LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_188.5wLII_11181_70
Total number of 3D structures: 56
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
2gj3_A
119
97
83
1.11
20.48
83.709
6.863
T P
2z6c_A
121
97
80
1.71
16.25
75.561
4.428
T P
2v1b_A
144
97
80
1.65
12.50
75.457
4.578
T P
1n9l_A
109
97
80
1.69
16.25
75.217
4.467
T P
1jnu_A
104
97
79
1.79
12.66
73.784
4.190
T P
2z6d_A
118
97
80
1.73
16.25
69.283
4.368
T P
2v0u_A
146
97
80
1.66
12.50
67.254
4.548
T P
2pr5_A
127
97
75
1.69
16.00
66.721
4.196
T P
2pd8_A
148
97
75
1.82
17.33
66.694
3.907
T P
3d72_A
149
97
76
1.79
17.11
65.948
4.016
T P
2pdr_A
147
97
76
1.83
17.11
65.654
3.947
T P
1bv6_A
119
97
64
1.88
14.06
52.411
3.224
T P
1y28_A
119
97
66
2.17
13.64
51.625
2.913
T P
1lsw_A
117
97
63
2.01
12.70
51.424
2.990
T P
1xj3_A
116
97
63
2.16
14.29
51.340
2.791
T P
2vv6_D
107
97
64
1.94
14.06
51.267
3.134
T P
2cmn_A
117
97
65
2.15
13.85
51.109
2.894
T P
1s67_L
119
97
67
2.09
16.42
50.409
3.062
T P
1d06_A
130
97
62
1.79
11.29
50.369
3.273
T P
1v9y_A
103
97
63
2.29
15.87
47.819
2.640
T P
3equ_A
429
97
45
2.34
4.44
36.010
1.844
T P
1k25_B
575
97
44
2.37
11.36
34.755
1.780
T P
3eqv_A
443
97
42
2.47
7.14
33.860
1.633
T P
1pmd_A
675
97
41
2.10
7.32
33.834
1.865
T P
1pyy_A
607
97
43
2.36
9.30
33.548
1.751
T P
1rp5_A
687
97
41
2.36
7.32
33.539
1.666
T P
2waf_A
619
97
43
2.37
6.98
33.417
1.744
T P
1e3u_D
242
97
49
2.69
8.16
33.004
1.759
T P
2c6w_B
384
97
43
2.36
11.63
32.614
1.751
T P
1qme_A
558
97
41
2.24
9.76
32.493
1.749
T P
2jc7_A
244
97
42
2.26
7.14
32.310
1.776
T P
2uwy_A
469
97
41
2.26
9.76
31.913
1.737
T P
1h8z_A
237
97
43
2.52
9.30
31.660
1.641
T P
2uwx_A
468
97
41
2.24
9.76
31.563
1.749
T P
1e3u_A
243
97
45
2.54
11.11
31.448
1.702
T P
1mwr_B
629
97
46
2.58
6.52
31.290
1.718
T P
2wad_C
607
97
44
2.63
2.27
30.978
1.614
T P
1k6r_A
246
97
41
2.55
12.20
30.950
1.548
T P
2zc3_E
367
97
44
2.43
4.55
30.906
1.742
T P
1mwx_A
635
97
42
2.68
2.38
30.737
1.511
T P
1vqq_A
635
97
42
2.68
2.38
30.737
1.511
T P
1nrf_A
246
97
44
2.78
11.36
30.664
1.530
T P
2bg1_A
455
97
43
2.66
4.65
30.264
1.560
T P
2rl3_B
248
97
40
2.53
12.50
30.091
1.519
T P
2hpb_B
247
97
41
2.68
12.20
29.501
1.474
T P
2iwb_A
246
97
41
2.61
12.20
29.344
1.514
T P
1fof_A
246
97
40
2.33
17.50
29.106
1.643
T P
2zc6_B
384
97
40
2.98
7.50
28.622
1.300
T P
2fff_B
453
97
41
2.69
4.88
28.610
1.471
T P
2hp5_A
246
97
39
2.72
10.26
28.484
1.383
T P
1mws_A
633
97
44
2.90
6.82
28.468
1.468
T P
2c5w_B
385
97
38
2.56
5.26
27.968
1.430
T P
2wae_A
607
97
38
2.59
7.89
25.544
1.410
T P
2jch_A
461
97
32
2.56
6.25
24.080
1.203
T P
2bis_A
440
97
32
2.83
3.12
21.575
1.094
T P
3c4s_A
57
97
28
2.64
0.00
19.024
1.021
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]