LGA
Sequence Independent Analysis (LGA)
Frame of reference: Cat.Q2246_545_218.5wLII_11184_65
Total number of 3D structures: 43
LGA calculations using distance cutoff DIST: 4.0 A
Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY
Structure Deviation Summary
Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)
Structures ordered by LGA_S - score
Structure |
NS |
NT |
N(dist=4.0) |
RMSD(N) |
Seq_ID(N) |
LGA_S |
LGA_Q |
PLOTS |
1w3b_A |
388 |
390 |
373 |
0.72 |
15.82 |
94.813 |
45.287 |
T P |
2vq2_A |
220 |
390 |
197 |
1.96 |
13.71 |
43.378 |
9.562 |
T P |
2fi7_A |
223 |
390 |
185 |
1.90 |
10.27 |
42.154 |
9.268 |
T P |
2ho1_A |
222 |
390 |
188 |
1.98 |
14.89 |
41.622 |
9.033 |
T P |
2pl2_A |
194 |
390 |
171 |
1.98 |
16.37 |
37.692 |
8.208 |
T P |
2gw1_A |
487 |
390 |
180 |
2.07 |
11.11 |
37.135 |
8.303 |
T P |
3cv0_A |
300 |
390 |
147 |
1.70 |
12.24 |
35.091 |
8.174 |
T P |
2j9q_A |
300 |
390 |
149 |
1.76 |
16.11 |
34.900 |
8.018 |
T P |
1hh8_A |
192 |
390 |
147 |
1.49 |
10.88 |
34.894 |
9.256 |
T P |
1e96_B |
185 |
390 |
148 |
1.64 |
10.81 |
34.800 |
8.516 |
T P |
1wm5_A |
205 |
390 |
145 |
1.53 |
10.34 |
34.714 |
8.916 |
T P |
2c0l_A |
292 |
390 |
149 |
1.75 |
15.44 |
34.316 |
8.042 |
T P |
1xnf_B |
262 |
390 |
165 |
2.07 |
17.58 |
33.657 |
7.604 |
T P |
3edt_B |
258 |
390 |
162 |
2.19 |
16.67 |
33.349 |
7.083 |
T P |
2vsy_A |
547 |
390 |
161 |
2.08 |
14.29 |
33.347 |
7.369 |
T P |
2fo7_A |
136 |
390 |
135 |
1.06 |
17.04 |
33.336 |
11.685 |
T P |
3ceq_B |
269 |
390 |
158 |
2.18 |
11.39 |
32.493 |
6.922 |
T P |
3cvq_A |
289 |
390 |
147 |
1.98 |
14.29 |
32.388 |
7.053 |
T P |
2q7f_A |
194 |
390 |
164 |
2.26 |
14.02 |
32.358 |
6.935 |
T P |
1hz4_A |
366 |
390 |
201 |
2.48 |
10.95 |
31.949 |
7.776 |
T P |
1p5q_A |
283 |
390 |
122 |
1.29 |
13.93 |
30.581 |
8.789 |
T P |
2c2l_A |
281 |
390 |
124 |
1.56 |
15.32 |
30.499 |
7.453 |
T P |
1qz2_A |
285 |
390 |
122 |
1.23 |
13.93 |
30.423 |
9.196 |
T P |
1ihg_A |
364 |
390 |
124 |
1.59 |
8.87 |
29.502 |
7.317 |
T P |
1wao_1 |
471 |
390 |
131 |
1.97 |
12.21 |
29.423 |
6.325 |
T P |
1kt1_A |
374 |
390 |
120 |
1.25 |
14.17 |
29.395 |
8.907 |
T P |
2vsn_A |
534 |
390 |
138 |
2.06 |
14.49 |
29.142 |
6.386 |
T P |
2c0m_C |
302 |
390 |
151 |
2.32 |
13.25 |
29.075 |
6.250 |
T P |
2vyi_A |
128 |
390 |
118 |
1.18 |
15.25 |
29.007 |
9.202 |
T P |
2dba_A |
148 |
390 |
121 |
1.47 |
14.05 |
28.883 |
7.692 |
T P |
1a17_A |
159 |
390 |
122 |
1.68 |
13.11 |
28.844 |
6.864 |
T P |
1na0_A |
119 |
390 |
117 |
1.25 |
17.09 |
28.643 |
8.670 |
T P |
1kt0_A |
357 |
390 |
116 |
1.27 |
12.07 |
28.487 |
8.480 |
T P |
2fbn_A |
153 |
390 |
117 |
1.44 |
15.38 |
28.436 |
7.604 |
T P |
2bug_A |
131 |
390 |
121 |
1.71 |
11.57 |
28.167 |
6.686 |
T P |
1elw_A |
117 |
390 |
116 |
1.28 |
13.79 |
28.105 |
8.412 |
T P |
1elr_A |
128 |
390 |
114 |
1.64 |
8.77 |
27.005 |
6.564 |
T P |
1fch_A |
302 |
390 |
127 |
2.10 |
11.02 |
25.898 |
5.784 |
T P |
2if4_A |
258 |
390 |
114 |
2.00 |
7.89 |
23.612 |
5.424 |
T P |
1ouv_A |
265 |
390 |
128 |
2.68 |
12.50 |
21.604 |
4.611 |
T P |
1na3_A |
86 |
390 |
84 |
1.26 |
15.48 |
20.577 |
6.179 |
T P |
2avp_A |
68 |
390 |
68 |
0.79 |
14.71 |
17.295 |
7.652 |
T P |
1xi4_A |
1630 |
390 |
89 |
2.69 |
12.36 |
14.755 |
3.189 |
T P |
NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)
Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures",
Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374.
[MEDLINE]