LGA
Sequence Independent Analysis (LGA)
Frame of reference: Cat.Q2246_545_119.5wLII_11077_10
Total number of 3D structures: 19
LGA calculations using distance cutoff DIST: 4.0 A
Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY
Structure Deviation Summary
Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)
Structures ordered by LGA_S - score
Structure |
NS |
NT |
N(dist=4.0) |
RMSD(N) |
Seq_ID(N) |
LGA_S |
LGA_Q |
PLOTS |
2aii_X |
274 |
240 |
224 |
0.84 |
33.93 |
91.968 |
23.892 |
T P |
2afy_X |
274 |
240 |
224 |
0.83 |
33.93 |
91.965 |
24.154 |
T P |
1y1j_X |
275 |
240 |
224 |
0.84 |
33.93 |
91.941 |
23.852 |
T P |
2aij_X |
274 |
240 |
224 |
0.84 |
34.38 |
91.935 |
23.776 |
T P |
1z70_X |
276 |
240 |
224 |
0.84 |
33.93 |
91.932 |
23.957 |
T P |
1y1h_X |
275 |
240 |
224 |
0.84 |
33.93 |
91.926 |
23.873 |
T P |
2q17_E |
289 |
240 |
218 |
1.17 |
35.78 |
88.916 |
17.101 |
T P |
1y4j_B |
268 |
240 |
200 |
1.39 |
39.50 |
80.080 |
13.397 |
T P |
1yu4_A |
376 |
240 |
134 |
1.48 |
18.66 |
53.379 |
8.474 |
T P |
1yu1_A |
376 |
240 |
134 |
1.52 |
17.91 |
53.282 |
8.260 |
T P |
2iou_A |
376 |
240 |
134 |
1.53 |
18.66 |
53.237 |
8.218 |
T P |
1yu2_A |
377 |
240 |
134 |
1.56 |
17.91 |
53.004 |
8.092 |
T P |
1yu3_A |
376 |
240 |
132 |
1.63 |
18.94 |
50.946 |
7.614 |
T P |
1yu0_A |
376 |
240 |
134 |
1.67 |
18.66 |
49.458 |
7.579 |
T P |
1civ_A |
374 |
240 |
51 |
2.66 |
7.84 |
14.128 |
1.848 |
T P |
7mdh_B |
360 |
240 |
53 |
2.61 |
7.55 |
14.113 |
1.958 |
T P |
2rdb_A |
491 |
240 |
47 |
2.60 |
4.26 |
13.230 |
1.742 |
T P |
2inc_A |
491 |
240 |
37 |
2.69 |
5.41 |
10.101 |
1.326 |
T P |
1t0q_A |
491 |
240 |
34 |
2.73 |
11.76 |
9.452 |
1.200 |
T P |
NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)
Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures",
Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374.
[MEDLINE]