
2e7z_A |
727 |
228 |
41 |
2.97 |
9.76 |
11.803 |
1.335 |
T P |
1kqf_A |
981 |
228 |
41 |
2.89 |
4.88 |
11.445 |
1.373 |
T P |
1hfe_L |
396 |
228 |
34 |
2.63 |
8.82 |
11.385 |
1.245 |
T P |
1ti6_B |
274 |
228 |
39 |
3.05 |
5.13 |
11.382 |
1.237 |
T P |
1e18_A |
779 |
228 |
42 |
2.91 |
4.76 |
11.197 |
1.396 |
T P |
1frk_A |
106 |
228 |
34 |
2.54 |
5.88 |
11.005 |
1.286 |
T P |
2iv2_X |
696 |
228 |
38 |
2.88 |
7.89 |
10.956 |
1.275 |
T P |
1fri_A |
106 |
228 |
35 |
2.71 |
5.71 |
10.934 |
1.244 |
T P |
1b0v_A |
106 |
228 |
36 |
2.83 |
5.56 |
10.916 |
1.231 |
T P |
1frj_A |
106 |
228 |
36 |
2.82 |
8.33 |
10.859 |
1.231 |
T P |
1g3o_A |
106 |
228 |
39 |
3.01 |
7.69 |
10.811 |
1.253 |
T P |
1d3w_A |
106 |
228 |
37 |
2.88 |
13.51 |
10.776 |
1.243 |
T P |
2fd2_A |
106 |
228 |
37 |
2.84 |
8.11 |
10.760 |
1.261 |
T P |
1f5c_A |
106 |
228 |
36 |
2.84 |
5.56 |
10.739 |
1.224 |
T P |
1frh_A |
106 |
228 |
37 |
2.88 |
8.11 |
10.723 |
1.241 |
T P |
1frx_A |
106 |
228 |
36 |
2.70 |
8.33 |
10.715 |
1.287 |
T P |
7fd1_A |
106 |
228 |
37 |
2.78 |
2.70 |
10.710 |
1.284 |
T P |
1pc5_A |
106 |
228 |
36 |
2.91 |
8.33 |
10.704 |
1.196 |
T P |
2fug_9 |
154 |
228 |
36 |
2.69 |
5.56 |
10.651 |
1.291 |
T P |
1frm_A |
106 |
228 |
36 |
2.83 |
8.33 |
10.613 |
1.229 |
T P |
1ftc_A |
106 |
228 |
35 |
2.77 |
8.57 |
10.599 |
1.219 |
T P |
1fdd_A |
106 |
228 |
36 |
2.80 |
8.33 |
10.552 |
1.241 |
T P |
1frl_A |
106 |
228 |
36 |
2.87 |
11.11 |
10.542 |
1.212 |
T P |
1gao_A |
106 |
228 |
35 |
2.68 |
2.86 |
10.508 |
1.258 |
T P |
1ff2_A |
106 |
228 |
34 |
2.89 |
5.88 |
10.469 |
1.136 |
T P |
4dmr_A |
773 |
228 |
34 |
2.70 |
8.82 |
10.461 |
1.215 |
T P |
1pc4_A |
106 |
228 |
33 |
2.60 |
3.03 |
10.459 |
1.224 |
T P |
1f5b_A |
106 |
228 |
33 |
2.57 |
6.06 |
10.451 |
1.238 |
T P |
1dmr_A |
779 |
228 |
31 |
2.80 |
9.68 |
10.421 |
1.071 |
T P |
2fdn_A |
55 |
228 |
31 |
2.34 |
19.35 |
10.328 |
1.270 |
T P |
1b0t_A |
106 |
228 |
33 |
2.63 |
6.06 |
10.311 |
1.207 |
T P |
1a6l_A |
106 |
228 |
34 |
2.69 |
0.00 |
10.240 |
1.218 |
T P |
1bqx_A |
77 |
228 |
37 |
2.69 |
2.70 |
10.212 |
1.326 |
T P |
2pa8_D |
264 |
228 |
34 |
2.80 |
5.88 |
9.987 |
1.174 |
T P |
2o01_C |
80 |
228 |
33 |
2.84 |
6.06 |
9.737 |
1.122 |
T P |
1jb0_C |
80 |
228 |
33 |
2.61 |
0.00 |
9.628 |
1.220 |
T P |
1kqf_B |
289 |
228 |
32 |
2.67 |
12.50 |
9.625 |
1.155 |
T P |
1dur_A |
55 |
228 |
28 |
2.14 |
17.86 |
9.523 |
1.248 |
T P |
1h98_A |
77 |
228 |
36 |
2.88 |
2.78 |
9.478 |
1.209 |
T P |
1k0t_A |
80 |
228 |
34 |
2.80 |
8.82 |
9.194 |
1.172 |
T P |
2vkr_A |
103 |
228 |
29 |
2.43 |
3.45 |
9.114 |
1.148 |
T P |
1h7x_B |
1019 |
228 |
33 |
2.89 |
9.09 |
9.113 |
1.104 |
T P |
1xer_A |
102 |
228 |
32 |
2.64 |
0.00 |
9.077 |
1.169 |
T P |
1blu_A |
80 |
228 |
29 |
2.49 |
6.90 |
9.042 |
1.119 |
T P |
1fdx |
54 |
228 |
28 |
2.31 |
17.86 |
9.042 |
1.162 |
T P |
2vpz_B |
193 |
228 |
28 |
2.43 |
10.71 |
9.013 |
1.108 |
T P |
1gte_D |
1014 |
228 |
33 |
2.91 |
9.09 |
8.982 |
1.096 |
T P |
1fca_A |
55 |
228 |
29 |
2.40 |
10.34 |
8.965 |
1.159 |
T P |
2fgo_A |
81 |
228 |
28 |
2.19 |
7.14 |
8.921 |
1.222 |
T P |
1bc6_A |
77 |
228 |
25 |
2.50 |
16.00 |
8.888 |
0.961 |
T P |
1g6b_A |
106 |
228 |
27 |
2.62 |
3.70 |
8.161 |
0.993 |
T P |
1clf_A |
55 |
228 |
24 |
2.48 |
4.17 |
8.025 |
0.932 |
T P |
1fd2_A |
106 |
228 |
28 |
2.82 |
3.57 |
7.804 |
0.959 |
T P |
2v2k_A |
104 |
228 |
24 |
2.63 |
8.33 |
7.255 |
0.879 |
T P |
NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)
Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures",
Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374.
[MEDLINE]