LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_146.5wLII_11111_54
Total number of 3D structures: 59
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
3b4r_A
218
211
191
0.90
23.04
88.896
19.098
T P
3ejy_A
444
211
73
2.48
6.85
23.657
2.825
T P
2ht2_A
444
211
74
2.61
6.76
23.450
2.726
T P
2ez0_A
444
211
69
2.42
5.80
23.417
2.742
T P
1otu_A
444
211
70
2.36
7.14
23.396
2.847
T P
2htk_A
444
211
71
2.50
4.23
23.208
2.731
T P
2exw_A
444
211
70
2.52
4.29
23.098
2.673
T P
1ott_A
444
211
69
2.44
4.35
22.980
2.720
T P
2ht4_A
444
211
72
2.49
6.94
22.971
2.778
T P
3det_A
444
211
71
2.39
8.45
22.963
2.847
T P
2htl_A
444
211
72
2.53
5.56
22.876
2.740
T P
2ht3_A
444
211
69
2.51
4.35
22.744
2.643
T P
2fed_A
444
211
70
2.48
7.14
22.622
2.717
T P
2exy_A
444
211
62
2.31
8.06
22.365
2.574
T P
1kpl_B
451
211
67
2.43
4.48
21.652
2.649
T P
2cu0_A
358
211
57
2.51
5.26
19.605
2.188
T P
3ddj_A
279
211
55
2.36
5.45
18.647
2.234
T P
1jcn_A
395
211
51
2.48
5.88
18.519
1.976
T P
2qlv_C
310
211
56
2.41
7.14
18.427
2.228
T P
1eep_A
314
211
56
2.63
5.36
18.268
2.052
T P
2oux_A
257
211
56
2.31
3.57
18.235
2.324
T P
2yvx_A
442
211
53
2.49
3.77
17.745
2.046
T P
1zfj_A
476
211
56
2.72
10.71
17.556
1.987
T P
2v8q_E
304
211
51
2.51
5.88
17.032
1.954
T P
1pvm_B
184
211
53
2.49
3.77
16.844
2.044
T P
2o16_B
135
211
49
2.55
10.20
16.644
1.848
T P
1nf7_A
454
211
49
2.46
2.04
16.544
1.913
T P
1jr1_A
436
211
56
3.04
3.57
16.210
1.784
T P
2j9l_C
172
211
47
2.42
8.51
16.140
1.868
T P
1pvn_A
362
211
48
2.70
6.25
15.855
1.714
T P
1mwf_A
362
211
48
2.70
6.25
15.855
1.714
T P
2ef7_A
127
211
44
2.49
11.36
15.785
1.701
T P
2yvy_A
248
211
52
2.77
1.92
15.714
1.811
T P
3fna_B
123
211
48
2.44
4.17
15.631
1.887
T P
2qrd_G
325
211
46
2.54
13.04
15.466
1.745
T P
3ctu_B
152
211
43
2.48
6.98
15.383
1.667
T P
2p9m_B
129
211
49
2.67
2.04
15.256
1.768
T P
1y5h_A
123
211
45
2.43
2.22
15.194
1.780
T P
2yzi_B
136
211
42
2.28
4.76
15.182
1.762
T P
1xkf_B
123
211
42
2.30
9.52
15.138
1.747
T P
1pbj_A
120
211
46
2.49
8.70
14.715
1.773
T P
2uv4_A
143
211
45
2.48
8.89
14.659
1.746
T P
2rc3_C
128
211
41
2.30
2.44
14.541
1.705
T P
2uv7_A
143
211
44
2.42
13.64
14.418
1.744
T P
1vr9_A
121
211
40
2.35
7.50
14.320
1.634
T P
2uv6_A
143
211
44
2.51
11.36
14.162
1.685
T P
2nyc_A
130
211
39
2.36
2.56
13.920
1.587
T P
3fhm_A
136
211
41
2.35
4.88
13.873
1.675
T P
2rih_A
131
211
41
2.52
12.20
13.742
1.566
T P
2emq_A
135
211
42
2.49
9.52
13.429
1.624
T P
2nye_A
132
211
37
2.42
2.70
13.403
1.467
T P
2yzq_A
224
211
43
2.89
4.65
13.145
1.439
T P
2oox_E
333
211
39
2.58
2.56
13.068
1.458
T P
2yvz_A
248
211
39
2.98
10.26
12.687
1.266
T P
1o50_A
141
211
35
2.35
0.00
12.392
1.426
T P
3ejz_A
444
211
30
2.33
10.00
11.576
1.233
T P
2qh1_B
185
211
36
2.55
8.33
10.950
1.358
T P
3fio_A
70
211
26
2.18
0.00
10.209
1.140
T P
1ots_A
444
211
23
2.81
13.04
7.939
0.792
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]