LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_145.5wLII_11111_49
Total number of 3D structures: 72
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
2nzi_A
292
112
86
1.06
19.77
75.094
7.415
T P
2yux_A
120
112
93
1.93
21.51
75.050
4.581
T P
1uem_A
117
112
87
1.54
21.84
73.363
5.320
T P
1tdq_A
271
112
87
1.62
17.24
73.163
5.056
T P
1x4z_A
121
112
87
1.60
19.54
73.085
5.108
T P
1x5l_A
111
112
88
1.68
10.23
72.921
4.948
T P
2edx_A
134
112
87
1.69
16.09
72.791
4.862
T P
2doc_A
119
112
87
1.55
10.34
72.787
5.279
T P
1wf5_A
121
112
87
1.72
13.79
72.274
4.775
T P
3f7r_A
214
112
87
1.58
10.34
72.145
5.177
T P
1i1r_A
301
112
87
1.79
16.09
72.086
4.601
T P
1fnf_A
368
112
88
1.90
15.91
72.022
4.400
T P
1bpv_A
104
112
87
1.55
20.69
71.973
5.286
T P
3f7p_E
212
112
86
1.50
11.63
71.793
5.388
T P
1qg3_A
195
112
87
1.85
11.49
71.448
4.472
T P
1x5f_A
120
112
87
1.70
12.64
71.315
4.838
T P
1bqu_B
215
112
88
1.88
15.91
71.166
4.448
T P
2dju_A
106
112
86
1.64
23.26
71.053
4.933
T P
1x5k_A
124
112
87
1.95
20.69
70.939
4.251
T P
1wfo_A
130
112
86
1.75
16.28
70.802
4.643
T P
2vkw_A
197
112
84
1.60
16.67
70.685
4.929
T P
2djs_A
108
112
86
1.65
18.60
70.610
4.906
T P
1cfb_A
205
112
84
1.60
11.90
70.293
4.953
T P
1x5g_A
116
112
87
1.88
19.54
70.254
4.392
T P
2uvf_A
571
112
84
1.57
21.43
70.168
5.015
T P
1x5h_A
132
112
85
1.75
11.76
70.105
4.606
T P
1x3d_A
118
112
88
1.89
17.05
70.101
4.412
T P
1x5x_A
109
112
84
1.68
20.24
70.081
4.732
T P
1va9_A
122
112
86
1.84
12.79
70.075
4.441
T P
2v5y_A
564
112
86
1.85
17.44
70.026
4.413
T P
2dlh_A
121
112
89
1.93
12.36
69.872
4.385
T P
1uey_A
127
112
82
1.50
17.07
69.854
5.126
T P
2ede_A
114
112
83
1.60
21.69
69.799
4.877
T P
2edy_A
103
112
85
1.65
12.94
69.796
4.846
T P
1k85_A
88
112
84
1.61
16.67
69.615
4.909
T P
1qr4_A
175
112
82
1.51
14.63
69.612
5.092
T P
1pvh_A
201
112
84
1.82
16.67
69.490
4.374
T P
3f7q_A
214
112
86
1.91
12.79
69.385
4.284
T P
1fnh_A
269
112
83
1.55
14.46
69.290
5.040
T P
2ee2_A
119
112
84
1.74
14.29
69.212
4.558
T P
2w1n_A
228
112
86
1.77
22.09
69.173
4.595
T P
2dmk_A
127
112
84
1.78
19.05
69.139
4.456
T P
2q7n_A
480
112
85
1.80
11.76
68.941
4.474
T P
1uen_A
125
112
84
1.82
14.29
68.781
4.372
T P
1mfn_A
184
112
84
1.80
17.86
68.781
4.411
T P
1x4x_A
106
112
85
1.87
17.65
68.260
4.305
T P
2db8_A
110
112
85
1.90
15.29
68.172
4.253
T P
1x5z_A
115
112
85
1.90
20.00
67.932
4.250
T P
2yuw_A
110
112
83
1.82
15.66
67.422
4.329
T P
1p9m_A
298
112
81
1.73
17.28
66.667
4.427
T P
2gee_A
188
112
84
1.84
17.86
66.172
4.322
T P
2dkm_A
104
112
85
2.07
24.71
64.515
3.915
T P
2qbw_A
189
112
77
1.78
15.58
63.421
4.101
T P
2ed8_A
106
112
85
1.98
14.12
63.419
4.082
T P
2vkx_E
202
112
89
2.11
12.36
62.205
4.023
T P
1wfu_A
120
112
81
1.89
16.05
62.001
4.063
T P
2ed9_A
124
112
83
2.03
13.25
61.130
3.897
T P
2dn7_A
107
112
81
2.00
17.28
60.314
3.857
T P
1bj8_A
109
112
82
1.95
15.85
57.782
4.005
T P
3b8s_A
567
112
78
2.07
16.67
56.083
3.592
T P
1ctn_A
538
112
79
2.04
8.86
55.988
3.692
T P
1x6l_A
539
112
76
2.04
9.21
55.141
3.546
T P
3b9e_A
581
112
77
2.05
16.88
54.948
3.582
T P
1edq_A
540
112
78
2.00
7.69
54.569
3.711
T P
3fl7_A
482
112
80
1.93
16.25
54.547
3.950
T P
1k9t_A
538
112
78
2.01
7.69
54.345
3.688
T P
1ehn_A
540
112
78
2.01
7.69
54.311
3.703
T P
1eib_A
540
112
78
2.01
7.69
54.292
3.693
T P
1ffr_A
540
112
78
2.02
7.69
53.652
3.676
T P
1nh6_A
540
112
77
2.06
7.79
52.856
3.573
T P
1v8h_A
106
112
71
2.15
18.31
49.673
3.149
T P
1cz1_A
394
112
33
2.61
3.03
20.684
1.218
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]