LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_150.5wLII_11111_90
Total number of 3D structures: 58
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1jhw_A
326
135
92
1.63
16.30
65.322
5.323
T P
1j72_A
337
135
89
1.32
16.85
64.682
6.275
T P
2fgh_A
721
135
83
1.59
8.43
58.811
4.902
T P
1d0n_A
729
135
83
1.73
8.43
58.031
4.547
T P
1p8z_G
131
135
80
1.45
8.75
56.676
5.157
T P
1d4x_G
124
135
80
1.46
8.75
56.618
5.113
T P
1c0g_S
127
135
80
1.47
8.75
56.524
5.101
T P
3cip_G
128
135
80
1.51
8.75
56.472
4.977
T P
1nlv_G
123
135
80
1.47
8.75
56.465
5.104
T P
3ci5_G
126
135
80
1.46
8.75
56.410
5.113
T P
1esv_S
125
135
80
1.48
8.75
56.407
5.051
T P
2ff3_A
125
135
80
1.47
8.75
56.352
5.088
T P
1db0_B
317
135
79
1.31
8.86
56.316
5.586
T P
1t44_G
144
135
79
1.51
8.86
56.270
4.908
T P
1rgi_G
346
135
80
1.48
8.75
56.183
5.064
T P
1h1v_G
327
135
79
1.34
8.86
56.183
5.468
T P
2fh1_B
324
135
78
1.37
8.97
55.523
5.294
T P
1svy_A
102
135
77
1.91
10.39
50.861
3.838
T P
1kcq_A
103
135
74
1.75
13.51
50.832
4.004
T P
1nph_A
323
135
78
1.96
11.54
49.938
3.779
T P
1vil
126
135
77
1.93
11.69
47.759
3.792
T P
1svq_A
94
135
63
2.24
11.11
38.203
2.688
T P
1fuu_B
380
135
53
2.59
11.32
27.635
1.970
T P
1s2m_A
377
135
53
2.62
13.21
26.951
1.951
T P
2vso_A
366
135
51
2.72
7.84
25.349
1.807
T P
3ews_A
416
135
48
2.70
10.42
25.344
1.713
T P
2va8_B
695
135
49
2.40
8.16
25.108
1.958
T P
2i4i_A
408
135
46
2.68
10.87
23.218
1.656
T P
1hv8_A
363
135
44
2.73
18.18
23.186
1.557
T P
2hyi_C
392
135
45
2.60
0.00
22.860
1.669
T P
1c4o_A
504
135
43
2.50
4.65
22.716
1.652
T P
2j0s_A
391
135
47
2.66
10.64
22.647
1.705
T P
2z0m_A
331
135
43
2.58
4.65
22.547
1.602
T P
2j0u_A
366
135
44
2.73
11.36
22.378
1.556
T P
2db3_A
420
135
41
2.48
4.88
22.289
1.588
T P
1wp9_A
479
135
41
2.53
9.76
21.956
1.558
T P
1oyw_A
516
135
46
2.51
4.35
21.944
1.766
T P
1oyy_A
512
135
44
2.61
6.82
21.598
1.623
T P
3g0h_A
408
135
40
2.63
10.00
21.425
1.467
T P
2hxy_A
376
135
43
2.76
11.63
21.330
1.504
T P
2rb4_A
164
135
36
2.32
13.89
20.596
1.487
T P
1gm5_A
729
135
43
2.87
0.00
20.513
1.447
T P
2zu6_C
351
135
40
2.57
2.50
20.430
1.498
T P
2eyq_A
1146
135
42
2.66
0.00
20.276
1.524
T P
1d9x_A
590
135
40
2.64
10.00
19.950
1.462
T P
3fht_A
392
135
42
2.89
9.52
19.624
1.407
T P
1d2m_A
552
135
37
2.46
2.70
19.366
1.444
T P
1d9z_A
590
135
39
2.69
5.13
19.102
1.399
T P
2jgn_B
161
135
40
2.65
2.50
19.032
1.453
T P
2g2j_A
158
135
35
2.48
2.86
18.945
1.357
T P
2fwr_A
434
135
40
2.79
10.00
18.903
1.384
T P
1t5l_A
595
135
35
2.90
5.71
17.600
1.166
T P
3eaq_B
209
135
36
2.66
13.89
16.980
1.306
T P
2d7d_A
621
135
34
2.72
8.82
16.373
1.205
T P
2fzl_A
197
135
31
2.58
6.45
16.201
1.156
T P
2hjv_A
158
135
31
2.82
3.23
15.691
1.063
T P
1fuk_A
157
135
28
2.91
7.14
13.876
0.930
T P
2fdc_B
585
135
28
2.96
3.57
12.681
0.914
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]