LGA
Sequence Independent Analysis (LGA)
Frame of reference: Cat.Q2246_545_127.5wLII_11077_37
Total number of 3D structures: 100
LGA calculations using distance cutoff DIST: 4.0 A
Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY
Structure Deviation Summary
Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)
Structures ordered by LGA_S - score
Structure |
NS |
NT |
N(dist=4.0) |
RMSD(N) |
Seq_ID(N) |
LGA_S |
LGA_Q |
PLOTS |
2c1v_A |
335 |
263 |
237 |
1.09 |
17.72 |
87.487 |
19.905 |
T P |
2vhd_A |
323 |
263 |
235 |
1.23 |
14.89 |
85.591 |
17.700 |
T P |
1iqc_A |
308 |
263 |
228 |
1.32 |
13.60 |
82.108 |
16.026 |
T P |
1nml_A |
316 |
263 |
194 |
1.80 |
15.46 |
66.819 |
10.224 |
T P |
1zzh_B |
308 |
263 |
189 |
2.00 |
17.46 |
60.009 |
8.995 |
T P |
1h32_A |
261 |
263 |
81 |
2.11 |
9.88 |
22.800 |
3.665 |
T P |
1w2l_A |
97 |
263 |
64 |
1.74 |
20.31 |
20.459 |
3.478 |
T P |
1h1o_A |
172 |
263 |
69 |
2.41 |
17.39 |
19.720 |
2.752 |
T P |
1yiq_A |
684 |
263 |
65 |
1.97 |
13.85 |
19.327 |
3.144 |
T P |
2dge_A |
102 |
263 |
65 |
1.99 |
16.92 |
19.059 |
3.108 |
T P |
1f1f_A |
88 |
263 |
59 |
1.71 |
10.17 |
18.258 |
3.254 |
T P |
1ql3_A |
99 |
263 |
60 |
1.86 |
16.67 |
17.988 |
3.067 |
T P |
1ctj_A |
89 |
263 |
60 |
1.97 |
15.00 |
17.941 |
2.892 |
T P |
1h32_B |
134 |
263 |
59 |
1.84 |
11.86 |
17.941 |
3.045 |
T P |
1kib_A |
89 |
263 |
60 |
1.75 |
10.00 |
17.935 |
3.235 |
T P |
2c1d_B |
137 |
263 |
59 |
1.97 |
8.47 |
17.868 |
2.845 |
T P |
2zbo_A |
86 |
263 |
59 |
1.95 |
15.25 |
17.853 |
2.885 |
T P |
1qn2_A |
99 |
263 |
58 |
1.76 |
10.34 |
17.811 |
3.114 |
T P |
2aiu_A |
104 |
263 |
60 |
1.93 |
16.67 |
17.698 |
2.949 |
T P |
1cyj_A |
90 |
263 |
59 |
1.85 |
20.34 |
17.696 |
3.020 |
T P |
1mg2_D |
147 |
263 |
61 |
2.18 |
16.39 |
17.688 |
2.670 |
T P |
1wej_F |
104 |
263 |
60 |
2.03 |
16.67 |
17.669 |
2.815 |
T P |
1ls9_A |
91 |
263 |
58 |
1.87 |
20.69 |
17.646 |
2.939 |
T P |
2gc4_D |
147 |
263 |
61 |
2.16 |
16.39 |
17.439 |
2.703 |
T P |
1j3s_A |
104 |
263 |
59 |
1.97 |
13.56 |
17.370 |
2.846 |
T P |
3cp5_A |
116 |
263 |
59 |
1.98 |
13.56 |
17.340 |
2.832 |
T P |
1co6_A |
107 |
263 |
58 |
1.88 |
10.34 |
17.327 |
2.923 |
T P |
2b10_B |
108 |
263 |
57 |
1.90 |
10.53 |
17.272 |
2.847 |
T P |
2ce0_A |
99 |
263 |
61 |
2.00 |
16.39 |
17.244 |
2.910 |
T P |
1i54_A |
103 |
263 |
56 |
1.80 |
19.64 |
17.225 |
2.952 |
T P |
1gdv_A |
85 |
263 |
60 |
2.14 |
26.67 |
17.133 |
2.680 |
T P |
1ycc_A |
108 |
263 |
58 |
2.00 |
12.07 |
17.127 |
2.767 |
T P |
2jqr_A |
108 |
263 |
58 |
2.00 |
10.34 |
17.127 |
2.767 |
T P |
1cri_A |
108 |
263 |
58 |
1.98 |
12.07 |
17.051 |
2.784 |
T P |
2v08_A |
84 |
263 |
57 |
2.09 |
24.56 |
16.976 |
2.608 |
T P |
1c6r_A |
88 |
263 |
56 |
2.05 |
23.21 |
16.950 |
2.607 |
T P |
1dt1_A |
129 |
263 |
57 |
2.09 |
17.54 |
16.931 |
2.603 |
T P |
1chh_A |
108 |
263 |
55 |
1.82 |
12.73 |
16.838 |
2.869 |
T P |
1umm_A |
149 |
263 |
57 |
2.00 |
15.79 |
16.823 |
2.720 |
T P |
2b11_B |
108 |
263 |
55 |
1.83 |
12.73 |
16.820 |
2.855 |
T P |
1raq_A |
108 |
263 |
57 |
2.02 |
10.53 |
16.731 |
2.683 |
T P |
2v07_A |
98 |
263 |
60 |
2.11 |
16.67 |
16.726 |
2.714 |
T P |
1m70_A |
190 |
263 |
64 |
2.75 |
4.69 |
16.443 |
2.249 |
T P |
2bcn_B |
108 |
263 |
57 |
2.00 |
12.28 |
16.438 |
2.719 |
T P |
2b4z_A |
104 |
263 |
57 |
1.96 |
14.04 |
16.309 |
2.765 |
T P |
1yeb_A |
108 |
263 |
59 |
2.06 |
10.17 |
16.304 |
2.726 |
T P |
2fwl_A |
129 |
263 |
58 |
2.10 |
15.52 |
16.261 |
2.639 |
T P |
1ctz_A |
108 |
263 |
58 |
2.09 |
12.07 |
16.187 |
2.646 |
T P |
1c52_A |
131 |
263 |
56 |
2.08 |
17.86 |
16.180 |
2.564 |
T P |
1c7m_A |
100 |
263 |
56 |
1.91 |
14.29 |
16.131 |
2.784 |
T P |
1c6s_A |
87 |
263 |
58 |
1.99 |
20.69 |
16.093 |
2.769 |
T P |
1ccr_A |
111 |
263 |
58 |
2.18 |
10.34 |
15.945 |
2.548 |
T P |
1foc_A |
128 |
263 |
57 |
2.14 |
17.54 |
15.924 |
2.543 |
T P |
1fhb_A |
108 |
263 |
58 |
2.13 |
8.62 |
15.889 |
2.602 |
T P |
1cyc_A |
103 |
263 |
59 |
2.11 |
18.64 |
15.838 |
2.670 |
T P |
1csu_A |
108 |
263 |
56 |
2.14 |
7.14 |
15.821 |
2.500 |
T P |
351c_A |
82 |
263 |
52 |
1.92 |
26.92 |
15.785 |
2.570 |
T P |
3cxh_W |
112 |
263 |
56 |
1.94 |
8.93 |
15.769 |
2.744 |
T P |
1yea_A |
112 |
263 |
55 |
1.90 |
9.09 |
15.735 |
2.756 |
T P |
1cor_A |
82 |
263 |
54 |
2.17 |
27.78 |
15.707 |
2.380 |
T P |
1irv_A |
108 |
263 |
58 |
2.22 |
5.17 |
15.699 |
2.497 |
T P |
1crg_A |
108 |
263 |
57 |
2.19 |
7.02 |
15.681 |
2.493 |
T P |
1cif_A |
108 |
263 |
57 |
2.18 |
8.77 |
15.636 |
2.495 |
T P |
2jti_B |
103 |
263 |
58 |
2.31 |
5.17 |
15.610 |
2.405 |
T P |
1s6v_B |
108 |
263 |
55 |
2.11 |
14.55 |
15.610 |
2.490 |
T P |
2b0z_B |
108 |
263 |
58 |
2.33 |
6.90 |
15.596 |
2.386 |
T P |
1csv_A |
108 |
263 |
57 |
2.20 |
7.02 |
15.474 |
2.483 |
T P |
1chi_A |
108 |
263 |
56 |
2.17 |
5.36 |
15.428 |
2.467 |
T P |
1fi3_A |
82 |
263 |
52 |
1.88 |
26.92 |
15.379 |
2.620 |
T P |
1cie_A |
108 |
263 |
55 |
2.21 |
5.45 |
15.346 |
2.377 |
T P |
2i8f_A |
82 |
263 |
52 |
1.93 |
28.85 |
15.304 |
2.556 |
T P |
1cig_A |
108 |
263 |
53 |
2.05 |
11.32 |
15.117 |
2.462 |
T P |
1cih_A |
108 |
263 |
53 |
2.11 |
9.43 |
15.088 |
2.401 |
T P |
2ycc_A |
108 |
263 |
52 |
2.08 |
15.38 |
15.072 |
2.389 |
T P |
1csw_A |
108 |
263 |
53 |
2.11 |
7.55 |
15.031 |
2.394 |
T P |
3c2c_A |
112 |
263 |
50 |
2.06 |
16.00 |
15.013 |
2.312 |
T P |
1csx_A |
108 |
263 |
54 |
2.20 |
5.56 |
15.001 |
2.349 |
T P |
1chj_A |
108 |
263 |
51 |
2.08 |
3.92 |
14.726 |
2.341 |
T P |
1cch_A |
82 |
263 |
52 |
2.04 |
26.92 |
14.714 |
2.431 |
T P |
1yfc_A |
108 |
263 |
54 |
2.42 |
9.26 |
14.580 |
2.144 |
T P |
1irw_A |
108 |
263 |
51 |
2.14 |
7.84 |
14.481 |
2.275 |
T P |
3cx5_W |
108 |
263 |
51 |
2.03 |
9.80 |
14.416 |
2.393 |
T P |
1wve_C |
75 |
263 |
52 |
2.35 |
17.31 |
14.056 |
2.120 |
T P |
1hzu_A |
521 |
263 |
57 |
2.70 |
1.75 |
13.951 |
2.035 |
T P |
1nir_B |
539 |
263 |
57 |
2.86 |
5.26 |
13.716 |
1.924 |
T P |
1e2r_B |
543 |
263 |
55 |
2.53 |
0.00 |
13.699 |
2.094 |
T P |
1hj5_A |
559 |
263 |
55 |
2.78 |
7.27 |
13.649 |
1.912 |
T P |
1qks_A |
559 |
263 |
55 |
2.70 |
5.45 |
13.290 |
1.965 |
T P |
1i8o_A |
114 |
263 |
49 |
2.73 |
10.20 |
13.239 |
1.730 |
T P |
1jdl_A |
118 |
263 |
53 |
2.64 |
11.32 |
12.953 |
1.935 |
T P |
1gq1_A |
559 |
263 |
54 |
2.89 |
7.41 |
12.832 |
1.806 |
T P |
1hzv_A |
514 |
263 |
50 |
2.73 |
8.00 |
12.585 |
1.767 |
T P |
1lms_A |
95 |
263 |
46 |
2.43 |
4.35 |
12.132 |
1.817 |
T P |
1ytc_A |
112 |
263 |
48 |
2.66 |
2.08 |
11.609 |
1.737 |
T P |
1rap_A |
108 |
263 |
46 |
2.57 |
8.70 |
11.377 |
1.722 |
T P |
1crh_A |
108 |
263 |
46 |
2.76 |
4.35 |
11.285 |
1.606 |
T P |
2b12_B |
108 |
263 |
45 |
2.70 |
0.00 |
11.210 |
1.606 |
T P |
1hro_A |
105 |
263 |
44 |
2.79 |
4.55 |
11.081 |
1.523 |
T P |
2fw5_A |
125 |
263 |
36 |
2.53 |
11.11 |
10.079 |
1.367 |
T P |
2fwt_A |
112 |
263 |
35 |
2.78 |
8.57 |
9.178 |
1.216 |
T P |
NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)
Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures",
Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374.
[MEDLINE]