LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_217.5wLII_11184_63
Total number of 3D structures: 70
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
2vsf_A
588
514
386
1.74
17.88
68.949
20.932
T P
3crv_A
551
514
248
2.62
12.50
29.102
9.129
T P
2vl7_A
459
514
219
2.35
15.53
28.117
8.951
T P
3bxz_B
440
514
161
2.41
13.66
20.299
6.410
T P
1d9x_A
590
514
138
2.26
19.57
18.419
5.848
T P
1t5l_A
595
514
132
2.34
19.70
17.797
5.413
T P
1d9z_A
590
514
135
2.25
17.78
17.779
5.749
T P
1d2m_A
552
514
132
2.35
23.48
17.606
5.378
T P
2fdc_B
585
514
134
2.48
18.66
17.545
5.202
T P
1c4o_A
504
514
129
2.29
23.26
17.196
5.395
T P
2d7d_A
621
514
131
2.38
16.03
17.149
5.281
T P
1wp9_A
479
514
126
2.39
14.29
16.996
5.054
T P
2j0s_A
391
514
128
2.29
15.62
16.919
5.348
T P
1z63_A
468
514
122
2.25
16.39
16.686
5.189
T P
2db3_A
420
514
132
2.62
17.42
16.635
4.856
T P
3dmq_A
961
514
131
2.41
14.50
16.466
5.223
T P
3g0h_A
408
514
128
2.47
20.31
16.454
4.972
T P
1z6a_A
480
514
121
2.34
14.88
16.364
4.963
T P
1hv8_A
363
514
128
2.54
21.09
16.293
4.846
T P
2vso_A
366
514
125
2.49
18.40
16.279
4.822
T P
1xtk_A
382
514
126
2.43
18.25
16.262
4.978
T P
2hyi_C
392
514
129
2.36
15.50
16.221
5.237
T P
3fht_A
392
514
124
2.40
21.77
16.160
4.970
T P
2v1x_A
527
514
128
2.40
14.06
16.155
5.111
T P
1xtj_A
374
514
133
2.58
20.30
16.132
4.967
T P
2z0m_A
331
514
128
2.46
21.88
16.022
4.999
T P
1s2m_A
377
514
122
2.53
18.85
16.014
4.637
T P
3eiq_D
371
514
129
2.54
19.38
15.772
4.879
T P
2gk6_A
602
514
121
2.34
19.01
15.527
4.951
T P
3ews_A
416
514
120
2.48
17.50
15.484
4.645
T P
2hjv_A
158
514
112
2.26
9.82
15.318
4.740
T P
1xti_A
381
514
122
2.53
18.03
15.230
4.644
T P
1fuu_B
380
514
124
2.60
14.52
15.133
4.588
T P
1oyw_A
516
514
116
2.28
12.07
15.131
4.870
T P
1gku_B
1011
514
117
2.35
6.84
14.964
4.767
T P
2zu6_C
351
514
107
2.34
6.54
14.159
4.392
T P
2oxc_A
205
514
98
2.29
15.31
13.921
4.099
T P
3b6e_A
182
514
94
2.18
20.21
13.915
4.124
T P
1qva_A
213
514
99
2.32
21.21
13.887
4.098
T P
2hxy_A
376
514
99
2.35
15.15
13.712
4.044
T P
2p6n_A
160
514
95
2.23
9.47
13.588
4.077
T P
2pl3_A
232
514
94
2.21
18.09
13.409
4.078
T P
2p6r_A
683
514
105
2.55
13.33
13.269
3.966
T P
1vec_A
206
514
95
2.48
17.89
13.225
3.677
T P
2j0u_B
347
514
95
2.27
15.79
13.045
4.008
T P
2j0u_A
366
514
97
2.33
16.49
12.976
3.986
T P
3eaq_B
209
514
94
2.35
14.89
12.967
3.835
T P
3ber_A
220
514
96
2.37
19.79
12.901
3.894
T P
1t6n_A
207
514
98
2.39
18.37
12.816
3.939
T P
3dkp_A
240
514
89
2.07
20.22
12.705
4.104
T P
1z3i_X
644
514
97
2.53
12.37
12.606
3.690
T P
3fhc_B
224
514
89
2.31
24.72
12.597
3.697
T P
1q0u_B
210
514
92
2.27
20.65
12.558
3.888
T P
1qde_A
201
514
87
2.26
20.69
12.545
3.692
T P
2va8_B
695
514
98
2.50
12.24
12.528
3.773
T P
3fe2_A
234
514
93
2.32
19.35
12.503
3.841
T P
2zj8_A
700
514
93
2.62
11.83
12.121
3.421
T P
3bor_A
194
514
86
2.29
23.26
12.115
3.601
T P
2g9n_A
216
514
89
2.33
13.48
12.069
3.666
T P
2gxq_A
206
514
78
2.28
24.36
11.557
3.281
T P
1gl9_B
1020
514
91
2.69
12.09
11.521
3.267
T P
1oyy_A
512
514
85
2.59
8.24
11.470
3.165
T P
2jgn_B
161
514
84
2.29
10.71
11.204
3.508
T P
1wrb_A
232
514
79
2.38
18.99
10.954
3.186
T P
2i4i_A
408
514
85
2.48
7.06
10.731
3.290
T P
1gm5_A
729
514
77
2.84
5.19
9.712
2.615
T P
2ffh_A
407
514
72
2.57
9.72
9.563
2.695
T P
1qvr_A
803
514
75
2.83
6.67
9.538
2.558
T P
2v7k_A
345
514
52
2.70
7.69
7.096
1.858
T P
2a6h_A
229
514
50
2.78
6.00
6.498
1.738
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]