LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_114.5wLII_11077_3
Total number of 3D structures: 79
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1j3s_A
104
112
101
0.43
19.80
89.901
18.881
T P
1fhb_A
108
112
98
1.50
18.37
81.599
6.142
T P
1co6_A
107
112
99
1.70
17.17
80.381
5.495
T P
1ytc_A
112
112
98
1.63
21.43
79.989
5.666
T P
1csw_A
108
112
98
1.67
19.39
79.930
5.535
T P
2b10_B
108
112
98
1.71
19.39
79.911
5.414
T P
1yeb_A
108
112
99
1.71
20.20
79.848
5.459
T P
1crg_A
108
112
98
1.66
19.39
79.836
5.571
T P
2bcn_B
108
112
98
1.68
19.39
79.832
5.513
T P
2b11_B
108
112
98
1.68
19.39
79.805
5.516
T P
1ycc_A
108
112
98
1.69
19.39
79.793
5.490
T P
2jqr_A
108
112
98
1.69
19.39
79.723
5.490
T P
3cx5_W
108
112
99
1.75
19.19
79.644
5.348
T P
1yea_A
112
112
98
1.67
21.43
79.601
5.521
T P
1ctz_A
108
112
98
1.68
19.39
79.597
5.493
T P
1cri_A
108
112
98
1.68
19.39
79.578
5.505
T P
1raq_A
108
112
98
1.72
19.39
79.566
5.394
T P
1chh_A
108
112
98
1.69
19.39
79.550
5.470
T P
1crh_A
108
112
98
1.67
19.39
79.531
5.531
T P
2b4z_A
104
112
99
1.78
18.18
79.472
5.264
T P
2b12_B
108
112
98
1.74
19.39
79.378
5.330
T P
2b0z_B
108
112
98
1.72
19.39
79.362
5.382
T P
1irw_A
108
112
98
1.69
19.39
79.347
5.484
T P
1irv_A
108
112
98
1.70
19.39
79.343
5.434
T P
1csu_A
108
112
97
1.66
19.59
79.284
5.519
T P
1csx_A
108
112
98
1.72
18.37
79.268
5.380
T P
1cih_A
108
112
97
1.64
19.59
79.206
5.586
T P
2ycc_A
108
112
98
1.72
19.39
79.198
5.375
T P
2jti_B
103
112
98
1.72
19.39
79.108
5.373
T P
1cie_A
108
112
97
1.65
19.59
79.096
5.548
T P
1cif_A
108
112
97
1.67
19.59
79.041
5.477
T P
1csv_A
108
112
98
1.74
19.39
79.037
5.327
T P
1cig_A
108
112
97
1.65
19.59
79.018
5.540
T P
3cxh_W
112
112
97
1.67
21.65
78.990
5.478
T P
1rap_A
108
112
98
1.69
19.39
78.975
5.461
T P
1ccr_A
111
112
98
1.76
18.37
78.936
5.257
T P
1hro_A
105
112
97
1.64
14.43
78.928
5.581
T P
1s6v_B
108
112
98
1.77
19.39
78.912
5.240
T P
1wej_F
104
112
98
1.79
18.37
78.826
5.179
T P
1chj_A
108
112
97
1.69
19.59
78.806
5.412
T P
1chi_A
108
112
97
1.69
19.59
78.693
5.407
T P
2aiu_A
104
112
98
1.84
17.35
78.650
5.057
T P
1i54_A
103
112
98
1.80
19.39
78.552
5.170
T P
1yfc_A
108
112
98
1.78
19.39
77.980
5.203
T P
1ql3_A
99
112
96
1.80
21.88
76.997
5.050
T P
3c2c_A
112
112
96
1.85
15.62
76.884
4.930
T P
1c7m_A
100
112
98
1.91
21.43
76.492
4.880
T P
1w2l_A
97
112
84
1.84
11.90
67.172
4.327
T P
1cyc_A
103
112
95
2.07
20.00
63.379
4.372
T P
3cp5_A
116
112
77
1.92
18.18
60.565
3.818
T P
2c1d_B
137
112
74
2.18
16.22
47.085
3.243
T P
2v07_A
98
112
69
1.98
17.39
46.775
3.314
T P
2ce0_A
99
112
70
2.04
18.57
46.691
3.276
T P
1ctj_A
89
112
70
2.02
17.14
46.274
3.299
T P
2d0s_A
79
112
67
2.15
8.96
46.222
2.974
T P
1f1c_A
129
112
72
2.20
22.22
45.677
3.129
T P
2v08_A
84
112
64
1.98
18.75
45.121
3.071
T P
1cyj_A
90
112
69
2.13
21.74
44.384
3.088
T P
1dt1_A
129
112
68
2.03
14.71
44.074
3.188
T P
1c6r_A
88
112
70
2.18
15.71
43.950
3.069
T P
1lms_A
95
112
73
2.41
17.81
43.888
2.903
T P
1ls9_A
91
112
68
2.17
23.53
43.734
2.990
T P
1c52_A
131
112
69
2.15
14.49
43.630
3.064
T P
2c1v_A
335
112
66
2.26
16.67
43.567
2.792
T P
1zzh_B
308
112
69
2.36
17.39
43.367
2.804
T P
2vhd_A
323
112
68
2.30
13.24
43.008
2.828
T P
2zbo_A
86
112
66
2.02
22.73
42.943
3.111
T P
2fwl_A
129
112
69
2.29
14.49
42.915
2.890
T P
1gdv_A
85
112
66
2.14
27.27
42.152
2.950
T P
1foc_A
128
112
68
2.25
14.71
42.132
2.889
T P
1nml_A
316
112
67
2.21
14.93
41.619
2.905
T P
1fcd_C
174
112
64
2.13
15.62
41.167
2.871
T P
1m70_A
190
112
65
2.34
20.00
40.723
2.667
T P
1h1o_A
172
112
65
2.29
21.54
40.593
2.725
T P
1c6s_A
87
112
61
2.23
16.39
38.247
2.623
T P
1nir_B
539
112
64
2.53
18.75
37.327
2.434
T P
2ie8_A
390
112
45
2.65
6.67
25.781
1.635
T P
1m53_A
556
112
47
2.80
2.13
25.263
1.621
T P
1v6s_A
390
112
40
2.60
2.50
24.365
1.482
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]