LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_197.5wLII_11184_13
Total number of 3D structures: 74
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1r62_A
136
129
85
1.86
16.47
61.100
4.331
T P
3d36_B
221
129
86
1.86
6.98
56.790
4.384
T P
3cgz_A
143
129
79
1.93
6.33
53.565
3.889
T P
1gkz_A
316
129
88
2.06
4.55
52.571
4.081
T P
2e0a_A
358
129
84
1.87
9.52
52.238
4.271
T P
1y8o_A
374
129
87
1.92
8.05
52.162
4.303
T P
2btz_A
357
129
84
1.83
9.52
51.748
4.342
T P
2zkj_B
359
129
83
1.81
7.23
51.399
4.339
T P
2q8g_A
368
129
82
1.89
6.10
51.282
4.111
T P
2c2a_A
240
129
82
1.76
7.32
50.990
4.416
T P
3crk_A
370
129
85
1.89
9.41
50.240
4.280
T P
1i58_A
189
129
87
1.99
5.75
49.713
4.161
T P
1b3q_B
370
129
85
2.02
4.71
48.600
4.002
T P
2ch4_A
320
129
85
2.07
4.71
48.327
3.916
T P
1til_A
141
129
83
2.21
4.82
48.067
3.589
T P
1l0o_A
141
129
80
1.99
5.00
47.700
3.823
T P
1i5d_A
190
129
85
2.18
4.71
47.626
3.726
T P
1tid_A
136
129
78
1.93
5.13
47.271
3.847
T P
1id0_A
146
129
77
1.81
5.19
46.796
4.035
T P
1ysr_A
137
129
79
2.09
11.39
46.083
3.608
T P
1z5b_A
466
129
75
2.00
5.33
45.422
3.566
T P
1pvg_A
378
129
73
1.89
4.11
45.290
3.668
T P
1z59_A
462
129
77
2.12
5.19
45.254
3.463
T P
1th8_A
132
129
77
2.02
6.49
45.001
3.627
T P
2q2e_B
581
129
74
1.91
9.46
44.726
3.682
T P
2zbk_B
506
129
76
1.95
9.21
44.623
3.700
T P
1ei1_A
391
129
74
1.93
5.41
44.591
3.648
T P
1mx0_C
466
129
75
2.00
5.33
44.382
3.573
T P
1mu5_A
460
129
75
2.08
5.33
43.660
3.446
T P
1kij_A
384
129
71
1.95
12.68
43.490
3.459
T P
1bxd_A
161
129
76
2.19
9.21
42.005
3.325
T P
1aj6_A
194
129
70
2.03
5.71
41.575
3.282
T P
2c11_A
670
129
51
2.48
9.80
27.155
1.980
T P
2cw7_A
537
129
48
2.71
4.17
25.196
1.708
T P
2cw8_A
537
129
44
2.60
6.82
24.062
1.631
T P
1v4y_A
474
129
45
2.69
6.67
23.148
1.614
T P
1ejx_C
555
129
43
2.63
2.33
23.000
1.578
T P
2gok_A
404
129
44
2.63
4.55
22.977
1.614
T P
1fwg_C
565
129
44
2.59
4.55
22.528
1.634
T P
3feq_C
406
129
44
2.62
0.00
22.427
1.616
T P
2vun_A
385
129
43
2.65
2.33
21.573
1.561
T P
2q09_A
402
129
43
2.68
4.65
21.298
1.546
T P
2g3f_A
414
129
44
2.70
6.82
21.176
1.569
T P
1rjq_A
474
129
42
2.92
9.52
21.069
1.389
T P
1nfg_A
456
129
41
2.85
2.44
20.944
1.389
T P
1k1d_A
459
129
38
2.40
10.53
20.807
1.521
T P
1fwh_C
565
129
44
2.75
2.27
20.771
1.545
T P
1ejs_C
565
129
41
2.66
4.88
20.742
1.487
T P
2kau_C
565
129
40
2.48
5.00
20.594
1.551
T P
2jmz_A
186
129
41
2.70
4.88
20.228
1.463
T P
1fwi_C
550
129
37
2.73
10.81
20.047
1.306
T P
1k75_A
431
129
36
2.90
8.33
19.951
1.199
T P
1gkr_A
450
129
38
2.78
5.26
19.316
1.320
T P
2puz_A
404
129
37
2.78
8.11
18.851
1.283
T P
1a5l_C
536
129
37
2.94
2.70
18.775
1.216
T P
1gkp_A
457
129
34
2.62
8.82
18.545
1.252
T P
1ejt_C
565
129
39
2.75
7.69
18.475
1.368
T P
1kae_A
434
129
35
2.71
11.43
18.384
1.246
T P
1m7j_A
474
129
36
2.68
0.00
18.246
1.296
T P
1eju_C
552
129
36
2.92
16.67
18.181
1.193
T P
1ejv_C
552
129
34
2.75
8.82
18.053
1.192
T P
1am2_A
181
129
37
2.72
10.81
17.997
1.313
T P
1fwf_C
550
129
34
2.88
11.76
17.989
1.139
T P
1ejr_C
552
129
37
2.73
5.41
17.952
1.308
T P
1rk6_A
474
129
34
2.90
0.00
17.812
1.133
T P
1us1_A
704
129
32
2.71
6.25
17.693
1.139
T P
1ef2_A
565
129
30
2.73
3.33
16.167
1.060
T P
1fwa_C
565
129
32
2.68
6.25
16.143
1.153
T P
1krc_C
566
129
31
2.75
6.45
15.903
1.088
T P
1krb_C
565
129
29
2.83
3.45
15.742
0.989
T P
1a5k_C
566
129
29
2.85
10.34
15.657
0.985
T P
3e74_B
432
129
30
2.85
3.33
15.291
1.016
T P
1a5m_C
566
129
28
2.73
3.57
15.164
0.989
T P
1at0_A
145
129
21
2.92
4.76
11.945
0.695
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]