LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_190.5wLII_11181_77
Total number of 3D structures: 63
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
2vqa_A
356
205
187
1.68
20.32
83.661
10.525
T P
2uy8_A
377
205
182
2.02
15.38
66.339
8.596
T P
2uy9_A
377
205
185
2.08
16.22
66.029
8.481
T P
2v09_A
377
205
185
2.11
16.22
65.798
8.358
T P
2uya_A
375
205
183
2.08
15.85
65.706
8.406
T P
2uyb_A
377
205
183
2.07
15.85
65.674
8.416
T P
1l3j_A
372
205
182
2.08
15.93
65.657
8.345
T P
1j58_A
372
205
181
2.07
16.02
65.167
8.347
T P
1uij_A
377
205
143
2.23
5.59
52.642
6.143
T P
1sef_A
250
205
119
1.81
5.88
46.179
6.241
T P
1sfn_A
245
205
123
2.17
12.20
45.984
5.430
T P
1ipk_C
379
205
144
2.46
6.25
45.589
5.635
T P
2phd_D
352
205
113
2.08
10.62
44.219
5.182
T P
2h0v_A
335
205
119
2.27
14.29
43.985
5.018
T P
1ipj_C
368
205
141
2.43
4.96
43.841
5.570
T P
1y3t_A
330
205
117
2.22
12.82
43.072
5.048
T P
1rc6_A
242
205
112
1.98
9.82
42.792
5.390
T P
3bu7_B
358
205
114
2.17
11.40
42.488
5.016
T P
2p17_A
249
205
115
2.03
12.17
42.101
5.397
T P
1lr5_A
160
205
91
1.74
16.48
41.964
4.938
T P
2d40_A
289
205
114
2.31
7.02
41.873
4.736
T P
1o5n_A
114
205
87
1.60
16.09
40.917
5.120
T P
2ete_A
201
205
91
1.77
19.78
40.900
4.860
T P
1fi2_A
201
205
89
1.68
20.22
40.899
4.999
T P
1o4t_A
115
205
89
1.64
15.73
40.785
5.128
T P
2et7_A
201
205
90
1.75
21.11
40.679
4.866
T P
2q1z_B
185
205
98
2.06
20.41
39.767
4.529
T P
2b8m_A
109
205
86
1.61
10.47
39.709
5.024
T P
1x7n_A
189
205
91
1.80
15.38
39.694
4.796
T P
1plz_A
187
205
91
1.81
15.38
39.392
4.772
T P
1qxr_A
187
205
90
1.77
15.56
39.373
4.819
T P
1x82_A
190
205
91
1.82
15.38
39.271
4.748
T P
1j3q_A
187
205
89
1.73
15.73
39.107
4.868
T P
3bal_A
149
205
87
1.73
18.39
39.068
4.749
T P
3cew_A
118
205
85
1.58
10.59
39.054
5.049
T P
1yhf_A
114
205
84
1.69
11.90
38.922
4.703
T P
2gc1_A
188
205
89
1.83
14.61
38.744
4.609
T P
2f4p_A
134
205
82
1.53
18.29
38.551
5.045
T P
2o1q_A
144
205
88
1.90
14.77
38.385
4.400
T P
2pfw_A
112
205
85
1.69
14.12
38.179
4.760
T P
2ilb_A
114
205
83
1.77
15.66
37.970
4.427
T P
1tq5_A
234
205
103
2.30
3.88
36.912
4.288
T P
2ozj_A
110
205
80
1.70
16.25
36.902
4.449
T P
1sq4_A
270
205
114
2.44
12.28
36.363
4.489
T P
3d82_A
102
205
81
1.82
20.99
36.190
4.216
T P
2z2s_B
182
205
93
2.13
21.51
36.146
4.178
T P
3ebr_A
157
205
90
2.11
14.44
36.099
4.069
T P
2gu9_A
111
205
79
1.73
12.66
35.958
4.318
T P
3fjs_C
107
205
77
1.58
18.18
35.871
4.590
T P
2bnm_A
194
205
85
1.79
14.12
35.820
4.488
T P
3cjx_A
162
205
85
1.94
15.29
35.414
4.170
T P
2q30_A
106
205
80
1.88
20.00
34.912
4.043
T P
1j1l_A
288
205
104
2.29
6.73
34.790
4.344
T P
2qnk_A
286
205
102
2.66
8.82
34.591
3.699
T P
2yu2_A
387
205
75
1.57
10.67
34.165
4.487
T P
2i45_D
99
205
79
1.87
18.99
34.128
4.005
T P
1yfu_A
174
205
78
1.95
12.82
33.296
3.811
T P
2qdr_A
285
205
92
2.33
16.30
32.686
3.787
T P
1zvf_A
176
205
78
2.12
12.82
31.755
3.508
T P
2fqp_A
95
205
75
1.94
13.33
28.378
3.685
T P
2o8q_A
122
205
70
1.95
20.00
27.317
3.415
T P
1vr3_A
179
205
61
1.86
19.67
26.973
3.117
T P
1m4o_A
179
205
60
2.42
13.33
23.539
2.384
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]