LGA
Sequence Independent Analysis (LGA)
Frame of reference: Cat.Q2246_545_151.5wLII_11111_92
Total number of 3D structures: 129
LGA calculations using distance cutoff DIST: 4.0 A
Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY
Structure Deviation Summary
Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)
Structures ordered by LGA_S - score
Structure |
NS |
NT |
N(dist=4.0) |
RMSD(N) |
Seq_ID(N) |
LGA_S |
LGA_Q |
PLOTS |
1fp3_A |
402 |
302 |
285 |
0.60 |
17.19 |
93.945 |
40.684 |
T P |
2gz6_A |
372 |
302 |
261 |
1.60 |
11.49 |
79.730 |
15.323 |
T P |
2afa_A |
408 |
302 |
240 |
1.92 |
8.75 |
60.142 |
11.891 |
T P |
2zbl_B |
418 |
302 |
240 |
1.97 |
7.92 |
58.829 |
11.602 |
T P |
2rgk_A |
409 |
302 |
236 |
1.91 |
10.17 |
58.372 |
11.726 |
T P |
1nxc_A |
467 |
302 |
217 |
2.31 |
8.29 |
48.204 |
8.990 |
T P |
1fmi_A |
456 |
302 |
222 |
2.34 |
11.71 |
47.566 |
9.098 |
T P |
1fo3_A |
455 |
302 |
221 |
2.34 |
11.76 |
47.398 |
9.066 |
T P |
1x9d_A |
451 |
302 |
220 |
2.37 |
11.36 |
46.922 |
8.910 |
T P |
1hcu_B |
489 |
302 |
220 |
2.39 |
8.18 |
46.727 |
8.824 |
T P |
2ahf_A |
377 |
302 |
207 |
2.39 |
11.59 |
44.421 |
8.298 |
T P |
2d5j_A |
377 |
302 |
208 |
2.43 |
11.06 |
44.078 |
8.211 |
T P |
1nc5_A |
363 |
302 |
197 |
2.30 |
9.64 |
42.173 |
8.212 |
T P |
2gh4_A |
363 |
302 |
197 |
2.32 |
9.14 |
41.950 |
8.125 |
T P |
1l1y_A |
642 |
302 |
193 |
2.58 |
9.33 |
39.534 |
7.207 |
T P |
1ump_A |
619 |
302 |
179 |
2.25 |
12.85 |
39.234 |
7.619 |
T P |
3sqc_A |
619 |
302 |
180 |
2.31 |
12.78 |
38.697 |
7.469 |
T P |
2sqc_A |
623 |
302 |
174 |
2.28 |
12.07 |
38.269 |
7.314 |
T P |
1wzz_A |
319 |
302 |
182 |
2.48 |
6.04 |
38.094 |
7.058 |
T P |
1ia6_A |
423 |
302 |
177 |
2.57 |
4.52 |
37.614 |
6.638 |
T P |
2v8j_A |
535 |
302 |
163 |
2.29 |
7.36 |
37.521 |
6.814 |
T P |
1w6j_A |
727 |
302 |
177 |
2.42 |
7.34 |
37.295 |
7.011 |
T P |
1tf4_A |
605 |
302 |
177 |
2.52 |
5.08 |
36.957 |
6.754 |
T P |
1w6k_A |
725 |
302 |
178 |
2.52 |
7.30 |
36.634 |
6.796 |
T P |
1g87_B |
613 |
302 |
171 |
2.48 |
2.34 |
36.130 |
6.639 |
T P |
1k72_B |
612 |
302 |
170 |
2.52 |
2.94 |
35.694 |
6.489 |
T P |
2v8i_A |
543 |
302 |
166 |
2.43 |
4.82 |
35.498 |
6.568 |
T P |
1rq5_A |
602 |
302 |
154 |
2.56 |
3.25 |
33.135 |
5.796 |
T P |
1ut9_A |
605 |
302 |
152 |
2.54 |
4.61 |
32.677 |
5.767 |
T P |
2b5e_A |
483 |
302 |
66 |
2.45 |
9.09 |
14.938 |
2.590 |
T P |
3czp_A |
466 |
302 |
57 |
2.92 |
7.02 |
13.129 |
1.885 |
T P |
1ll7_A |
392 |
302 |
59 |
2.70 |
3.39 |
12.849 |
2.108 |
T P |
2ju5_A |
144 |
302 |
56 |
2.49 |
5.36 |
12.545 |
2.159 |
T P |
2ewo_H |
369 |
302 |
57 |
2.79 |
1.75 |
12.446 |
1.969 |
T P |
2hyx_A |
333 |
302 |
53 |
2.69 |
7.55 |
11.120 |
1.897 |
T P |
3f8u_A |
469 |
302 |
49 |
2.61 |
8.16 |
10.867 |
1.811 |
T P |
1xfl_A |
114 |
302 |
45 |
2.46 |
2.22 |
10.649 |
1.757 |
T P |
1w4v_A |
110 |
302 |
46 |
2.41 |
4.35 |
10.370 |
1.831 |
T P |
1jfu_B |
177 |
302 |
48 |
2.53 |
8.33 |
10.349 |
1.828 |
T P |
2o87_A |
103 |
302 |
44 |
2.41 |
6.82 |
10.194 |
1.756 |
T P |
3dxb_D |
216 |
302 |
48 |
2.57 |
8.33 |
10.177 |
1.798 |
T P |
1uc7_A |
124 |
302 |
50 |
2.87 |
4.00 |
10.143 |
1.686 |
T P |
2eiq_A |
107 |
302 |
43 |
2.35 |
6.98 |
10.066 |
1.753 |
T P |
2f9s_A |
138 |
302 |
47 |
2.61 |
10.64 |
10.028 |
1.734 |
T P |
1wmj_A |
122 |
302 |
50 |
2.70 |
8.00 |
10.010 |
1.788 |
T P |
2o85_A |
103 |
302 |
46 |
2.59 |
6.52 |
9.972 |
1.711 |
T P |
2f51_A |
111 |
302 |
47 |
2.74 |
10.64 |
9.889 |
1.654 |
T P |
3fk8_A |
131 |
302 |
47 |
2.66 |
4.26 |
9.824 |
1.700 |
T P |
1x5c_A |
121 |
302 |
44 |
2.71 |
2.27 |
9.784 |
1.569 |
T P |
1ti3_A |
113 |
302 |
45 |
2.70 |
6.67 |
9.783 |
1.610 |
T P |
1ep7_A |
112 |
302 |
39 |
2.38 |
2.56 |
9.702 |
1.571 |
T P |
2vm1_C |
113 |
302 |
40 |
2.41 |
2.50 |
9.604 |
1.591 |
T P |
2iwt_A |
108 |
302 |
41 |
2.52 |
2.44 |
9.589 |
1.563 |
T P |
1srx_A |
108 |
302 |
43 |
2.36 |
2.33 |
9.566 |
1.747 |
T P |
2ifq_A |
104 |
302 |
44 |
2.50 |
2.27 |
9.565 |
1.693 |
T P |
1x5d_A |
133 |
302 |
45 |
2.68 |
2.22 |
9.487 |
1.616 |
T P |
1trs_A |
105 |
302 |
45 |
2.63 |
0.00 |
9.474 |
1.649 |
T P |
1d2k_A |
392 |
302 |
39 |
2.61 |
7.69 |
9.456 |
1.437 |
T P |
2j23_A |
115 |
302 |
40 |
2.46 |
2.50 |
9.454 |
1.560 |
T P |
3dyr_A |
111 |
302 |
44 |
2.63 |
4.55 |
9.453 |
1.613 |
T P |
1mek_A |
120 |
302 |
42 |
2.77 |
7.14 |
9.402 |
1.463 |
T P |
1nw2_A |
105 |
302 |
42 |
2.69 |
2.38 |
9.398 |
1.507 |
T P |
2dj3_A |
133 |
302 |
42 |
2.51 |
2.38 |
9.292 |
1.607 |
T P |
2h70_A |
107 |
302 |
41 |
2.67 |
9.76 |
9.277 |
1.481 |
T P |
2trx_A |
108 |
302 |
41 |
2.78 |
12.20 |
9.246 |
1.423 |
T P |
1tho_A |
109 |
302 |
41 |
2.72 |
2.44 |
9.244 |
1.454 |
T P |
1vrs_D |
118 |
302 |
40 |
2.67 |
2.50 |
9.191 |
1.446 |
T P |
1ep8_A |
112 |
302 |
40 |
2.52 |
5.00 |
9.182 |
1.528 |
T P |
2o7k_A |
103 |
302 |
38 |
2.54 |
2.63 |
9.106 |
1.442 |
T P |
2hsh_A |
105 |
302 |
40 |
2.61 |
5.00 |
9.066 |
1.476 |
T P |
3f9u_B |
148 |
302 |
41 |
2.84 |
7.32 |
9.057 |
1.397 |
T P |
1qgv_A |
130 |
302 |
41 |
2.52 |
9.76 |
9.032 |
1.563 |
T P |
2tir_A |
108 |
302 |
43 |
2.56 |
4.65 |
9.022 |
1.616 |
T P |
2eio_A |
107 |
302 |
40 |
2.77 |
5.00 |
9.010 |
1.394 |
T P |
1xwb_A |
106 |
302 |
42 |
2.54 |
11.90 |
8.970 |
1.588 |
T P |
1cqg_A |
105 |
302 |
41 |
2.62 |
2.44 |
8.938 |
1.508 |
T P |
1rqm_A |
105 |
302 |
38 |
2.23 |
5.26 |
8.913 |
1.633 |
T P |
1se1_B |
243 |
302 |
40 |
2.67 |
10.00 |
8.912 |
1.446 |
T P |
2vlv_B |
113 |
302 |
43 |
2.51 |
6.98 |
8.902 |
1.647 |
T P |
2h6y_A |
107 |
302 |
42 |
2.62 |
7.14 |
8.899 |
1.543 |
T P |
1m7t_A |
107 |
302 |
36 |
2.41 |
5.56 |
8.888 |
1.432 |
T P |
2ifq_B |
105 |
302 |
39 |
2.76 |
15.38 |
8.820 |
1.362 |
T P |
2h1a_B |
139 |
302 |
41 |
2.69 |
12.20 |
8.811 |
1.470 |
T P |
1t00_A |
112 |
302 |
42 |
2.76 |
2.38 |
8.798 |
1.471 |
T P |
2fd3_A |
108 |
302 |
41 |
2.75 |
2.44 |
8.786 |
1.439 |
T P |
2h71_A |
107 |
302 |
42 |
2.80 |
2.38 |
8.779 |
1.450 |
T P |
1sen_A |
134 |
302 |
41 |
2.88 |
7.32 |
8.733 |
1.376 |
T P |
3c73_B |
138 |
302 |
41 |
2.79 |
12.20 |
8.721 |
1.421 |
T P |
2cvk_A |
105 |
302 |
38 |
2.42 |
13.16 |
8.719 |
1.510 |
T P |
1o73_A |
144 |
302 |
35 |
2.40 |
14.29 |
8.709 |
1.401 |
T P |
2h1b_A |
138 |
302 |
40 |
2.67 |
12.50 |
8.704 |
1.446 |
T P |
2fch_D |
107 |
302 |
39 |
2.56 |
7.69 |
8.702 |
1.467 |
T P |
1zcp_A |
106 |
302 |
39 |
2.68 |
2.56 |
8.684 |
1.402 |
T P |
1nsw_A |
105 |
302 |
40 |
2.56 |
7.50 |
8.675 |
1.505 |
T P |
2h73_A |
108 |
302 |
42 |
2.89 |
9.52 |
8.645 |
1.403 |
T P |
2h19_A |
138 |
302 |
40 |
2.62 |
12.50 |
8.614 |
1.469 |
T P |
1txx_A |
108 |
302 |
38 |
2.54 |
5.26 |
8.566 |
1.439 |
T P |
2h74_A |
108 |
302 |
38 |
2.61 |
5.26 |
8.564 |
1.405 |
T P |
2fwh_A |
117 |
302 |
37 |
2.80 |
8.11 |
8.554 |
1.275 |
T P |
1aiu_A |
105 |
302 |
37 |
2.62 |
5.41 |
8.510 |
1.360 |
T P |
2dmm_A |
142 |
302 |
37 |
2.73 |
8.11 |
8.503 |
1.306 |
T P |
1xwa_A |
111 |
302 |
40 |
2.75 |
2.50 |
8.475 |
1.404 |
T P |
2h72_A |
107 |
302 |
37 |
2.91 |
2.70 |
8.455 |
1.230 |
T P |
2o8v_B |
108 |
302 |
38 |
2.61 |
2.63 |
8.447 |
1.404 |
T P |
1oaz_A |
115 |
302 |
41 |
2.66 |
2.44 |
8.410 |
1.485 |
T P |
2b1k_A |
149 |
302 |
40 |
2.67 |
10.00 |
8.369 |
1.442 |
T P |
2dj2_A |
120 |
302 |
42 |
2.91 |
7.14 |
8.358 |
1.396 |
T P |
2h76_A |
108 |
302 |
36 |
2.51 |
2.78 |
8.337 |
1.381 |
T P |
1keb_A |
108 |
302 |
37 |
2.63 |
5.41 |
8.300 |
1.356 |
T P |
1dby_A |
107 |
302 |
41 |
2.89 |
0.00 |
8.293 |
1.372 |
T P |
2eir_A |
107 |
302 |
39 |
2.55 |
10.26 |
8.273 |
1.470 |
T P |
1quw_A |
105 |
302 |
39 |
2.82 |
2.56 |
8.257 |
1.335 |
T P |
2i1u_A |
108 |
302 |
37 |
2.65 |
2.70 |
8.246 |
1.344 |
T P |
2oe3_A |
106 |
302 |
37 |
2.66 |
5.41 |
8.145 |
1.342 |
T P |
2yzu_A |
104 |
302 |
36 |
2.57 |
2.78 |
8.126 |
1.348 |
T P |
2h6z_A |
108 |
302 |
35 |
2.67 |
2.86 |
8.022 |
1.264 |
T P |
2gzy_A |
104 |
302 |
34 |
2.58 |
2.94 |
8.019 |
1.266 |
T P |
3c71_A |
140 |
302 |
40 |
2.96 |
2.50 |
8.015 |
1.308 |
T P |
1zzy_A |
106 |
302 |
36 |
2.66 |
2.78 |
7.971 |
1.305 |
T P |
2h1g_B |
137 |
302 |
37 |
2.76 |
5.41 |
7.933 |
1.292 |
T P |
1kng_A |
144 |
302 |
34 |
2.65 |
5.88 |
7.915 |
1.235 |
T P |
2h75_B |
108 |
302 |
38 |
2.68 |
13.16 |
7.849 |
1.366 |
T P |
2i4a_A |
107 |
302 |
34 |
2.85 |
11.76 |
7.779 |
1.154 |
T P |
2ppt_A |
149 |
302 |
38 |
2.74 |
7.89 |
7.756 |
1.339 |
T P |
2vim_A |
104 |
302 |
33 |
2.62 |
6.06 |
7.668 |
1.212 |
T P |
1f6m_C |
108 |
302 |
39 |
2.91 |
7.69 |
7.665 |
1.297 |
T P |
1st9_A |
137 |
302 |
35 |
2.78 |
11.43 |
7.634 |
1.217 |
T P |
1pqn_A |
127 |
302 |
29 |
2.52 |
0.00 |
6.273 |
1.105 |
T P |
1v98_A |
92 |
302 |
25 |
2.72 |
0.00 |
5.803 |
0.887 |
T P |
NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)
Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures",
Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374.
[MEDLINE]