LGA
Sequence Independent Analysis (LGA)
Frame of reference: Cat.Q2246_545_154.5wLII_11111_97
Total number of 3D structures: 21
LGA calculations using distance cutoff DIST: 4.0 A
Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY
Structure Deviation Summary
Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)
Structures ordered by LGA_S - score
Structure |
NS |
NT |
N(dist=4.0) |
RMSD(N) |
Seq_ID(N) |
LGA_S |
LGA_Q |
PLOTS |
1t5e_A |
231 |
231 |
218 |
0.58 |
21.56 |
93.970 |
32.277 |
T P |
1vf7_E |
252 |
231 |
223 |
1.22 |
21.08 |
92.813 |
16.891 |
T P |
2f1m_C |
247 |
231 |
200 |
1.52 |
17.00 |
82.819 |
12.331 |
T P |
1jch_A |
468 |
231 |
70 |
1.76 |
8.57 |
29.480 |
3.758 |
T P |
2b5u_A |
470 |
231 |
68 |
1.34 |
8.82 |
29.095 |
4.728 |
T P |
2evb_A |
74 |
231 |
67 |
1.36 |
26.87 |
27.992 |
4.587 |
T P |
2ejm_A |
99 |
231 |
68 |
1.80 |
26.47 |
27.860 |
3.573 |
T P |
1z6h_A |
72 |
231 |
67 |
1.55 |
22.39 |
27.582 |
4.060 |
T P |
1dcz_A |
77 |
231 |
67 |
1.60 |
25.37 |
27.539 |
3.946 |
T P |
3bg5_A |
1137 |
231 |
67 |
1.58 |
32.84 |
27.163 |
3.984 |
T P |
3bg3_A |
679 |
231 |
67 |
1.65 |
23.88 |
26.975 |
3.840 |
T P |
1o78_A |
84 |
231 |
65 |
2.00 |
24.62 |
25.382 |
3.098 |
T P |
2qf7_A |
1075 |
231 |
62 |
1.46 |
22.58 |
25.268 |
3.964 |
T P |
1lab_A |
80 |
231 |
63 |
1.95 |
19.05 |
22.139 |
3.078 |
T P |
2i1j_A |
481 |
231 |
61 |
2.22 |
6.56 |
20.055 |
2.634 |
T P |
1krh_A |
337 |
231 |
65 |
2.29 |
9.23 |
19.077 |
2.718 |
T P |
1wp1_A |
456 |
231 |
53 |
2.62 |
7.55 |
16.092 |
1.947 |
T P |
3cs0_A |
392 |
231 |
49 |
2.36 |
16.33 |
15.026 |
1.995 |
T P |
2jku_A |
35 |
231 |
35 |
1.36 |
25.71 |
14.565 |
2.395 |
T P |
1ky9_B |
396 |
231 |
50 |
2.60 |
6.00 |
14.355 |
1.852 |
T P |
1cii_A |
602 |
231 |
11 |
2.49 |
0.00 |
3.650 |
0.425 |
T P |
NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)
Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures",
Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374.
[MEDLINE]