LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_131.5wLII_11077_47
Total number of 3D structures: 99
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1wve_C
75
67
66
0.96
31.82
96.498
6.240
T P
3dp5_A
99
67
62
1.69
20.97
85.847
3.456
T P
1hzu_A
521
67
61
1.59
22.95
85.042
3.607
T P
1yiq_A
684
67
61
1.85
22.95
84.508
3.132
T P
2v08_A
84
67
61
1.67
26.23
84.492
3.437
T P
2zbo_A
86
67
61
1.83
26.23
84.241
3.164
T P
1kv9_A
664
67
60
1.74
28.33
84.146
3.268
T P
1e2r_B
543
67
61
1.70
14.75
83.877
3.387
T P
1gdv_A
85
67
61
1.82
26.23
83.831
3.169
T P
1kib_A
89
67
61
1.73
21.31
83.458
3.331
T P
1f1f_A
88
67
61
1.76
21.31
83.379
3.283
T P
1m70_A
190
67
62
1.81
14.52
83.242
3.251
T P
1nir_B
539
67
61
1.78
21.31
82.495
3.253
T P
1c52_A
131
67
60
1.76
26.67
82.312
3.230
T P
1kb0_A
669
67
60
1.86
18.33
82.213
3.066
T P
2d0w_A
168
67
60
1.82
21.67
82.197
3.133
T P
3cp5_A
116
67
59
1.64
25.42
81.926
3.387
T P
1dt1_A
129
67
59
1.71
27.12
81.291
3.259
T P
1c6r_A
88
67
61
1.94
22.95
81.231
2.991
T P
1j3s_A
104
67
60
1.89
25.00
81.179
3.021
T P
1cig_A
108
67
60
1.92
21.67
81.140
2.973
T P
1hro_A
105
67
59
1.83
23.73
80.978
3.052
T P
3cxh_W
112
67
59
1.89
22.03
80.846
2.964
T P
1ctj_A
89
67
59
1.83
22.03
80.698
3.049
T P
1cie_A
108
67
60
1.93
21.67
80.636
2.961
T P
1rap_A
108
67
59
1.89
22.03
80.538
2.967
T P
1cri_A
108
67
60
1.96
21.67
80.532
2.906
T P
1raq_A
108
67
60
1.93
21.67
80.492
2.961
T P
2b12_B
108
67
59
1.92
22.03
80.073
2.916
T P
1crh_A
108
67
59
1.91
22.03
80.054
2.930
T P
2aiu_A
104
67
59
1.93
23.73
79.831
2.902
T P
1umm_A
149
67
58
1.95
24.14
79.633
2.830
T P
1csx_A
108
67
59
1.96
22.03
79.567
2.868
T P
2b0z_B
108
67
59
1.94
22.03
79.556
2.892
T P
1s6v_B
108
67
58
1.87
22.41
79.399
2.944
T P
1ccr_A
111
67
59
1.95
25.42
79.313
2.872
T P
1ls9_A
91
67
60
2.07
21.67
79.274
2.761
T P
1fhb_A
108
67
58
1.88
20.69
79.262
2.933
T P
2fwl_A
129
67
59
1.89
27.12
78.528
2.968
T P
1foc_A
128
67
57
1.77
26.32
77.459
3.049
T P
1kx2_A
81
67
57
1.88
17.54
77.410
2.882
T P
1jdl_A
118
67
56
1.78
30.36
77.258
2.984
T P
2ce0_A
99
67
60
1.91
26.67
75.292
2.983
T P
1hzv_A
514
67
57
1.97
21.05
74.655
2.757
T P
1mg2_D
147
67
61
2.01
18.03
72.743
2.887
T P
2v07_A
98
67
59
2.18
25.42
72.172
2.583
T P
2gc4_D
147
67
60
1.95
18.33
71.675
2.928
T P
1w5c_T
136
67
60
1.96
20.00
71.543
2.916
T P
2b11_B
108
67
59
2.00
22.03
71.452
2.803
T P
1cyj_A
90
67
58
1.77
25.86
71.365
3.101
T P
1f1c_A
129
67
60
1.93
20.00
71.090
2.962
T P
1gq1_A
559
67
52
1.81
17.31
70.948
2.729
T P
1hj5_A
559
67
52
1.84
17.31
70.542
2.682
T P
1irw_A
108
67
59
2.02
22.03
70.133
2.777
T P
1ytc_A
112
67
58
1.96
22.41
70.098
2.818
T P
1cih_A
108
67
58
1.98
22.41
70.009
2.785
T P
2dge_A
102
67
59
1.98
23.73
70.009
2.833
T P
1irv_A
108
67
59
2.03
22.03
69.989
2.773
T P
1qks_A
559
67
51
1.82
17.65
69.877
2.655
T P
3cx5_W
108
67
58
2.07
22.41
69.865
2.670
T P
1yeb_A
108
67
58
2.00
22.41
69.811
2.760
T P
2bcn_B
108
67
58
2.05
22.41
69.697
2.699
T P
1yea_A
112
67
58
2.00
22.41
69.687
2.763
T P
1ctz_A
108
67
59
2.04
22.03
69.601
2.763
T P
1chi_A
108
67
58
2.00
22.41
69.535
2.761
T P
2ycc_A
108
67
59
2.10
22.03
69.424
2.687
T P
1csv_A
108
67
58
2.00
20.69
69.411
2.763
T P
1chj_A
108
67
58
2.00
22.41
69.339
2.762
T P
1csw_A
108
67
58
2.01
22.41
69.313
2.752
T P
1c6s_A
87
67
59
2.03
23.73
69.219
2.766
T P
1crg_A
108
67
59
2.08
22.03
68.986
2.707
T P
1yfc_A
108
67
58
2.03
22.41
68.928
2.727
T P
1wej_F
104
67
58
1.98
24.14
68.782
2.786
T P
1cif_A
108
67
59
2.09
22.03
68.757
2.692
T P
1chh_A
108
67
58
2.05
22.41
68.698
2.701
T P
2b4z_A
104
67
59
2.09
23.73
68.684
2.693
T P
1ycc_A
108
67
58
2.04
22.41
68.586
2.708
T P
2jqr_A
108
67
58
2.04
22.41
68.586
2.708
T P
1csu_A
108
67
58
2.06
22.41
68.559
2.684
T P
2jti_B
103
67
60
2.20
21.67
68.537
2.614
T P
1i54_A
103
67
58
2.12
27.59
68.129
2.610
T P
1h1o_A
172
67
56
1.88
19.64
67.910
2.834
T P
2b10_B
108
67
59
2.15
22.03
64.110
2.625
T P
1cyc_A
103
67
57
2.23
29.82
60.881
2.444
T P
1pby_A
489
67
52
2.16
19.23
59.365
2.302
T P
1jmx_A
493
67
52
2.25
13.46
58.853
2.211
T P
2blf_B
81
67
50
1.98
8.00
58.432
2.404
T P
2fw5_A
125
67
48
2.17
12.50
55.027
2.113
T P
2fwt_A
112
67
48
2.26
8.33
54.016
2.034
T P
1lms_A
95
67
48
2.26
22.92
50.175
2.035
T P
2j8s_A
1044
67
40
2.38
2.50
42.926
1.614
T P
2gif_B
1044
67
37
2.36
2.70
42.693
1.501
T P
2dhh_A
1022
67
39
2.80
7.69
40.958
1.344
T P
2hqd_A
1016
67
39
2.56
0.00
40.607
1.467
T P
2hqc_A
1016
67
40
2.75
5.00
38.936
1.402
T P
2hqg_A
1016
67
36
2.54
5.56
38.608
1.363
T P
2i6w_A
1019
67
35
2.50
2.86
38.468
1.348
T P
1t9x_A
1014
67
36
2.52
0.00
37.294
1.372
T P
2hqf_A
1016
67
34
2.49
2.94
36.304
1.312
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]