LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_202.5wLII_11184_18
Total number of 3D structures: 68
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
2co7_B
197
122
94
1.10
17.02
75.546
7.858
T P
1l4i_A
189
122
94
1.70
15.96
72.656
5.215
T P
3dpa_A
218
122
91
1.68
13.19
70.416
5.123
T P
1qpx_A
206
122
88
1.65
13.64
68.317
5.036
T P
1qpp_B
212
122
89
1.62
14.61
68.092
5.188
T P
1klf_A
205
122
92
1.69
13.04
67.583
5.152
T P
2w07_A
215
122
89
1.79
13.48
66.007
4.721
T P
3bwu_C
200
122
92
1.65
13.04
65.582
5.267
T P
1qun_A
200
122
91
1.69
12.09
65.288
5.079
T P
2j2z_A
216
122
90
1.74
13.33
65.130
4.892
T P
1n0l_A
215
122
89
1.83
13.48
63.801
4.600
T P
2gbc_A
730
122
43
2.17
4.65
27.761
1.897
T P
2z3z_A
651
122
42
2.38
2.38
25.358
1.690
T P
1orv_A
728
122
46
2.42
13.04
25.162
1.824
T P
1vz3_A
710
122
45
2.51
6.67
25.128
1.727
T P
1z68_A
719
122
48
2.57
4.17
24.931
1.800
T P
2jid_A
728
122
41
2.42
4.88
24.920
1.626
T P
2d5l_A
665
122
40
2.47
2.50
24.840
1.559
T P
1o6f_A
710
122
45
2.55
8.89
24.685
1.698
T P
1vz2_A
710
122
43
2.55
9.30
24.275
1.622
T P
1h2x_A
710
122
45
2.58
8.89
24.269
1.677
T P
1yr2_A
680
122
43
2.52
13.95
24.257
1.642
T P
2dcm_A
662
122
38
2.60
2.63
24.186
1.407
T P
1o6g_A
710
122
42
2.39
9.52
24.157
1.685
T P
2bgr_A
729
122
43
2.48
11.63
23.987
1.667
T P
3f0d_D
157
122
41
2.53
2.44
23.907
1.560
T P
2qzp_B
561
122
45
2.74
2.22
23.820
1.585
T P
1e5t_A
710
122
41
2.36
12.20
23.727
1.665
T P
2g63_A
726
122
42
2.52
11.90
23.630
1.603
T P
1wcy_A
729
122
41
2.37
14.63
23.624
1.658
T P
3d4l_A
728
122
40
2.34
15.00
23.478
1.637
T P
2pmp_A
160
122
42
2.36
9.52
23.446
1.707
T P
2onc_B
728
122
41
2.43
12.20
23.384
1.624
T P
2qr5_A
576
122
44
2.71
6.82
23.370
1.568
T P
2uzh_C
155
122
39
2.35
2.56
23.130
1.593
T P
1knj_A
156
122
41
2.25
7.32
23.114
1.748
T P
3ddu_A
707
122
40
2.49
7.50
22.825
1.547
T P
1qfm_A
710
122
39
2.40
10.26
22.670
1.561
T P
1w55_A
369
122
38
2.42
7.89
22.269
1.509
T P
3b6n_A
150
122
37
2.21
0.00
21.451
1.602
T P
1r9m_B
733
122
40
2.77
7.50
21.340
1.394
T P
1jn1_A
157
122
40
2.58
5.00
21.152
1.494
T P
1vh8_A
153
122
39
2.47
2.56
20.894
1.519
T P
1xfd_A
723
122
33
2.23
6.06
20.834
1.416
T P
1h47_B
158
122
34
2.64
2.94
20.527
1.243
T P
2rip_A
729
122
31
2.03
0.00
20.119
1.453
T P
1yqn_A
158
122
35
2.47
2.86
20.020
1.363
T P
2qjr_A
728
122
36
2.74
5.56
19.788
1.266
T P
2amt_A
156
122
34
2.87
2.94
19.623
1.146
T P
3fpi_A
161
122
34
2.45
5.88
19.293
1.335
T P
2gzl_A
159
122
35
2.68
8.57
19.105
1.259
T P
2qt9_A
728
122
31
2.23
0.00
19.068
1.328
T P
1pfq_A
728
122
30
2.11
0.00
19.010
1.359
T P
1r9n_B
731
122
34
2.78
5.88
18.699
1.179
T P
1gx1_A
157
122
32
2.71
3.12
18.643
1.139
T P
1iv3_A
150
122
35
2.58
5.71
18.585
1.305
T P
1t0a_A
158
122
32
2.60
6.25
18.544
1.185
T P
2rgu_A
728
122
35
2.68
5.71
18.349
1.259
T P
1iv1_A
150
122
32
2.59
3.12
18.314
1.189
T P
1h2w_A
710
122
32
2.70
0.00
18.213
1.141
T P
1e8m_A
710
122
35
2.84
2.86
17.982
1.190
T P
1to7_B
728
122
29
2.78
3.45
17.038
1.008
T P
1va4_A
271
122
33
2.81
3.03
16.949
1.135
T P
2hu5_B
575
122
28
2.32
10.71
16.768
1.159
T P
3ccb_B
729
122
31
2.89
6.45
16.739
1.037
T P
2hu8_A
575
122
28
2.36
10.71
16.731
1.138
T P
1tk3_B
728
122
28
2.63
10.71
16.557
1.025
T P
2ecf_A
700
122
30
2.51
10.00
16.177
1.150
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]