LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_120.5wLII_11077_13
Total number of 3D structures: 67
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
2r39_A
109
106
101
0.55
17.82
94.704
15.433
T P
1ti6_B
274
106
54
2.22
5.56
37.092
2.325
T P
3c7b_A
417
106
44
2.68
4.55
29.494
1.584
T P
2vkr_A
103
106
46
2.92
10.87
26.653
1.522
T P
2c42_A
1231
106
38
2.35
7.89
26.363
1.554
T P
1b0v_A
106
106
36
2.22
2.78
26.218
1.555
T P
2fug_9
154
106
42
2.66
7.14
25.917
1.524
T P
2vpz_B
193
106
40
2.66
12.50
25.860
1.448
T P
1jnr_B
149
106
42
2.83
4.76
25.480
1.435
T P
1kqf_B
289
106
39
2.86
2.56
25.213
1.318
T P
1blu_A
80
106
39
2.64
7.69
24.884
1.425
T P
1gao_A
106
106
40
2.73
0.00
24.757
1.414
T P
1dur_A
55
106
39
2.51
2.56
24.727
1.495
T P
2fgo_A
81
106
39
2.56
2.56
24.593
1.468
T P
1f5c_A
106
106
40
2.73
12.50
24.537
1.416
T P
7fd1_A
106
106
40
2.79
2.50
24.443
1.384
T P
1bc6_A
77
106
37
2.44
0.00
24.424
1.454
T P
1d3w_A
106
106
40
2.65
10.00
24.384
1.456
T P
1jb0_C
80
106
39
2.80
7.69
24.199
1.344
T P
1frj_A
106
106
39
2.80
2.56
24.177
1.345
T P
1bqx_A
77
106
38
2.72
0.00
24.169
1.346
T P
3c7b_B
363
106
36
2.41
2.78
24.102
1.436
T P
1b0t_A
106
106
39
2.68
5.13
24.063
1.404
T P
2fdn_A
55
106
41
2.78
14.63
23.984
1.422
T P
1frh_A
106
106
39
2.79
2.56
23.888
1.349
T P
3bk7_A
593
106
40
2.64
7.50
23.880
1.458
T P
1f5b_A
106
106
38
2.58
5.26
23.844
1.419
T P
1h98_A
77
106
39
2.75
7.69
23.791
1.368
T P
1fdd_A
106
106
38
2.57
5.26
23.728
1.423
T P
2ivf_B
337
106
35
2.95
5.71
23.721
1.147
T P
1a6l_A
106
106
37
2.52
2.70
23.679
1.412
T P
1ftc_A
106
106
35
2.62
5.71
23.625
1.289
T P
1fri_A
106
106
40
2.81
10.00
23.619
1.376
T P
2fd2_A
106
106
38
2.81
0.00
23.503
1.304
T P
1frl_A
106
106
38
2.53
7.89
23.498
1.445
T P
1frm_A
106
106
38
2.53
7.89
23.472
1.446
T P
1fca_A
55
106
36
2.42
5.56
23.472
1.431
T P
1pc4_A
106
106
36
2.81
5.56
23.463
1.238
T P
1pc5_A
106
106
38
2.84
5.26
23.448
1.292
T P
1rgv_A
80
106
36
2.54
5.56
23.438
1.364
T P
1frk_A
106
106
38
2.53
7.89
23.351
1.443
T P
2v4j_A
436
106
34
2.50
5.88
23.210
1.306
T P
1ff2_A
106
106
36
2.72
5.56
23.149
1.275
T P
1hfe_L
396
106
38
3.04
5.26
23.140
1.210
T P
1fd2_A
106
106
38
2.68
10.53
23.012
1.367
T P
1g3o_A
106
106
38
2.60
10.53
22.973
1.407
T P
2c3m_A
1231
106
35
3.02
14.29
22.932
1.122
T P
1clf_A
55
106
35
2.56
2.86
22.902
1.315
T P
2v2k_A
104
106
37
2.86
5.41
22.896
1.248
T P
1frx_A
106
106
36
2.77
5.56
22.869
1.256
T P
1y4z_B
509
106
37
2.84
5.41
22.492
1.257
T P
1g6b_A
106
106
38
2.81
7.89
22.358
1.304
T P
1fdx
54
106
34
2.66
8.82
22.221
1.231
T P
3c8y_A
574
106
34
2.95
2.94
20.669
1.115
T P
2o01_C
80
106
33
2.78
3.03
20.537
1.146
T P
1k0t_A
80
106
31
2.88
6.45
20.531
1.039
T P
1yy9_A
613
106
30
2.77
6.67
19.375
1.046
T P
1xer_A
102
106
29
2.90
3.45
18.383
0.968
T P
3b2v_A
375
106
28
2.66
10.71
18.262
1.016
T P
3cf4_A
766
106
29
2.73
10.34
17.616
1.024
T P
1h7x_B
1019
106
25
2.88
4.00
17.341
0.838
T P
1e08_A
371
106
29
2.87
3.45
17.246
0.975
T P
1gte_D
1014
106
25
2.83
4.00
16.865
0.853
T P
1h0h_B
214
106
26
2.75
11.54
16.536
0.913
T P
1igr_A
471
106
27
2.83
0.00
16.367
0.921
T P
1q16_B
509
106
26
2.95
3.85
16.283
0.853
T P
1nql_A
612
106
24
2.86
0.00
14.393
0.811
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]