LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_135.5wLII_11080_4
Total number of 3D structures: 58
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
2d29_A
386
109
102
1.63
18.63
89.075
5.909
T P
1egd_A
387
109
102
1.71
12.75
88.588
5.650
T P
2a1t_C
388
109
102
1.71
12.75
88.126
5.647
T P
2uxw_A
567
109
104
1.84
14.42
87.991
5.361
T P
1ege_A
387
109
102
1.71
12.75
87.888
5.637
T P
3b96_A
554
109
101
1.69
14.85
87.321
5.653
T P
2jif_A
381
109
101
1.82
13.86
87.270
5.267
T P
1jqi_A
384
109
100
1.77
15.00
87.051
5.344
T P
3mdd_A
385
109
101
1.75
10.89
86.826
5.448
T P
1ukw_A
379
109
100
1.72
15.00
86.818
5.501
T P
1udy_A
385
109
101
1.78
10.89
86.432
5.382
T P
1w07_B
658
109
106
1.94
11.32
86.327
5.188
T P
2vig_E
380
109
98
1.54
16.33
86.154
5.964
T P
2eba_A
380
109
102
1.78
11.76
86.049
5.436
T P
1rx0_A
384
109
100
1.72
15.00
85.418
5.482
T P
2fon_B
656
109
107
2.08
12.15
85.394
4.904
T P
2dvl_A
370
109
98
1.73
16.33
83.735
5.360
T P
2r0n_A
390
109
103
2.06
9.71
83.577
4.771
T P
1siq_A
390
109
100
1.84
10.00
83.236
5.161
T P
2r0m_A
390
109
103
2.09
9.71
82.955
4.700
T P
2pg0_A
380
109
99
1.81
18.18
82.938
5.185
T P
2z1q_B
549
109
101
1.90
17.82
82.922
5.059
T P
1buc_A
383
109
96
1.54
15.62
82.641
5.841
T P
3eom_A
387
109
100
2.04
10.00
80.927
4.666
T P
2c0u_A
430
109
95
1.79
11.58
80.432
5.037
T P
2c12_A
430
109
94
1.68
11.70
80.235
5.294
T P
2reh_A
430
109
95
1.79
11.58
80.227
5.027
T P
2zaf_A
430
109
95
1.79
11.58
80.191
5.020
T P
2ddh_A
622
109
100
2.03
11.00
79.901
4.705
T P
1ivh_A
387
109
94
1.74
13.83
79.545
5.122
T P
2ix6_A
416
109
96
1.86
9.38
79.062
4.893
T P
2ix5_A
415
109
96
1.89
9.38
78.677
4.827
T P
1r2j_A
353
109
93
1.91
10.75
77.640
4.621
T P
3djl_A
538
109
95
2.16
13.68
74.047
4.209
T P
2jbr_A
399
109
97
2.17
7.22
67.941
4.275
T P
2qr4_A
521
109
62
2.23
9.68
44.239
2.659
T P
3ce2_A
595
109
59
2.18
10.17
42.231
2.592
T P
1j36_A
598
109
59
2.16
1.69
42.127
2.608
T P
2h1n_A
566
109
66
2.62
6.06
41.311
2.430
T P
1afr_A
345
109
66
2.63
1.52
41.212
2.422
T P
2j2f_A
348
109
64
2.75
4.69
41.022
2.249
T P
2oc2_A
583
109
58
2.37
1.72
40.969
2.352
T P
3bkk_A
586
109
60
2.37
3.33
40.805
2.428
T P
2iul_A
583
109
59
2.41
5.08
40.047
2.351
T P
2iux_A
577
109
61
2.26
3.28
39.891
2.586
T P
2uw1_B
338
109
61
2.63
1.64
39.836
2.235
T P
2uw1_A
327
109
58
2.39
3.45
38.677
2.325
T P
1oq4_A
346
109
58
2.46
1.72
38.413
2.265
T P
1i1i_P
665
109
55
2.51
5.45
37.854
2.103
T P
2o3e_A
665
109
54
2.53
5.56
37.281
2.052
T P
1s4b_P
654
109
53
2.43
1.89
36.414
2.094
T P
2o36_A
654
109
50
2.48
2.00
35.320
1.941
T P
2ajf_A
597
109
59
2.67
6.78
35.022
2.133
T P
1r42_A
597
109
56
2.46
7.14
34.547
2.186
T P
1y79_1
680
109
55
2.68
3.64
34.514
1.981
T P
2c6n_A
612
109
53
2.50
0.00
34.150
2.038
T P
3d0g_A
597
109
54
2.80
5.56
33.939
1.859
T P
1uze_A
574
109
53
2.60
11.32
33.099
1.960
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]