LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_151.5wLII_11111_92
Total number of 3D structures: 129
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1fp3_A
402
302
285
0.60
17.19
93.945
40.684
T P
2gz6_A
372
302
261
1.60
11.49
79.730
15.323
T P
2afa_A
408
302
240
1.92
8.75
60.142
11.891
T P
2zbl_B
418
302
240
1.97
7.92
58.829
11.602
T P
2rgk_A
409
302
236
1.91
10.17
58.372
11.726
T P
1nxc_A
467
302
217
2.31
8.29
48.204
8.990
T P
1fmi_A
456
302
222
2.34
11.71
47.566
9.098
T P
1fo3_A
455
302
221
2.34
11.76
47.398
9.066
T P
1x9d_A
451
302
220
2.37
11.36
46.922
8.910
T P
1hcu_B
489
302
220
2.39
8.18
46.727
8.824
T P
2ahf_A
377
302
207
2.39
11.59
44.421
8.298
T P
2d5j_A
377
302
208
2.43
11.06
44.078
8.211
T P
1nc5_A
363
302
197
2.30
9.64
42.173
8.212
T P
2gh4_A
363
302
197
2.32
9.14
41.950
8.125
T P
1l1y_A
642
302
193
2.58
9.33
39.534
7.207
T P
1ump_A
619
302
179
2.25
12.85
39.234
7.619
T P
3sqc_A
619
302
180
2.31
12.78
38.697
7.469
T P
2sqc_A
623
302
174
2.28
12.07
38.269
7.314
T P
1wzz_A
319
302
182
2.48
6.04
38.094
7.058
T P
1ia6_A
423
302
177
2.57
4.52
37.614
6.638
T P
2v8j_A
535
302
163
2.29
7.36
37.521
6.814
T P
1w6j_A
727
302
177
2.42
7.34
37.295
7.011
T P
1tf4_A
605
302
177
2.52
5.08
36.957
6.754
T P
1w6k_A
725
302
178
2.52
7.30
36.634
6.796
T P
1g87_B
613
302
171
2.48
2.34
36.130
6.639
T P
1k72_B
612
302
170
2.52
2.94
35.694
6.489
T P
2v8i_A
543
302
166
2.43
4.82
35.498
6.568
T P
1rq5_A
602
302
154
2.56
3.25
33.135
5.796
T P
1ut9_A
605
302
152
2.54
4.61
32.677
5.767
T P
2b5e_A
483
302
66
2.45
9.09
14.938
2.590
T P
3czp_A
466
302
57
2.92
7.02
13.129
1.885
T P
1ll7_A
392
302
59
2.70
3.39
12.849
2.108
T P
2ju5_A
144
302
56
2.49
5.36
12.545
2.159
T P
2ewo_H
369
302
57
2.79
1.75
12.446
1.969
T P
2hyx_A
333
302
53
2.69
7.55
11.120
1.897
T P
3f8u_A
469
302
49
2.61
8.16
10.867
1.811
T P
1xfl_A
114
302
45
2.46
2.22
10.649
1.757
T P
1w4v_A
110
302
46
2.41
4.35
10.370
1.831
T P
1jfu_B
177
302
48
2.53
8.33
10.349
1.828
T P
2o87_A
103
302
44
2.41
6.82
10.194
1.756
T P
3dxb_D
216
302
48
2.57
8.33
10.177
1.798
T P
1uc7_A
124
302
50
2.87
4.00
10.143
1.686
T P
2eiq_A
107
302
43
2.35
6.98
10.066
1.753
T P
2f9s_A
138
302
47
2.61
10.64
10.028
1.734
T P
1wmj_A
122
302
50
2.70
8.00
10.010
1.788
T P
2o85_A
103
302
46
2.59
6.52
9.972
1.711
T P
2f51_A
111
302
47
2.74
10.64
9.889
1.654
T P
3fk8_A
131
302
47
2.66
4.26
9.824
1.700
T P
1x5c_A
121
302
44
2.71
2.27
9.784
1.569
T P
1ti3_A
113
302
45
2.70
6.67
9.783
1.610
T P
1ep7_A
112
302
39
2.38
2.56
9.702
1.571
T P
2vm1_C
113
302
40
2.41
2.50
9.604
1.591
T P
2iwt_A
108
302
41
2.52
2.44
9.589
1.563
T P
1srx_A
108
302
43
2.36
2.33
9.566
1.747
T P
2ifq_A
104
302
44
2.50
2.27
9.565
1.693
T P
1x5d_A
133
302
45
2.68
2.22
9.487
1.616
T P
1trs_A
105
302
45
2.63
0.00
9.474
1.649
T P
1d2k_A
392
302
39
2.61
7.69
9.456
1.437
T P
2j23_A
115
302
40
2.46
2.50
9.454
1.560
T P
3dyr_A
111
302
44
2.63
4.55
9.453
1.613
T P
1mek_A
120
302
42
2.77
7.14
9.402
1.463
T P
1nw2_A
105
302
42
2.69
2.38
9.398
1.507
T P
2dj3_A
133
302
42
2.51
2.38
9.292
1.607
T P
2h70_A
107
302
41
2.67
9.76
9.277
1.481
T P
2trx_A
108
302
41
2.78
12.20
9.246
1.423
T P
1tho_A
109
302
41
2.72
2.44
9.244
1.454
T P
1vrs_D
118
302
40
2.67
2.50
9.191
1.446
T P
1ep8_A
112
302
40
2.52
5.00
9.182
1.528
T P
2o7k_A
103
302
38
2.54
2.63
9.106
1.442
T P
2hsh_A
105
302
40
2.61
5.00
9.066
1.476
T P
3f9u_B
148
302
41
2.84
7.32
9.057
1.397
T P
1qgv_A
130
302
41
2.52
9.76
9.032
1.563
T P
2tir_A
108
302
43
2.56
4.65
9.022
1.616
T P
2eio_A
107
302
40
2.77
5.00
9.010
1.394
T P
1xwb_A
106
302
42
2.54
11.90
8.970
1.588
T P
1cqg_A
105
302
41
2.62
2.44
8.938
1.508
T P
1rqm_A
105
302
38
2.23
5.26
8.913
1.633
T P
1se1_B
243
302
40
2.67
10.00
8.912
1.446
T P
2vlv_B
113
302
43
2.51
6.98
8.902
1.647
T P
2h6y_A
107
302
42
2.62
7.14
8.899
1.543
T P
1m7t_A
107
302
36
2.41
5.56
8.888
1.432
T P
2ifq_B
105
302
39
2.76
15.38
8.820
1.362
T P
2h1a_B
139
302
41
2.69
12.20
8.811
1.470
T P
1t00_A
112
302
42
2.76
2.38
8.798
1.471
T P
2fd3_A
108
302
41
2.75
2.44
8.786
1.439
T P
2h71_A
107
302
42
2.80
2.38
8.779
1.450
T P
1sen_A
134
302
41
2.88
7.32
8.733
1.376
T P
3c73_B
138
302
41
2.79
12.20
8.721
1.421
T P
2cvk_A
105
302
38
2.42
13.16
8.719
1.510
T P
1o73_A
144
302
35
2.40
14.29
8.709
1.401
T P
2h1b_A
138
302
40
2.67
12.50
8.704
1.446
T P
2fch_D
107
302
39
2.56
7.69
8.702
1.467
T P
1zcp_A
106
302
39
2.68
2.56
8.684
1.402
T P
1nsw_A
105
302
40
2.56
7.50
8.675
1.505
T P
2h73_A
108
302
42
2.89
9.52
8.645
1.403
T P
2h19_A
138
302
40
2.62
12.50
8.614
1.469
T P
1txx_A
108
302
38
2.54
5.26
8.566
1.439
T P
2h74_A
108
302
38
2.61
5.26
8.564
1.405
T P
2fwh_A
117
302
37
2.80
8.11
8.554
1.275
T P
1aiu_A
105
302
37
2.62
5.41
8.510
1.360
T P
2dmm_A
142
302
37
2.73
8.11
8.503
1.306
T P
1xwa_A
111
302
40
2.75
2.50
8.475
1.404
T P
2h72_A
107
302
37
2.91
2.70
8.455
1.230
T P
2o8v_B
108
302
38
2.61
2.63
8.447
1.404
T P
1oaz_A
115
302
41
2.66
2.44
8.410
1.485
T P
2b1k_A
149
302
40
2.67
10.00
8.369
1.442
T P
2dj2_A
120
302
42
2.91
7.14
8.358
1.396
T P
2h76_A
108
302
36
2.51
2.78
8.337
1.381
T P
1keb_A
108
302
37
2.63
5.41
8.300
1.356
T P
1dby_A
107
302
41
2.89
0.00
8.293
1.372
T P
2eir_A
107
302
39
2.55
10.26
8.273
1.470
T P
1quw_A
105
302
39
2.82
2.56
8.257
1.335
T P
2i1u_A
108
302
37
2.65
2.70
8.246
1.344
T P
2oe3_A
106
302
37
2.66
5.41
8.145
1.342
T P
2yzu_A
104
302
36
2.57
2.78
8.126
1.348
T P
2h6z_A
108
302
35
2.67
2.86
8.022
1.264
T P
2gzy_A
104
302
34
2.58
2.94
8.019
1.266
T P
3c71_A
140
302
40
2.96
2.50
8.015
1.308
T P
1zzy_A
106
302
36
2.66
2.78
7.971
1.305
T P
2h1g_B
137
302
37
2.76
5.41
7.933
1.292
T P
1kng_A
144
302
34
2.65
5.88
7.915
1.235
T P
2h75_B
108
302
38
2.68
13.16
7.849
1.366
T P
2i4a_A
107
302
34
2.85
11.76
7.779
1.154
T P
2ppt_A
149
302
38
2.74
7.89
7.756
1.339
T P
2vim_A
104
302
33
2.62
6.06
7.668
1.212
T P
1f6m_C
108
302
39
2.91
7.69
7.665
1.297
T P
1st9_A
137
302
35
2.78
11.43
7.634
1.217
T P
1pqn_A
127
302
29
2.52
0.00
6.273
1.105
T P
1v98_A
92
302
25
2.72
0.00
5.803
0.887
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]