LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_139.5wLII_11111_19
Total number of 3D structures: 110
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1ehy_A
282
121
115
0.67
15.65
94.418
14.905
T P
1y37_A
294
121
112
1.34
11.61
88.350
7.778
T P
2cjp_A
320
121
114
1.53
9.65
87.991
6.988
T P
3cxu_A
320
121
113
1.50
9.73
87.759
7.075
T P
1zd3_A
547
121
112
1.30
13.39
87.585
7.986
T P
1cqz_B
541
121
112
1.32
11.61
87.545
7.870
T P
2og1_A
285
121
109
1.39
11.93
85.776
7.292
T P
2zjf_A
346
121
109
1.25
11.01
85.769
8.084
T P
2e3j_A
346
121
109
1.23
11.93
85.766
8.184
T P
2puj_A
283
121
109
1.47
11.93
85.476
6.941
T P
2rhw_A
283
121
109
1.47
11.93
85.472
6.936
T P
2vf2_A
284
121
109
1.40
16.51
85.389
7.265
T P
2d0d_A
271
121
109
1.41
11.01
85.229
7.201
T P
1iup_A
271
121
109
1.42
11.01
85.033
7.166
T P
1j1i_A
258
121
109
1.45
12.84
84.660
7.037
T P
1b6g_A
308
121
110
1.74
11.82
84.321
5.971
T P
1u2e_A
286
121
109
1.55
16.51
84.120
6.596
T P
2yxp_X
310
121
110
1.78
12.73
83.743
5.836
T P
1be0_A
310
121
110
1.80
12.73
83.576
5.787
T P
1bez_A
310
121
110
1.79
12.73
83.507
5.822
T P
1hde_A
310
121
109
1.78
12.84
83.229
5.812
T P
2v9z_A
302
121
107
1.69
14.95
81.963
5.992
T P
1cqw_A
295
121
107
1.64
14.95
81.564
6.141
T P
1a8s_A
273
121
105
1.44
13.33
81.492
6.827
T P
1bn6_A
291
121
107
1.67
14.95
81.456
6.046
T P
1a8q_A
274
121
105
1.49
13.33
81.448
6.610
T P
1a88_A
275
121
105
1.47
9.52
81.311
6.703
T P
1va4_A
271
121
105
1.50
12.38
81.028
6.582
T P
1zoi_A
275
121
105
1.45
11.43
80.680
6.774
T P
3fob_A
277
121
103
1.47
17.48
80.437
6.575
T P
1bro_A
277
121
104
1.63
15.38
80.278
6.016
T P
1cv2_A
293
121
109
1.87
11.01
80.166
5.531
T P
1brt_A
277
121
104
1.60
15.38
80.140
6.110
T P
1g42_A
293
121
108
1.81
11.11
80.094
5.646
T P
1iz7_A
294
121
108
1.80
11.11
79.967
5.698
T P
1a8u_A
277
121
104
1.61
15.38
79.611
6.066
T P
1hkh_A
279
121
103
1.58
15.53
79.589
6.121
T P
1mj5_A
297
121
107
1.87
11.21
73.206
5.427
T P
1wm1_A
313
121
103
1.99
6.80
72.376
4.922
T P
2ho3_D
304
121
60
2.36
8.33
33.518
2.441
T P
1evj_A
340
121
61
2.42
6.56
33.513
2.422
T P
1h6d_A
383
121
57
2.29
8.77
32.507
2.385
T P
2ho5_A
305
121
58
2.40
6.90
32.479
2.320
T P
1ofg_A
381
121
62
2.51
6.45
32.311
2.374
T P
3e9m_A
321
121
56
2.27
12.50
32.033
2.358
T P
2ixa_A
426
121
59
2.62
3.39
32.022
2.170
T P
3db2_A
347
121
59
2.38
6.78
31.999
2.379
T P
1ryd_A
381
121
61
2.48
6.56
31.898
2.365
T P
3f4l_A
344
121
56
2.39
3.57
31.675
2.251
T P
2nvw_A
413
121
58
2.34
15.52
31.210
2.374
T P
1lc0_A
290
121
57
2.59
3.51
31.197
2.122
T P
3ec7_A
336
121
59
2.51
11.86
31.132
2.260
T P
3euw_A
333
121
56
2.49
16.07
31.034
2.159
T P
1zh8_A
325
121
58
2.43
6.90
30.992
2.294
T P
2h63_D
285
121
54
2.37
12.96
30.836
2.184
T P
3c1a_A
307
121
56
2.47
12.50
30.665
2.183
T P
2o4u_X
331
121
56
2.51
8.93
30.634
2.146
T P
3fhl_C
338
121
57
2.57
10.53
30.456
2.133
T P
1tlt_B
305
121
55
2.44
10.91
30.304
2.168
T P
1xea_A
311
121
56
2.49
12.50
30.241
2.165
T P
2glx_A
332
121
56
2.59
10.71
30.219
2.081
T P
3btu_A
392
121
53
2.48
3.77
30.170
2.056
T P
1gcu_A
292
121
50
2.43
14.00
29.402
1.977
T P
1ydw_B
350
121
54
2.52
3.70
29.242
2.062
T P
3e82_D
350
121
55
2.46
14.55
29.079
2.148
T P
1p4c_A
353
121
53
2.59
7.55
28.520
1.968
T P
3e18_A
348
121
49
2.53
10.20
28.199
1.866
T P
2a7n_A
353
121
52
2.58
5.77
28.191
1.941
T P
3dty_A
374
121
54
2.55
7.41
28.191
2.036
T P
1kbi_A
504
121
53
2.51
11.32
27.919
2.033
T P
2cu0_A
358
121
46
2.51
2.17
26.453
1.765
T P
2z6j_A
307
121
44
2.32
4.55
26.322
1.818
T P
1gox_A
350
121
45
2.60
6.67
26.182
1.667
T P
2c6q_B
329
121
45
2.42
11.11
26.130
1.785
T P
2oz0_A
492
121
49
2.67
10.20
25.867
1.768
T P
1ypf_A
295
121
44
2.37
13.64
25.582
1.780
T P
1tb3_A
332
121
44
2.64
6.82
25.263
1.606
T P
1nf7_A
454
121
46
2.70
6.52
25.189
1.640
T P
2cdh_0
226
121
42
2.53
11.90
25.066
1.599
T P
2zfa_A
352
121
41
2.38
7.32
24.893
1.655
T P
1jr1_A
436
121
47
2.74
8.51
24.824
1.652
T P
3cea_A
342
121
45
2.59
11.11
24.296
1.674
T P
1ltd_A
481
121
45
2.58
8.89
24.188
1.679
T P
3ezy_A
334
121
40
2.29
10.00
24.162
1.672
T P
2rdu_A
360
121
42
2.53
7.14
24.095
1.596
T P
2p2s_A
333
121
38
2.57
5.26
23.914
1.422
T P
2nli_A
352
121
39
2.34
12.82
23.815
1.598
T P
2nzl_A
339
121
38
2.69
7.89
23.356
1.364
T P
3fd8_D
349
121
42
2.64
11.90
22.865
1.534
T P
1szf_A
395
121
37
2.44
5.41
22.809
1.455
T P
3btv_B
392
121
39
2.42
5.13
22.669
1.550
T P
1qcw_A
385
121
38
2.29
10.53
22.559
1.591
T P
2j6x_A
370
121
40
2.64
2.50
22.413
1.460
T P
1eep_A
314
121
38
2.45
2.63
22.351
1.490
T P
3evn_A
316
121
39
2.67
2.56
22.298
1.407
T P
2z6i_B
321
121
44
2.81
6.82
22.220
1.514
T P
2gjl_A
324
121
41
2.73
4.88
22.023
1.448
T P
1vrd_A
321
121
38
2.75
7.89
21.728
1.331
T P
1lco_A
480
121
36
2.44
5.56
21.710
1.418
T P
2a7r_A
338
121
40
2.64
5.00
21.008
1.461
T P
1al8_A
344
121
35
2.67
5.71
20.610
1.263
T P
3e1k_A
395
121
36
2.56
2.78
20.326
1.352
T P
1kbj_A
393
121
33
2.60
3.03
18.864
1.222
T P
1zfj_A
476
121
33
2.77
6.06
17.914
1.148
T P
1sze_A
392
121
33
2.98
12.12
17.685
1.073
T P
3bw3_A
346
121
29
2.75
3.45
16.606
1.016
T P
3bw4_A
347
121
28
2.59
10.71
16.108
1.041
T P
3bo9_A
314
121
28
2.80
7.14
15.248
0.965
T P
1gyl_A
352
121
29
2.89
10.34
15.043
0.971
T P
3bw2_A
347
121
27
2.83
18.52
14.651
0.921
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]