LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_116.5wLII_11077_6
Total number of 3D structures: 96
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1ccr_A
111
79
77
1.10
25.97
94.742
6.443
T P
1ctz_A
108
79
76
0.98
19.74
94.692
7.047
T P
1cri_A
108
79
76
0.97
18.42
94.409
7.078
T P
2ycc_A
108
79
76
1.00
19.74
94.404
6.917
T P
1crh_A
108
79
76
0.99
19.74
94.326
6.963
T P
1chh_A
108
79
76
0.99
19.74
94.326
6.995
T P
1crg_A
108
79
76
0.97
19.74
94.326
7.123
T P
1csw_A
108
79
76
1.00
19.74
94.309
6.936
T P
1irw_A
108
79
76
1.00
19.74
94.309
6.911
T P
1irv_A
108
79
76
1.02
21.05
94.298
6.759
T P
1cih_A
108
79
76
1.00
18.42
94.248
6.940
T P
2b12_B
108
79
76
1.01
19.74
94.226
6.860
T P
1cie_A
108
79
76
0.99
19.74
94.226
6.947
T P
1ycc_A
108
79
76
0.99
19.74
94.226
6.956
T P
2jqr_A
108
79
76
0.99
19.74
94.226
6.956
T P
1raq_A
108
79
76
1.01
19.74
94.154
6.876
T P
1cig_A
108
79
76
0.99
18.42
94.154
6.962
T P
1csu_A
108
79
76
1.00
19.74
94.126
6.892
T P
1rap_A
108
79
76
0.98
19.74
94.126
7.033
T P
2b11_B
108
79
76
1.03
19.74
94.121
6.736
T P
2bcn_B
108
79
76
1.05
19.74
94.115
6.607
T P
1cif_A
108
79
76
1.00
19.74
94.115
6.882
T P
1csx_A
108
79
76
1.02
22.37
94.054
6.791
T P
1chi_A
108
79
76
1.02
21.05
94.054
6.789
T P
1chj_A
108
79
76
1.02
21.05
94.026
6.756
T P
1s6v_B
108
79
76
1.07
21.05
93.965
6.485
T P
2b0z_B
108
79
76
1.03
19.74
93.937
6.702
T P
1csv_A
108
79
76
1.02
19.74
93.926
6.801
T P
1ytc_A
112
79
76
1.08
18.42
93.843
6.448
T P
1yeb_A
108
79
76
1.03
21.05
93.843
6.753
T P
3cxh_W
112
79
76
1.11
18.42
93.771
6.295
T P
1yea_A
112
79
76
1.07
19.74
93.743
6.519
T P
3cx5_W
108
79
76
1.09
19.74
93.676
6.402
T P
2aiu_A
104
79
75
0.78
29.33
93.510
8.567
T P
1i54_A
103
79
75
0.79
24.00
93.415
8.425
T P
2b4z_A
104
79
75
0.84
26.67
93.316
7.945
T P
1wej_F
104
79
75
0.83
26.67
93.316
8.051
T P
2b10_B
108
79
76
1.19
19.74
92.816
5.911
T P
1hro_A
105
79
76
1.34
22.37
92.155
5.295
T P
2jti_B
103
79
75
1.09
20.00
91.411
6.314
T P
1co6_A
107
79
74
1.05
24.32
90.778
6.413
T P
1qn2_A
99
79
73
1.05
26.03
89.435
6.363
T P
1yfc_A
108
79
75
1.44
21.33
89.229
4.873
T P
1fhb_A
108
79
75
1.35
20.00
89.057
5.171
T P
1ql3_A
99
79
73
1.18
28.77
88.757
5.719
T P
1cyc_A
103
79
74
1.39
24.32
86.998
4.975
T P
1j3s_A
104
79
74
1.66
25.68
85.704
4.213
T P
3cp5_A
116
79
71
1.72
19.72
82.073
3.896
T P
1w2l_A
97
79
69
1.67
20.29
81.393
3.896
T P
1umm_A
149
79
67
2.06
14.93
75.024
3.103
T P
1hzu_A
521
79
64
1.84
12.50
73.425
3.306
T P
2c1d_B
137
79
72
1.81
22.22
73.046
3.764
T P
1b7c_A
71
79
62
1.85
22.58
71.008
3.181
T P
1e2r_B
543
79
65
1.95
13.85
66.123
3.166
T P
2d0w_A
168
79
67
2.21
17.91
65.327
2.897
T P
1kv9_A
664
79
65
1.98
20.00
64.483
3.125
T P
2d0s_A
79
79
59
1.98
15.25
64.154
2.840
T P
1gq1_A
559
79
59
1.94
13.56
62.913
2.895
T P
1hj5_A
559
79
58
1.79
13.79
62.579
3.066
T P
1qks_A
559
79
59
1.99
13.56
62.508
2.822
T P
1hzv_A
514
79
60
2.00
13.33
61.818
2.863
T P
2v08_A
84
79
63
2.03
14.29
61.560
2.964
T P
2zbo_A
86
79
63
2.04
14.29
61.353
2.950
T P
1nir_B
539
79
63
2.03
12.70
60.713
2.953
T P
2i8f_A
82
79
64
2.17
14.06
60.503
2.817
T P
2gc4_D
147
79
62
1.96
17.74
60.407
3.016
T P
1gdv_A
85
79
64
2.16
15.62
60.389
2.827
T P
1mg2_D
147
79
63
2.12
15.87
60.296
2.842
T P
1ctj_A
89
79
64
2.19
17.19
60.255
2.795
T P
1fi3_A
82
79
66
2.18
13.64
60.201
2.889
T P
1kb0_A
669
79
64
2.08
18.75
59.822
2.941
T P
1cyj_A
90
79
64
2.21
17.19
59.134
2.774
T P
1c6r_A
88
79
62
2.11
14.52
59.067
2.806
T P
2ce0_A
99
79
62
2.12
17.74
59.024
2.790
T P
2dge_A
102
79
59
1.93
18.64
58.971
2.904
T P
1kx2_A
81
79
61
2.16
16.39
58.949
2.704
T P
351c_A
82
79
62
1.98
16.13
58.810
2.975
T P
1yiq_A
684
79
63
1.98
20.63
58.396
3.028
T P
1c52_A
131
79
59
1.97
25.42
58.230
2.844
T P
1ls9_A
91
79
61
2.10
19.67
58.190
2.770
T P
2v07_A
98
79
61
2.07
16.39
58.120
2.813
T P
1cch_A
82
79
61
2.17
13.11
57.949
2.685
T P
1kib_A
89
79
62
2.23
14.52
57.938
2.664
T P
1wve_C
75
79
60
2.21
21.67
57.884
2.602
T P
1dt1_A
129
79
63
2.15
25.40
56.629
2.800
T P
1f1f_A
88
79
62
2.09
14.52
56.457
2.829
T P
1m70_A
190
79
64
2.35
14.06
55.184
2.615
T P
1cor_A
82
79
59
2.07
15.25
55.104
2.720
T P
2fwl_A
129
79
57
2.19
26.32
54.986
2.493
T P
1foc_A
128
79
62
2.28
24.19
53.414
2.604
T P
1c6s_A
87
79
57
2.12
15.79
52.381
2.563
T P
1h1o_A
172
79
60
2.39
8.33
52.034
2.406
T P
1a56_A
81
79
60
2.32
11.67
51.620
2.483
T P
2c1v_A
335
79
54
2.13
9.26
49.976
2.426
T P
1lms_A
95
79
54
2.27
18.52
48.290
2.280
T P
1gpe_A
587
79
34
2.45
2.94
32.229
1.333
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]