LGA
Sequence Independent Analysis (LGA)
Frame of reference: Cat.Q2246_545_15.5wLII_09975_6
Total number of 3D structures: 41
LGA calculations using distance cutoff DIST: 4.0 A
Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY
Structure Deviation Summary
Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)
Structures ordered by LGA_S - score
Structure |
NS |
NT |
N(dist=4.0) |
RMSD(N) |
Seq_ID(N) |
LGA_S |
LGA_Q |
PLOTS |
2c0l_A |
292 |
307 |
270 |
1.49 |
18.15 |
82.363 |
16.959 |
T P |
1fch_A |
302 |
307 |
262 |
1.52 |
18.32 |
80.366 |
16.204 |
T P |
3cv0_A |
300 |
307 |
255 |
1.46 |
13.73 |
78.832 |
16.325 |
T P |
3cvq_A |
289 |
307 |
255 |
1.53 |
13.33 |
77.960 |
15.659 |
T P |
2j9q_A |
300 |
307 |
243 |
2.00 |
16.05 |
68.438 |
11.551 |
T P |
2c0m_C |
302 |
307 |
231 |
2.00 |
16.45 |
66.096 |
10.996 |
T P |
1w3b_A |
388 |
307 |
148 |
1.94 |
8.78 |
42.947 |
7.244 |
T P |
2vq2_A |
220 |
307 |
138 |
1.95 |
7.97 |
40.245 |
6.728 |
T P |
3edt_B |
258 |
307 |
148 |
2.10 |
6.76 |
40.221 |
6.737 |
T P |
1hh8_A |
192 |
307 |
131 |
1.61 |
9.16 |
39.878 |
7.654 |
T P |
1e96_B |
185 |
307 |
133 |
1.72 |
9.02 |
39.825 |
7.290 |
T P |
2pl2_A |
194 |
307 |
146 |
1.98 |
8.22 |
39.542 |
7.022 |
T P |
1wm5_A |
205 |
307 |
131 |
1.79 |
9.16 |
38.426 |
6.930 |
T P |
2fo7_A |
136 |
307 |
123 |
1.44 |
13.82 |
37.916 |
7.994 |
T P |
3ceq_B |
269 |
307 |
127 |
1.93 |
4.72 |
37.099 |
6.243 |
T P |
2ho1_A |
222 |
307 |
129 |
2.00 |
9.30 |
36.868 |
6.143 |
T P |
2gw1_A |
487 |
307 |
133 |
2.17 |
9.02 |
35.577 |
5.863 |
T P |
1a17_A |
159 |
307 |
117 |
1.64 |
5.98 |
35.443 |
6.734 |
T P |
1elw_A |
117 |
307 |
114 |
1.39 |
6.14 |
34.861 |
7.667 |
T P |
2fi7_A |
223 |
307 |
127 |
2.04 |
6.30 |
34.776 |
5.933 |
T P |
1ihg_A |
364 |
307 |
119 |
1.91 |
13.45 |
34.606 |
5.920 |
T P |
1elr_A |
128 |
307 |
114 |
1.56 |
9.65 |
34.445 |
6.851 |
T P |
1p5q_A |
283 |
307 |
112 |
1.69 |
15.18 |
34.060 |
6.242 |
T P |
1kt1_A |
374 |
307 |
115 |
1.93 |
13.91 |
34.023 |
5.660 |
T P |
1wao_1 |
471 |
307 |
125 |
2.22 |
7.20 |
34.020 |
5.385 |
T P |
1qz2_A |
285 |
307 |
111 |
1.73 |
15.32 |
33.850 |
6.051 |
T P |
2fbn_A |
153 |
307 |
111 |
1.62 |
17.12 |
33.443 |
6.471 |
T P |
2vyi_A |
128 |
307 |
111 |
1.69 |
10.81 |
33.395 |
6.214 |
T P |
2bug_A |
131 |
307 |
109 |
1.78 |
6.42 |
32.897 |
5.795 |
T P |
1kt0_A |
357 |
307 |
110 |
1.88 |
15.45 |
32.479 |
5.568 |
T P |
2dba_A |
148 |
307 |
116 |
2.03 |
9.48 |
32.135 |
5.440 |
T P |
1na0_A |
119 |
307 |
111 |
1.99 |
14.41 |
32.095 |
5.320 |
T P |
1xnf_B |
262 |
307 |
132 |
2.31 |
13.64 |
30.532 |
5.467 |
T P |
2c2l_A |
281 |
307 |
113 |
2.15 |
6.19 |
30.465 |
5.018 |
T P |
2if4_A |
258 |
307 |
105 |
1.86 |
8.57 |
30.434 |
5.347 |
T P |
2q7f_A |
194 |
307 |
112 |
2.18 |
7.14 |
28.634 |
4.909 |
T P |
2vsn_A |
534 |
307 |
110 |
2.19 |
10.91 |
28.510 |
4.806 |
T P |
2vsy_A |
547 |
307 |
103 |
2.13 |
8.74 |
26.548 |
4.625 |
T P |
1na3_A |
86 |
307 |
84 |
1.55 |
14.29 |
25.831 |
5.076 |
T P |
1ouv_A |
265 |
307 |
90 |
2.28 |
11.11 |
22.061 |
3.788 |
T P |
2avp_A |
68 |
307 |
68 |
1.10 |
13.24 |
21.343 |
5.662 |
T P |
NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)
Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures",
Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374.
[MEDLINE]