LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_129.5wLII_11077_43
Total number of 3D structures: 36
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
2j1g_E
218
93
85
1.22
15.29
88.988
6.429
T P
2j61_A
216
93
84
1.16
15.48
87.658
6.674
T P
2j5z_A
214
93
85
1.31
16.47
87.601
6.020
T P
1re3_E
301
93
84
1.51
10.71
87.347
5.225
T P
2jhk_F
217
93
85
1.40
14.12
87.314
5.668
T P
3e1i_B
298
93
84
1.46
11.90
87.276
5.394
T P
2jhm_F
217
93
85
1.40
14.12
87.234
5.657
T P
1m1j_B
402
93
84
1.48
10.71
87.215
5.330
T P
3bvh_B
298
93
84
1.47
11.90
87.215
5.336
T P
2oyh_B
298
93
85
1.66
10.59
87.116
4.840
T P
2d39_C
212
93
83
0.94
16.87
87.012
7.988
T P
2j3o_B
218
93
83
1.13
15.66
86.969
6.775
T P
2z4e_B
303
93
84
1.46
11.90
86.932
5.394
T P
1fzc_B
308
93
84
1.49
11.90
86.776
5.272
T P
2j3f_D
217
93
83
1.18
14.46
86.521
6.485
T P
1deq_B
380
93
83
1.48
12.05
86.347
5.240
T P
1jc9_A
220
93
85
1.56
12.94
86.031
5.125
T P
1z3s_A
216
93
85
1.58
12.94
84.923
5.063
T P
2gy7_A
216
93
85
1.46
12.94
84.861
5.463
T P
1lwu_B
315
93
84
1.71
9.52
84.522
4.642
T P
2fib_A
250
93
83
1.64
9.64
84.102
4.759
T P
1n73_C
322
93
83
1.66
12.05
84.036
4.719
T P
1z3u_A
216
93
84
1.50
13.10
83.979
5.263
T P
3fib_A
249
93
83
1.66
9.64
83.942
4.718
T P
1lwu_C
317
93
83
1.66
12.05
83.909
4.708
T P
1rf1_C
298
93
82
1.66
9.76
83.465
4.663
T P
1deq_C
370
93
83
1.80
9.64
83.418
4.361
T P
3bvh_C
293
93
82
1.64
9.76
83.329
4.708
T P
2hlo_C
292
93
82
1.71
9.76
83.310
4.522
T P
2oyh_C
299
93
82
1.65
9.76
83.234
4.680
T P
1m1j_C
390
93
82
1.67
10.98
83.206
4.632
T P
2h43_C
290
93
82
1.69
9.76
82.980
4.593
T P
1fzc_C
301
93
82
1.69
9.76
82.819
4.574
T P
1ei3_C
397
93
82
1.69
10.98
82.819
4.574
T P
1re3_F
291
93
81
1.68
9.88
82.739
4.557
T P
1fzd_A
197
93
52
1.73
11.54
52.009
2.844
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]