LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_127.5wLII_11077_37
Total number of 3D structures: 100
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
2c1v_A
335
263
237
1.09
17.72
87.487
19.905
T P
2vhd_A
323
263
235
1.23
14.89
85.591
17.700
T P
1iqc_A
308
263
228
1.32
13.60
82.108
16.026
T P
1nml_A
316
263
194
1.80
15.46
66.819
10.224
T P
1zzh_B
308
263
189
2.00
17.46
60.009
8.995
T P
1h32_A
261
263
81
2.11
9.88
22.800
3.665
T P
1w2l_A
97
263
64
1.74
20.31
20.459
3.478
T P
1h1o_A
172
263
69
2.41
17.39
19.720
2.752
T P
1yiq_A
684
263
65
1.97
13.85
19.327
3.144
T P
2dge_A
102
263
65
1.99
16.92
19.059
3.108
T P
1f1f_A
88
263
59
1.71
10.17
18.258
3.254
T P
1ql3_A
99
263
60
1.86
16.67
17.988
3.067
T P
1ctj_A
89
263
60
1.97
15.00
17.941
2.892
T P
1h32_B
134
263
59
1.84
11.86
17.941
3.045
T P
1kib_A
89
263
60
1.75
10.00
17.935
3.235
T P
2c1d_B
137
263
59
1.97
8.47
17.868
2.845
T P
2zbo_A
86
263
59
1.95
15.25
17.853
2.885
T P
1qn2_A
99
263
58
1.76
10.34
17.811
3.114
T P
2aiu_A
104
263
60
1.93
16.67
17.698
2.949
T P
1cyj_A
90
263
59
1.85
20.34
17.696
3.020
T P
1mg2_D
147
263
61
2.18
16.39
17.688
2.670
T P
1wej_F
104
263
60
2.03
16.67
17.669
2.815
T P
1ls9_A
91
263
58
1.87
20.69
17.646
2.939
T P
2gc4_D
147
263
61
2.16
16.39
17.439
2.703
T P
1j3s_A
104
263
59
1.97
13.56
17.370
2.846
T P
3cp5_A
116
263
59
1.98
13.56
17.340
2.832
T P
1co6_A
107
263
58
1.88
10.34
17.327
2.923
T P
2b10_B
108
263
57
1.90
10.53
17.272
2.847
T P
2ce0_A
99
263
61
2.00
16.39
17.244
2.910
T P
1i54_A
103
263
56
1.80
19.64
17.225
2.952
T P
1gdv_A
85
263
60
2.14
26.67
17.133
2.680
T P
1ycc_A
108
263
58
2.00
12.07
17.127
2.767
T P
2jqr_A
108
263
58
2.00
10.34
17.127
2.767
T P
1cri_A
108
263
58
1.98
12.07
17.051
2.784
T P
2v08_A
84
263
57
2.09
24.56
16.976
2.608
T P
1c6r_A
88
263
56
2.05
23.21
16.950
2.607
T P
1dt1_A
129
263
57
2.09
17.54
16.931
2.603
T P
1chh_A
108
263
55
1.82
12.73
16.838
2.869
T P
1umm_A
149
263
57
2.00
15.79
16.823
2.720
T P
2b11_B
108
263
55
1.83
12.73
16.820
2.855
T P
1raq_A
108
263
57
2.02
10.53
16.731
2.683
T P
2v07_A
98
263
60
2.11
16.67
16.726
2.714
T P
1m70_A
190
263
64
2.75
4.69
16.443
2.249
T P
2bcn_B
108
263
57
2.00
12.28
16.438
2.719
T P
2b4z_A
104
263
57
1.96
14.04
16.309
2.765
T P
1yeb_A
108
263
59
2.06
10.17
16.304
2.726
T P
2fwl_A
129
263
58
2.10
15.52
16.261
2.639
T P
1ctz_A
108
263
58
2.09
12.07
16.187
2.646
T P
1c52_A
131
263
56
2.08
17.86
16.180
2.564
T P
1c7m_A
100
263
56
1.91
14.29
16.131
2.784
T P
1c6s_A
87
263
58
1.99
20.69
16.093
2.769
T P
1ccr_A
111
263
58
2.18
10.34
15.945
2.548
T P
1foc_A
128
263
57
2.14
17.54
15.924
2.543
T P
1fhb_A
108
263
58
2.13
8.62
15.889
2.602
T P
1cyc_A
103
263
59
2.11
18.64
15.838
2.670
T P
1csu_A
108
263
56
2.14
7.14
15.821
2.500
T P
351c_A
82
263
52
1.92
26.92
15.785
2.570
T P
3cxh_W
112
263
56
1.94
8.93
15.769
2.744
T P
1yea_A
112
263
55
1.90
9.09
15.735
2.756
T P
1cor_A
82
263
54
2.17
27.78
15.707
2.380
T P
1irv_A
108
263
58
2.22
5.17
15.699
2.497
T P
1crg_A
108
263
57
2.19
7.02
15.681
2.493
T P
1cif_A
108
263
57
2.18
8.77
15.636
2.495
T P
2jti_B
103
263
58
2.31
5.17
15.610
2.405
T P
1s6v_B
108
263
55
2.11
14.55
15.610
2.490
T P
2b0z_B
108
263
58
2.33
6.90
15.596
2.386
T P
1csv_A
108
263
57
2.20
7.02
15.474
2.483
T P
1chi_A
108
263
56
2.17
5.36
15.428
2.467
T P
1fi3_A
82
263
52
1.88
26.92
15.379
2.620
T P
1cie_A
108
263
55
2.21
5.45
15.346
2.377
T P
2i8f_A
82
263
52
1.93
28.85
15.304
2.556
T P
1cig_A
108
263
53
2.05
11.32
15.117
2.462
T P
1cih_A
108
263
53
2.11
9.43
15.088
2.401
T P
2ycc_A
108
263
52
2.08
15.38
15.072
2.389
T P
1csw_A
108
263
53
2.11
7.55
15.031
2.394
T P
3c2c_A
112
263
50
2.06
16.00
15.013
2.312
T P
1csx_A
108
263
54
2.20
5.56
15.001
2.349
T P
1chj_A
108
263
51
2.08
3.92
14.726
2.341
T P
1cch_A
82
263
52
2.04
26.92
14.714
2.431
T P
1yfc_A
108
263
54
2.42
9.26
14.580
2.144
T P
1irw_A
108
263
51
2.14
7.84
14.481
2.275
T P
3cx5_W
108
263
51
2.03
9.80
14.416
2.393
T P
1wve_C
75
263
52
2.35
17.31
14.056
2.120
T P
1hzu_A
521
263
57
2.70
1.75
13.951
2.035
T P
1nir_B
539
263
57
2.86
5.26
13.716
1.924
T P
1e2r_B
543
263
55
2.53
0.00
13.699
2.094
T P
1hj5_A
559
263
55
2.78
7.27
13.649
1.912
T P
1qks_A
559
263
55
2.70
5.45
13.290
1.965
T P
1i8o_A
114
263
49
2.73
10.20
13.239
1.730
T P
1jdl_A
118
263
53
2.64
11.32
12.953
1.935
T P
1gq1_A
559
263
54
2.89
7.41
12.832
1.806
T P
1hzv_A
514
263
50
2.73
8.00
12.585
1.767
T P
1lms_A
95
263
46
2.43
4.35
12.132
1.817
T P
1ytc_A
112
263
48
2.66
2.08
11.609
1.737
T P
1rap_A
108
263
46
2.57
8.70
11.377
1.722
T P
1crh_A
108
263
46
2.76
4.35
11.285
1.606
T P
2b12_B
108
263
45
2.70
0.00
11.210
1.606
T P
1hro_A
105
263
44
2.79
4.55
11.081
1.523
T P
2fw5_A
125
263
36
2.53
11.11
10.079
1.367
T P
2fwt_A
112
263
35
2.78
8.57
9.178
1.216
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]