LGA
Sequence Independent Analysis (LGA)
Frame of reference: Cat.Q2246_545_114.5wLII_11077_3
Total number of 3D structures: 79
LGA calculations using distance cutoff DIST: 4.0 A
Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY
Structure Deviation Summary
Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)
Structures ordered by LGA_S - score
Structure |
NS |
NT |
N(dist=4.0) |
RMSD(N) |
Seq_ID(N) |
LGA_S |
LGA_Q |
PLOTS |
1j3s_A |
104 |
112 |
101 |
0.43 |
19.80 |
89.901 |
18.881 |
T P |
1fhb_A |
108 |
112 |
98 |
1.50 |
18.37 |
81.599 |
6.142 |
T P |
1co6_A |
107 |
112 |
99 |
1.70 |
17.17 |
80.381 |
5.495 |
T P |
1ytc_A |
112 |
112 |
98 |
1.63 |
21.43 |
79.989 |
5.666 |
T P |
1csw_A |
108 |
112 |
98 |
1.67 |
19.39 |
79.930 |
5.535 |
T P |
2b10_B |
108 |
112 |
98 |
1.71 |
19.39 |
79.911 |
5.414 |
T P |
1yeb_A |
108 |
112 |
99 |
1.71 |
20.20 |
79.848 |
5.459 |
T P |
1crg_A |
108 |
112 |
98 |
1.66 |
19.39 |
79.836 |
5.571 |
T P |
2bcn_B |
108 |
112 |
98 |
1.68 |
19.39 |
79.832 |
5.513 |
T P |
2b11_B |
108 |
112 |
98 |
1.68 |
19.39 |
79.805 |
5.516 |
T P |
1ycc_A |
108 |
112 |
98 |
1.69 |
19.39 |
79.793 |
5.490 |
T P |
2jqr_A |
108 |
112 |
98 |
1.69 |
19.39 |
79.723 |
5.490 |
T P |
3cx5_W |
108 |
112 |
99 |
1.75 |
19.19 |
79.644 |
5.348 |
T P |
1yea_A |
112 |
112 |
98 |
1.67 |
21.43 |
79.601 |
5.521 |
T P |
1ctz_A |
108 |
112 |
98 |
1.68 |
19.39 |
79.597 |
5.493 |
T P |
1cri_A |
108 |
112 |
98 |
1.68 |
19.39 |
79.578 |
5.505 |
T P |
1raq_A |
108 |
112 |
98 |
1.72 |
19.39 |
79.566 |
5.394 |
T P |
1chh_A |
108 |
112 |
98 |
1.69 |
19.39 |
79.550 |
5.470 |
T P |
1crh_A |
108 |
112 |
98 |
1.67 |
19.39 |
79.531 |
5.531 |
T P |
2b4z_A |
104 |
112 |
99 |
1.78 |
18.18 |
79.472 |
5.264 |
T P |
2b12_B |
108 |
112 |
98 |
1.74 |
19.39 |
79.378 |
5.330 |
T P |
2b0z_B |
108 |
112 |
98 |
1.72 |
19.39 |
79.362 |
5.382 |
T P |
1irw_A |
108 |
112 |
98 |
1.69 |
19.39 |
79.347 |
5.484 |
T P |
1irv_A |
108 |
112 |
98 |
1.70 |
19.39 |
79.343 |
5.434 |
T P |
1csu_A |
108 |
112 |
97 |
1.66 |
19.59 |
79.284 |
5.519 |
T P |
1csx_A |
108 |
112 |
98 |
1.72 |
18.37 |
79.268 |
5.380 |
T P |
1cih_A |
108 |
112 |
97 |
1.64 |
19.59 |
79.206 |
5.586 |
T P |
2ycc_A |
108 |
112 |
98 |
1.72 |
19.39 |
79.198 |
5.375 |
T P |
2jti_B |
103 |
112 |
98 |
1.72 |
19.39 |
79.108 |
5.373 |
T P |
1cie_A |
108 |
112 |
97 |
1.65 |
19.59 |
79.096 |
5.548 |
T P |
1cif_A |
108 |
112 |
97 |
1.67 |
19.59 |
79.041 |
5.477 |
T P |
1csv_A |
108 |
112 |
98 |
1.74 |
19.39 |
79.037 |
5.327 |
T P |
1cig_A |
108 |
112 |
97 |
1.65 |
19.59 |
79.018 |
5.540 |
T P |
3cxh_W |
112 |
112 |
97 |
1.67 |
21.65 |
78.990 |
5.478 |
T P |
1rap_A |
108 |
112 |
98 |
1.69 |
19.39 |
78.975 |
5.461 |
T P |
1ccr_A |
111 |
112 |
98 |
1.76 |
18.37 |
78.936 |
5.257 |
T P |
1hro_A |
105 |
112 |
97 |
1.64 |
14.43 |
78.928 |
5.581 |
T P |
1s6v_B |
108 |
112 |
98 |
1.77 |
19.39 |
78.912 |
5.240 |
T P |
1wej_F |
104 |
112 |
98 |
1.79 |
18.37 |
78.826 |
5.179 |
T P |
1chj_A |
108 |
112 |
97 |
1.69 |
19.59 |
78.806 |
5.412 |
T P |
1chi_A |
108 |
112 |
97 |
1.69 |
19.59 |
78.693 |
5.407 |
T P |
2aiu_A |
104 |
112 |
98 |
1.84 |
17.35 |
78.650 |
5.057 |
T P |
1i54_A |
103 |
112 |
98 |
1.80 |
19.39 |
78.552 |
5.170 |
T P |
1yfc_A |
108 |
112 |
98 |
1.78 |
19.39 |
77.980 |
5.203 |
T P |
1ql3_A |
99 |
112 |
96 |
1.80 |
21.88 |
76.997 |
5.050 |
T P |
3c2c_A |
112 |
112 |
96 |
1.85 |
15.62 |
76.884 |
4.930 |
T P |
1c7m_A |
100 |
112 |
98 |
1.91 |
21.43 |
76.492 |
4.880 |
T P |
1w2l_A |
97 |
112 |
84 |
1.84 |
11.90 |
67.172 |
4.327 |
T P |
1cyc_A |
103 |
112 |
95 |
2.07 |
20.00 |
63.379 |
4.372 |
T P |
3cp5_A |
116 |
112 |
77 |
1.92 |
18.18 |
60.565 |
3.818 |
T P |
2c1d_B |
137 |
112 |
74 |
2.18 |
16.22 |
47.085 |
3.243 |
T P |
2v07_A |
98 |
112 |
69 |
1.98 |
17.39 |
46.775 |
3.314 |
T P |
2ce0_A |
99 |
112 |
70 |
2.04 |
18.57 |
46.691 |
3.276 |
T P |
1ctj_A |
89 |
112 |
70 |
2.02 |
17.14 |
46.274 |
3.299 |
T P |
2d0s_A |
79 |
112 |
67 |
2.15 |
8.96 |
46.222 |
2.974 |
T P |
1f1c_A |
129 |
112 |
72 |
2.20 |
22.22 |
45.677 |
3.129 |
T P |
2v08_A |
84 |
112 |
64 |
1.98 |
18.75 |
45.121 |
3.071 |
T P |
1cyj_A |
90 |
112 |
69 |
2.13 |
21.74 |
44.384 |
3.088 |
T P |
1dt1_A |
129 |
112 |
68 |
2.03 |
14.71 |
44.074 |
3.188 |
T P |
1c6r_A |
88 |
112 |
70 |
2.18 |
15.71 |
43.950 |
3.069 |
T P |
1lms_A |
95 |
112 |
73 |
2.41 |
17.81 |
43.888 |
2.903 |
T P |
1ls9_A |
91 |
112 |
68 |
2.17 |
23.53 |
43.734 |
2.990 |
T P |
1c52_A |
131 |
112 |
69 |
2.15 |
14.49 |
43.630 |
3.064 |
T P |
2c1v_A |
335 |
112 |
66 |
2.26 |
16.67 |
43.567 |
2.792 |
T P |
1zzh_B |
308 |
112 |
69 |
2.36 |
17.39 |
43.367 |
2.804 |
T P |
2vhd_A |
323 |
112 |
68 |
2.30 |
13.24 |
43.008 |
2.828 |
T P |
2zbo_A |
86 |
112 |
66 |
2.02 |
22.73 |
42.943 |
3.111 |
T P |
2fwl_A |
129 |
112 |
69 |
2.29 |
14.49 |
42.915 |
2.890 |
T P |
1gdv_A |
85 |
112 |
66 |
2.14 |
27.27 |
42.152 |
2.950 |
T P |
1foc_A |
128 |
112 |
68 |
2.25 |
14.71 |
42.132 |
2.889 |
T P |
1nml_A |
316 |
112 |
67 |
2.21 |
14.93 |
41.619 |
2.905 |
T P |
1fcd_C |
174 |
112 |
64 |
2.13 |
15.62 |
41.167 |
2.871 |
T P |
1m70_A |
190 |
112 |
65 |
2.34 |
20.00 |
40.723 |
2.667 |
T P |
1h1o_A |
172 |
112 |
65 |
2.29 |
21.54 |
40.593 |
2.725 |
T P |
1c6s_A |
87 |
112 |
61 |
2.23 |
16.39 |
38.247 |
2.623 |
T P |
1nir_B |
539 |
112 |
64 |
2.53 |
18.75 |
37.327 |
2.434 |
T P |
2ie8_A |
390 |
112 |
45 |
2.65 |
6.67 |
25.781 |
1.635 |
T P |
1m53_A |
556 |
112 |
47 |
2.80 |
2.13 |
25.263 |
1.621 |
T P |
1v6s_A |
390 |
112 |
40 |
2.60 |
2.50 |
24.365 |
1.482 |
T P |
NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)
Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures",
Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374.
[MEDLINE]