LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_154.5wLII_11111_97
Total number of 3D structures: 21
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1t5e_A
231
231
218
0.58
21.56
93.970
32.277
T P
1vf7_E
252
231
223
1.22
21.08
92.813
16.891
T P
2f1m_C
247
231
200
1.52
17.00
82.819
12.331
T P
1jch_A
468
231
70
1.76
8.57
29.480
3.758
T P
2b5u_A
470
231
68
1.34
8.82
29.095
4.728
T P
2evb_A
74
231
67
1.36
26.87
27.992
4.587
T P
2ejm_A
99
231
68
1.80
26.47
27.860
3.573
T P
1z6h_A
72
231
67
1.55
22.39
27.582
4.060
T P
1dcz_A
77
231
67
1.60
25.37
27.539
3.946
T P
3bg5_A
1137
231
67
1.58
32.84
27.163
3.984
T P
3bg3_A
679
231
67
1.65
23.88
26.975
3.840
T P
1o78_A
84
231
65
2.00
24.62
25.382
3.098
T P
2qf7_A
1075
231
62
1.46
22.58
25.268
3.964
T P
1lab_A
80
231
63
1.95
19.05
22.139
3.078
T P
2i1j_A
481
231
61
2.22
6.56
20.055
2.634
T P
1krh_A
337
231
65
2.29
9.23
19.077
2.718
T P
1wp1_A
456
231
53
2.62
7.55
16.092
1.947
T P
3cs0_A
392
231
49
2.36
16.33
15.026
1.995
T P
2jku_A
35
231
35
1.36
25.71
14.565
2.395
T P
1ky9_B
396
231
50
2.60
6.00
14.355
1.852
T P
1cii_A
602
231
11
2.49
0.00
3.650
0.425
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]