LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_19.5wLII_10580_1
Total number of 3D structures: 71
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1jk3_A
158
81
81
0.69
17.28
99.172
10.249
T P
1y93_A
158
81
81
0.79
16.05
98.711
9.051
T P
3f17_A
158
81
81
0.82
16.05
98.560
8.813
T P
1os9_A
165
81
81
0.84
16.05
98.240
8.659
T P
1utt_A
159
81
81
0.96
16.05
98.191
7.658
T P
2w0d_C
159
81
81
0.93
17.28
98.094
7.893
T P
1jiz_A
166
81
81
0.96
16.05
97.986
7.655
T P
3ba0_A
365
81
81
1.07
16.05
97.807
6.909
T P
1ros_A
159
81
81
1.00
16.05
97.347
7.349
T P
2poj_A
164
81
80
1.20
17.50
95.609
6.174
T P
2z2d_A
158
81
75
1.82
14.67
85.675
3.908
T P
2k2g_A
165
81
77
2.22
15.58
77.956
3.325
T P
2k9c_A
152
81
60
2.48
13.33
48.834
2.329
T P
2csd_A
516
81
45
2.28
11.11
37.953
1.893
T P
2uxu_A
206
81
42
2.53
4.76
37.461
1.595
T P
1kvs_A
338
81
38
2.19
2.63
36.876
1.658
T P
1t56_A
193
81
42
2.52
7.14
35.588
1.602
T P
1kvu_A
338
81
35
2.19
11.43
35.512
1.528
T P
1kvr_A
338
81
35
2.13
8.57
35.053
1.570
T P
1y9q_A
178
81
42
2.54
4.76
34.972
1.593
T P
1a9z_A
338
81
35
2.17
2.86
34.447
1.541
T P
2ras_B
204
81
42
2.68
2.38
33.708
1.510
T P
2a6h_F
345
81
37
2.24
10.81
33.666
1.580
T P
3fks_F
471
81
42
2.71
2.38
33.253
1.492
T P
2hld_D
470
81
39
2.98
2.56
32.409
1.267
T P
2qfc_A
284
81
36
2.79
13.89
31.829
1.247
T P
3dxj_F
349
81
35
2.49
5.71
31.665
1.354
T P
2r0q_C
193
81
36
2.60
5.56
31.427
1.334
T P
1u9o_A
194
81
32
2.30
9.38
30.395
1.334
T P
1zvv_A
332
81
35
2.73
0.00
29.771
1.237
T P
2a6c_A
76
81
27
2.04
7.41
29.676
1.260
T P
2eby_A
102
81
31
2.36
0.00
29.440
1.262
T P
1udb_A
338
81
35
2.64
8.57
28.779
1.279
T P
3cec_A
91
81
28
2.16
7.14
28.436
1.240
T P
1kvt_A
338
81
36
2.76
8.33
28.284
1.257
T P
1udc_A
338
81
32
2.70
0.00
27.289
1.144
T P
3clc_B
77
81
27
2.06
3.70
27.086
1.251
T P
3bdn_A
234
81
31
2.58
9.68
26.735
1.157
T P
1nr3_A
122
81
32
3.01
3.12
26.552
1.029
T P
3c64_A
152
81
31
2.84
6.45
26.441
1.054
T P
1a9y_A
338
81
29
2.43
6.90
26.258
1.147
T P
1ic8_B
173
81
28
2.36
7.14
26.236
1.137
T P
2ef8_A
84
81
28
2.17
7.14
25.851
1.231
T P
3dnv_B
71
81
29
2.68
0.00
25.849
1.044
T P
2bnm_A
194
81
31
2.78
9.68
25.777
1.075
T P
2b5a_A
77
81
32
2.71
6.25
25.589
1.140
T P
3f6w_A
82
81
32
2.74
3.12
25.199
1.127
T P
1kvq_A
338
81
29
2.70
10.34
25.043
1.035
T P
3eus_A
85
81
22
1.99
0.00
24.418
1.053
T P
2ewt_A
71
81
31
2.72
0.00
24.341
1.100
T P
2r63_A
63
81
29
2.90
0.00
23.933
0.967
T P
1utx_A
66
81
28
2.46
0.00
23.718
1.092
T P
1r63_A
63
81
23
2.25
0.00
23.369
0.979
T P
3bs3_A
62
81
27
2.51
3.70
23.128
1.034
T P
1lrk_A
338
81
28
2.91
7.14
23.123
0.929
T P
2ofy_A
82
81
27
2.64
3.70
22.625
0.984
T P
1r69_A
63
81
27
2.49
7.41
22.486
1.041
T P
2r1j_L
66
81
28
2.62
0.00
22.410
1.030
T P
1adr_A
76
81
26
2.65
0.00
21.921
0.945
T P
1sq8_A
64
81
27
2.93
0.00
21.735
0.891
T P
1b0n_A
103
81
24
2.64
4.17
21.735
0.877
T P
1y7y_A
69
81
27
2.74
0.00
21.715
0.951
T P
2k9q_A
77
81
23
2.54
4.35
21.250
0.870
T P
1lli_B
92
81
26
2.79
23.08
21.135
0.901
T P
1x57_A
91
81
25
2.87
12.00
21.023
0.841
T P
2csb_A
517
81
24
2.87
0.00
20.711
0.808
T P
2cro_A
65
81
24
2.59
4.17
20.415
0.891
T P
3f52_E
78
81
26
2.98
0.00
20.245
0.845
T P
2h8r_A
176
81
24
2.58
20.83
20.061
0.897
T P
3b7h_A
76
81
22
2.79
9.09
18.389
0.762
T P
2jvl_A
107
81
21
2.92
0.00
16.808
0.695
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]