LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_184.5wLII_11181_58
Total number of 3D structures: 59
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1u0b_B
461
232
163
2.11
12.88
57.900
7.380
T P
3c8z_B
401
232
157
2.29
10.83
51.443
6.561
T P
1gax_A
862
232
159
2.28
6.29
48.714
6.672
T P
1wz2_A
948
232
163
2.37
6.13
47.222
6.599
T P
1wkb_A
791
232
163
2.35
5.52
47.021
6.643
T P
1ffy_A
917
232
149
2.28
6.71
44.543
6.271
T P
1qqt_A
546
232
151
2.48
3.97
43.093
5.855
T P
1f4l_A
545
232
147
2.49
4.08
41.616
5.678
T P
1pfv_A
547
232
146
2.48
3.42
41.178
5.666
T P
2ct8_A
465
232
146
2.54
10.96
40.197
5.534
T P
1ile_A
821
232
143
2.46
4.90
39.845
5.586
T P
2d54_A
500
232
142
2.54
8.45
39.665
5.386
T P
1a8h_A
500
232
142
2.56
10.56
39.242
5.341
T P
2d5b_A
500
232
142
2.63
9.86
38.893
5.209
T P
1f7u_A
606
232
107
2.55
9.35
31.747
4.030
T P
1iq0_A
588
232
109
2.58
6.42
31.207
4.064
T P
3fnr_A
449
232
108
2.52
6.48
30.341
4.127
T P
1irx_B
508
232
95
2.41
11.58
29.128
3.786
T P
2q1i_A
308
232
65
2.38
7.69
19.313
2.626
T P
1m9s_A
523
232
56
2.68
7.14
15.129
2.014
T P
3cvr_A
477
232
49
2.72
6.12
14.114
1.738
T P
3e6j_A
219
232
45
2.37
2.22
13.586
1.825
T P
2z66_A
306
232
48
2.67
4.17
13.385
1.730
T P
2z63_A
570
232
50
2.77
8.00
13.298
1.741
T P
2omw_A
461
232
47
2.71
10.64
13.164
1.670
T P
2omt_A
461
232
45
2.62
8.89
13.031
1.652
T P
2omy_A
460
232
45
2.77
8.89
12.940
1.570
T P
2z64_A
599
232
43
2.69
4.65
12.841
1.540
T P
1h6u_A
308
232
43
2.69
6.98
12.569
1.541
T P
3bz5_A
450
232
41
2.72
2.44
12.451
1.453
T P
1ogq_A
313
232
41
2.37
0.00
12.257
1.663
T P
1gwb_B
276
232
46
2.74
4.35
12.219
1.620
T P
1jl5_A
353
232
41
2.73
9.76
12.116
1.447
T P
2ft3_F
305
232
40
2.59
5.00
11.931
1.486
T P
1sq0_B
265
232
42
2.73
9.52
11.913
1.484
T P
1ziw_A
629
232
45
2.71
6.67
11.850
1.604
T P
1p8v_A
277
232
40
2.59
15.00
11.848
1.488
T P
2z62_A
276
232
43
2.76
11.63
11.694
1.505
T P
1xec_A
305
232
37
2.49
5.41
11.693
1.430
T P
1p9a_G
266
232
41
2.76
7.32
11.664
1.433
T P
3cig_A
663
232
39
2.54
7.69
11.564
1.478
T P
2id5_B
473
232
39
2.71
7.69
11.472
1.389
T P
1p8t_A
285
232
42
2.88
9.52
11.438
1.411
T P
2o6s_A
208
232
42
2.88
7.14
11.385
1.409
T P
2omx_A
462
232
35
2.64
8.57
11.314
1.276
T P
1o6v_A
462
232
37
2.70
2.70
11.140
1.320
T P
1u0n_D
265
232
39
3.12
10.26
11.130
1.210
T P
3fxi_A
601
232
36
2.76
0.00
11.045
1.257
T P
1m0z_B
266
232
40
2.74
7.50
11.043
1.407
T P
2omu_A
462
232
38
2.70
13.16
10.896
1.356
T P
2a0z_A
671
232
39
2.66
0.00
10.871
1.412
T P
2omz_A
465
232
35
2.67
2.86
10.796
1.262
T P
1w8a_A
189
232
41
2.80
12.20
10.641
1.412
T P
1ozn_A
284
232
36
2.69
5.56
10.435
1.291
T P
1ook_G
282
232
35
2.69
5.71
10.316
1.255
T P
2v70_A
210
232
34
2.66
2.94
10.305
1.231
T P
1xku_A
305
232
36
2.75
5.56
10.029
1.262
T P
2o6q_A
270
232
34
2.59
2.94
9.896
1.266
T P
1m10_B
267
232
29
2.77
3.45
8.948
1.012
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]