LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_169.5wLII_11172_58
Total number of 3D structures: 59
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
3bk7_A
593
97
93
1.01
23.66
93.403
8.397
T P
2c3m_A
1231
97
63
1.81
25.40
60.243
3.298
T P
2c42_A
1231
97
63
1.85
25.40
60.030
3.229
T P
3c8y_A
574
97
64
1.97
23.44
58.207
3.086
T P
1jb0_C
80
97
61
1.82
16.39
57.574
3.183
T P
1jnr_B
149
97
61
1.87
27.87
57.484
3.098
T P
2vkr_A
103
97
59
1.66
25.42
56.990
3.351
T P
1h7x_B
1019
97
59
1.85
25.42
56.634
3.029
T P
1xer_A
102
97
59
1.74
27.12
56.624
3.200
T P
1gte_D
1014
97
59
1.85
25.42
56.507
3.032
T P
3c7b_B
363
97
58
1.84
17.24
55.024
2.984
T P
2v4j_B
380
97
57
1.87
22.81
53.327
2.897
T P
1hfe_L
396
97
58
2.01
32.76
52.588
2.753
T P
1bqx_A
77
97
58
1.98
24.14
52.393
2.788
T P
7fd1_A
106
97
56
1.83
23.21
52.348
2.900
T P
1b0t_A
106
97
56
1.83
23.21
52.339
2.895
T P
1fdd_A
106
97
56
1.88
21.43
52.249
2.825
T P
1frk_A
106
97
56
1.89
21.43
52.062
2.811
T P
1fri_A
106
97
55
1.81
21.82
51.605
2.874
T P
1pc5_A
106
97
58
2.03
20.69
51.487
2.720
T P
1b0v_A
106
97
55
1.87
21.82
51.433
2.791
T P
1dur_A
55
97
53
1.55
24.53
51.356
3.210
T P
1bc6_A
77
97
56
1.90
21.43
50.921
2.796
T P
1fdx
54
97
52
1.51
25.00
50.678
3.237
T P
1fca_A
55
97
53
1.57
22.64
50.525
3.168
T P
1g3o_A
106
97
57
2.00
21.05
50.518
2.710
T P
1f5c_A
106
97
58
2.05
20.69
50.505
2.697
T P
1frj_A
106
97
58
2.07
22.41
50.488
2.676
T P
2v2k_A
104
97
55
1.91
23.64
50.416
2.741
T P
2fdn_A
55
97
53
1.60
22.64
50.398
3.110
T P
1a6l_A
106
97
57
1.99
21.05
50.321
2.721
T P
1d3w_A
106
97
58
2.04
20.69
50.247
2.709
T P
1ff2_A
106
97
57
2.03
19.30
49.894
2.672
T P
1pc4_A
106
97
54
1.86
20.37
49.860
2.760
T P
2fug_9
154
97
64
2.18
23.44
49.807
2.809
T P
1fd2_A
106
97
58
2.20
18.97
49.672
2.524
T P
1f5b_A
106
97
57
2.04
21.05
49.599
2.662
T P
1gao_A
106
97
54
1.88
20.37
49.586
2.723
T P
1ti6_B
274
97
64
2.24
12.50
49.444
2.731
T P
1frh_A
106
97
54
1.96
22.22
49.359
2.617
T P
1h98_A
77
97
54
1.90
24.07
49.341
2.705
T P
1frl_A
106
97
55
1.93
21.82
49.331
2.705
T P
1frm_A
106
97
54
1.88
20.37
49.329
2.728
T P
1clf_A
55
97
52
1.63
23.08
49.294
3.004
T P
1ftc_A
106
97
55
1.98
21.82
49.098
2.640
T P
1g6b_A
106
97
55
2.00
23.64
49.048
2.618
T P
1frx_A
106
97
56
2.07
19.64
48.319
2.585
T P
2fd2_A
106
97
54
1.99
22.22
48.289
2.589
T P
1q16_B
509
97
66
2.24
9.09
48.104
2.817
T P
1y4z_B
509
97
65
2.21
7.69
47.535
2.816
T P
2ivf_B
337
97
63
2.29
17.46
45.947
2.639
T P
2o01_C
80
97
56
2.17
14.29
42.737
2.472
T P
1e08_A
371
97
51
2.36
31.37
40.129
2.070
T P
3cf4_A
766
97
48
2.06
31.25
38.638
2.222
T P
2vpz_B
193
97
41
2.04
17.07
36.554
1.916
T P
1k0t_A
80
97
52
2.34
13.46
36.442
2.128
T P
1kqf_B
289
97
40
2.03
17.50
35.080
1.880
T P
1h0h_B
214
97
38
1.97
26.32
34.309
1.835
T P
1yqt_A
515
97
38
2.84
7.89
25.187
1.294
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]