LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_156.5wLII_11111_110
Total number of 3D structures: 84
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
2avd_A
219
210
203
0.48
23.65
96.230
34.737
T P
2hnk_B
232
210
205
1.46
20.00
90.988
13.131
T P
3c3y_A
225
210
201
1.41
19.90
90.351
13.328
T P
3cbg_A
218
210
199
1.36
19.10
90.115
13.671
T P
1sui_A
227
210
198
1.49
21.21
87.859
12.489
T P
3dr5_A
216
210
196
1.88
17.35
81.812
9.909
T P
3duw_A
220
210
191
1.83
18.32
81.732
9.886
T P
3c3p_A
198
210
178
1.83
19.10
76.293
9.201
T P
2cl5_A
214
210
164
1.86
15.85
68.854
8.383
T P
3bwm_A
214
210
164
1.88
12.80
68.849
8.282
T P
3bwy_A
214
210
163
1.90
11.66
68.248
8.163
T P
1o54_A
265
210
157
2.00
13.38
64.630
7.492
T P
2yvl_A
247
210
149
1.88
14.77
62.864
7.536
T P
2gpy_B
192
210
168
2.10
21.43
62.606
7.630
T P
2zlb_A
212
210
161
2.01
15.53
60.490
7.641
T P
2pwy_A
251
210
149
1.95
12.75
59.528
7.257
T P
1i9g_A
264
210
153
1.94
16.34
59.249
7.502
T P
2as0_A
396
210
155
1.94
11.61
58.598
7.580
T P
1l3i_A
186
210
151
2.06
15.89
58.101
6.976
T P
2b25_A
254
210
143
1.97
12.59
53.848
6.892
T P
3g5l_A
222
210
144
2.17
6.94
52.412
6.338
T P
3e7p_A
253
210
149
2.16
13.42
50.884
6.606
T P
3dli_A
221
210
139
2.01
9.35
49.047
6.581
T P
1wzn_A
244
210
142
2.25
14.79
48.926
6.042
T P
2p8j_B
207
210
148
2.24
10.14
48.824
6.319
T P
3dtn_A
220
210
139
2.23
11.51
48.181
5.964
T P
1y8c_A
246
210
142
2.26
14.08
47.858
6.015
T P
2o57_A
282
210
147
2.32
12.24
47.819
6.073
T P
2yqz_A
261
210
140
2.27
11.43
47.176
5.901
T P
3bkw_A
219
210
136
2.13
15.44
47.080
6.105
T P
1kph_B
285
210
137
2.12
9.49
46.812
6.159
T P
3bus_A
251
210
146
2.29
13.70
46.635
6.114
T P
1xxl_A
234
210
142
2.27
9.15
46.545
5.989
T P
1vl5_A
231
210
138
2.14
9.42
46.444
6.163
T P
1p91_A
268
210
128
2.06
14.06
46.382
5.924
T P
1kpi_A
291
210
138
2.27
7.25
46.015
5.817
T P
2fk8_A
281
210
137
2.18
8.76
45.745
6.008
T P
1kpg_A
285
210
136
2.09
8.82
45.651
6.204
T P
1l1e_A
272
210
133
2.13
9.02
45.447
5.971
T P
1tpy_A
285
210
138
2.18
10.87
45.353
6.046
T P
1i1n_A
224
210
132
2.29
15.15
45.240
5.512
T P
1ve3_B
226
210
134
2.25
11.19
44.834
5.711
T P
3e23_A
198
210
140
2.26
10.71
44.791
5.941
T P
3bkx_A
274
210
137
2.41
9.49
44.681
5.458
T P
3dp7_A
351
210
137
2.40
11.68
44.665
5.471
T P
3d2l_C
242
210
135
2.25
11.11
44.663
5.755
T P
3f4k_A
254
210
137
2.27
12.41
44.607
5.781
T P
2gh1_A
281
210
136
2.27
11.76
44.546
5.743
T P
1dl5_A
317
210
127
2.28
16.54
44.441
5.340
T P
2yxe_A
214
210
127
2.23
15.75
44.355
5.441
T P
1vbf_B
226
210
128
2.33
14.06
44.129
5.270
T P
1sqg_A
424
210
141
2.27
16.31
44.121
5.942
T P
3bxo_A
236
210
136
2.28
16.18
44.031
5.706
T P
1d2g_A
292
210
142
2.52
15.49
44.030
5.412
T P
1jg1_A
215
210
122
2.05
10.66
43.834
5.685
T P
1r18_A
223
210
132
2.36
14.39
43.474
5.372
T P
1xva_A
292
210
142
2.51
16.20
43.242
5.447
T P
2pbf_A
218
210
130
2.33
16.92
43.204
5.347
T P
1r8x_B
284
210
140
2.48
17.14
42.870
5.417
T P
1nkv_C
249
210
125
2.18
12.80
42.737
5.476
T P
1ri5_A
252
210
136
2.37
11.03
42.600
5.511
T P
2avn_A
247
210
135
2.34
9.63
42.192
5.541
T P
2azt_B
277
210
140
2.53
15.71
42.156
5.318
T P
1r74_B
279
210
133
2.44
18.05
41.892
5.233
T P
3e8s_A
220
210
127
2.24
14.17
41.805
5.433
T P
1g6q_1
328
210
111
2.12
11.71
41.789
5.002
T P
2gs9_A
211
210
125
2.15
13.60
41.532
5.545
T P
3dlc_A
219
210
129
2.39
13.95
41.091
5.190
T P
1adm_A
415
210
132
2.47
12.88
41.002
5.145
T P
1aqj_B
383
210
131
2.39
17.56
40.603
5.267
T P
3dh0_B
190
210
125
2.23
9.60
40.559
5.369
T P
2ih2_A
393
210
126
2.30
18.25
40.219
5.254
T P
1vlm_A
207
210
126
2.26
10.32
40.051
5.330
T P
1qzz_A
340
210
127
2.40
14.96
40.045
5.072
T P
3ccf_B
242
210
128
2.30
10.94
40.023
5.344
T P
3b3f_A
337
210
110
2.32
13.64
38.555
4.542
T P
1or8_A
313
210
108
2.23
15.74
38.375
4.630
T P
2v74_D
332
210
108
2.21
12.96
38.096
4.685
T P
2fyt_A
311
210
105
2.17
11.43
37.662
4.619
T P
1f3l_A
321
210
104
2.17
13.46
37.647
4.575
T P
1orh_A
318
210
106
2.21
16.04
37.061
4.593
T P
1ori_A
316
210
106
2.23
11.32
36.955
4.546
T P
3b3j_A
332
210
107
2.38
9.35
34.800
4.315
T P
3dnx_A
146
210
54
2.78
9.26
16.342
1.872
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]