LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_214.5wLII_11184_47
Total number of 3D structures: 36
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1j71_A
334
83
72
1.97
13.89
76.457
3.484
T P
1psa_A
326
83
69
1.92
13.04
75.872
3.412
T P
1eag_A
339
83
71
1.97
14.08
75.718
3.438
T P
1tzs_A
322
83
70
1.96
15.71
75.468
3.404
T P
2qzw_A
341
83
69
1.87
14.49
75.255
3.508
T P
3cms_A
320
83
70
2.01
14.29
75.233
3.324
T P
1b5f_A
239
83
69
1.99
13.04
74.988
3.297
T P
2h6t_A
340
83
68
1.79
10.29
74.880
3.597
T P
5pep_A
326
83
70
2.01
12.86
74.878
3.313
T P
1f34_A
326
83
68
1.97
13.24
74.514
3.280
T P
1flh_A
326
83
69
1.92
13.04
74.446
3.424
T P
1qrp_E
326
83
70
2.06
12.86
74.377
3.248
T P
4cms_A
320
83
66
1.70
12.12
74.377
3.660
T P
4pep_A
326
83
66
1.80
13.64
73.927
3.470
T P
1htr_B
329
83
70
2.06
17.14
73.504
3.241
T P
1am5_A
324
83
70
2.12
11.43
73.390
3.152
T P
1zap_A
341
83
68
1.95
14.71
72.901
3.318
T P
1lya_B
241
83
69
2.09
8.70
72.786
3.152
T P
1fq5_A
329
83
65
2.00
13.85
71.345
3.093
T P
1smr_A
331
83
67
1.94
11.94
71.323
3.288
T P
1qdm_A
430
83
66
1.94
16.67
71.036
3.240
T P
2qzx_A
342
83
70
2.13
11.43
70.917
3.144
T P
1g0v_A
329
83
65
1.88
13.85
70.897
3.280
T P
2asi_A
356
83
65
1.87
16.92
70.839
3.307
T P
1dpj_A
329
83
65
1.89
13.85
70.727
3.268
T P
2g24_A
329
83
65
1.92
9.23
70.419
3.220
T P
2iko_A
338
83
67
2.15
10.45
70.187
2.975
T P
1hrn_A
334
83
67
2.08
10.45
69.972
3.072
T P
2i4q_A
336
83
65
1.99
9.23
69.806
3.116
T P
3d91_B
337
83
62
1.80
11.29
69.156
3.258
T P
1lf2_A
329
83
66
2.05
9.09
68.239
3.065
T P
2bju_A
329
83
65
2.00
7.69
67.854
3.088
T P
3psg_A
365
83
59
1.52
11.86
67.253
3.633
T P
3f9q_A
325
83
64
2.00
6.25
65.785
3.043
T P
2anl_A
327
83
64
2.05
6.25
65.669
2.976
T P
1pfz_A
370
83
63
2.06
6.35
64.437
2.923
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]